RNA id: XM_043248778.1


Basic Information

Item Value
RNA id XM_043248778.1
length 2270
RNA type mRNA
GC content 0.42
exon number 5
gene id dipk2b
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16579731 ~ 16584061 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATCTACTAAAGCTAACACTCAAGAAGTGCCACTCCATTGTTTAATGTGCTCATGTAAAGTGTGGAGGGGTTTTGGGGGCTGCCACTATGGTGCTGTGATTCTGGAGTTTTTTACAGGGATGGCAGGGATATGGTCAGAGGCCTGGACACTGTACCTCATATTAGCATTTGGTTCTACGGACCCCTCACCAGCACCCCAAGAGGCGCTTGACTTCAGAAGAGTTTTCTTGGGTTTGGATAAATGCAACGCCTGCACTGGAACATCCATTTGCAAGAAGTTTTTCAAGGATGAAATAAGGTTTGAAAGATGGCTGACTGCTCAGTCTAATCTCTCCTCAGCAGATGTGCGCTCATATGAGGGAAACTATACAGACAGCACAGCGGGCTGGAGACCTGTGGTGCTGTCCTACGTGATGTCTCCTCACCTGCACCAGATATCAGACAATAGCATTTGCGCCTCAGCAGGCAAAGGGAAATCCTGCAGCATTGAAGCTGTCCTCAGGGCCACTTCACGCTTCCAAAGTTGGGTCCGTTCCAACCTACTGCTTCCCAGCATGGTGAAGGGTCTGGTCACCCCGATGCTGCGCTGTCCATCTCAGAGGCTGCTTGACCGCATTGTGCGACGTTACTTTGAAGTGACCGATGTGGGAAGTGTGCAGATGAAGCACTTCAGTGAAAAGGACAAACTCAGACTTCTTTACACCCTGGCTGTAAATCAACAACCTCTCATACTGCAGATGTTTCCAGGCACGGAGGGCTGGCCCTTCCTCCGCTACCACGGCTCCTGTGGAAGGATGATGGTCTGGGCAGGGAGCAAACCCCTCAGGAGCCTGTTTTCCTCTCCACTGGAGCGCCGCGCAGACATTGCCTACCAGCTTCTTCACATCACCCAGAGCCTGAGCTCTAACAGCCTCCAGTTCAGCCTCTTCTACACCAAAGTCTCAAAGGATATGTTTGGTGCCTTGGATGATGGCAGGGTCTTCATTGTGGATGCCAGTACCATAGGGATTATTGatctgcaggaagGATATCCTCCTGATGAAGACTTGATACCAGAACATCTCGATGTCTTCTCCTGTCTCAGTGGATCTTGCGAGAGATCTCCTCCATGTGAGACAGTTCGAGCCACACAGAGTTTTAACTTACTTTGCAAACATGTCATTAACAATCTGCTTGTGCCTAATGATGTGCAGTCAGGTCACCTTCCCAAAGAAGCCGTCAGTGCACTTGTTATCTGTGCAGACCAATCGCAGTCTGACCAAAGAATAATCGCTGCCATCCAAACCTTGAAAGGCATTTTACAGACATTAAGGCCATGCAGCACTCTATATGGATACAGGTATCCTGAATGCCTATATAGTGACAAGTTCTAGACCAACACTACACACCttaagggataattcacccatgattcttcaaaatatcttttgtgttccacagaaggtggtcgtacaggtttggaattatAAGCAAGCAAATGACAACAGTAATTTTTAGGTGGATATCACTTTAAAGCGCATTGCATGGCAATATGGAATATAGCAGTTAATTTTTCTGATGGAAAATAATATGGAATTGACTGTGTAACCTTATCAAAGCACAGCTGAAAAACAAACCTTGAGACATGTAAAATTAGATACCTATTCgaactgcaaaaatattataactCACAGACGAGACAAGGAATTTCATCACAAAagaagaatattttaattacaaagacAACTCTGATTAGTAACCCATAAACCATATCAATCTTCATGTTTCTGTACAATGCTCGCTAAGCAGTTTTATTCGtgtatagaaaatgtaaaaagagaaatgttcaaaatgacATTACTCCATAAAATTTAATGGCAGgaactctgaaaaaaaataacagcattccatcaacaaatattttcaagcaataaatatttataaatagtgTAAATTTACAACAAGAttagaaataacacaaaaaaaattaaagtttattcCTTTGTCTATGTGCAACCCATTTTTCTTTGTGACTTGGCTATCCCCCCAACTTAACTTTTTCCttaagaaaagacaaaaatatttttaaaaagaaaaaaaaaaaaaattcacattacaatttctttttttttgttacctaAAGAAAATGTTGAACAAAAAAAGCCCAGCTACGGTAGTActtaaagacaaagaaaatcATGTATTAGCTCGTACATGAAGTACAGAAGACAAAAGAAACGACAAAAAAGAGGATTAAAgcaacagtaaaataaaaaaggaagagTCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104861 lncRNA downstream 459412 16118282 ~ 16120319 (-) True G70894
XR_006251840.1 lncRNA downstream 625755 15948113 ~ 15953976 (-) True LOC122352066
TU104518 lncRNA downstream 817062 15762383 ~ 15762669 (-) True G70660
TU104479 lncRNA downstream 935455 15642259 ~ 15644276 (-) True G70633
XR_006251775.1 lncRNA downstream 941295 15628883 ~ 15638436 (-) True LOC122351574
XR_006251709.1 lncRNA upstream 21306 16605367 ~ 16631420 (-) False LOC122351188
XR_006251710.1 lncRNA upstream 21306 16605367 ~ 16617024 (-) True LOC122351188
TU104934 lncRNA upstream 26209 16610270 ~ 16610561 (-) True G70955
TU104935 lncRNA upstream 29056 16613117 ~ 16613424 (-) True G70956
TU104958 lncRNA upstream 46425 16630486 ~ 16715102 (-) True G70967
XM_043248169.1 mRNA downstream 39080 16538368 ~ 16540651 (-) True fundc1
XM_043248411.1 mRNA downstream 41656 16526525 ~ 16538075 (-) True efhc2
XM_043248026.1 mRNA downstream 64287 16509560 ~ 16515444 (-) True LOC122351145
XM_043249229.1 mRNA downstream 74804 16477543 ~ 16504927 (-) True mao
XM_043249228.1 mRNA downstream 74831 16477543 ~ 16504900 (-) False mao
XM_043248032.1 mRNA upstream 110693 16694754 ~ 16698639 (-) False slc35a5
XM_043248031.1 mRNA upstream 110693 16694754 ~ 16698537 (-) True slc35a5
XM_043249387.1 mRNA upstream 136743 16720804 ~ 16744816 (-) False dcaf6
XM_043249386.1 mRNA upstream 136743 16720804 ~ 16744816 (-) False dcaf6
XM_043249385.1 mRNA upstream 136743 16720804 ~ 16744816 (-) False dcaf6
TU104521 other downstream 807867 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 1180294 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 1273756 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 2325955 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 2639863 13938259 ~ 13939868 (-) True G70294
TU104983 other upstream 233079 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 233079 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 651811 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 1985694 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 3136437 19720498 ~ 19721737 (-) False ankar

Expression Profile