RNA id: XM_043248784.1


Basic Information

Item Value
RNA id XM_043248784.1
length 5069
RNA type mRNA
GC content 0.50
exon number 17
gene id nrp2b
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7756774 ~ 7821894 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGGACTAGTGGCTGGTCTTTAATCAGAGACTGGAGAGGCGGGCCGAGGTGCTGACTGTAATGCGATAGCTGCGCCCGTCCTTAATGCTATTACATCCACATGCTGCTGCCGCCGCGCAAGACTCAGCGCTCAAACGCAGAGACGCGCAGTGCCAAAGAGACAGCGCACGGAGTATCTCTATCACAAGACCTCAGTTACCGACCATCTGCACTGAAGACCTTATCCGAGCTGCCCTTTTCTGACAGTTTTCCGCCGTGGACAGTGCTTCCCACTCGAGACAGAGCGTTTGGTGCTGGATTCTGTGGGGACAAGACCGGGAAAACGCTTCATGTCAGTTGGATTTGAAGGCGAGAGAAAGCGCCGCTCACCTCACTCACGCACATGCGGCTGAAGCTCGAGGAATTCAagccaaaatatgttttaggtCTGAACTCtggtttttaaaagaaagtttaGTTTTAATCGgacgtttttttcccccccgttGTCGTTGCGTTTGTTTAGGATATAACTGGAGATGTTAAACAGCCAAGTCTGGGTTGAATTTACGCATACAGCGTTTTGAAGCGTATCGAGAAAGCAGGCGAAAGAAATTGTTATCGGGCTCAAGACACAAGTGGATACATCATCAGTGGACAAGAACATTTTCAAAGAACATCACAAGAAGTTCGGCGTTTCCTCTACACGCGCTGGGTGAACATCACCCAGAAAAGATGGATTTATTCACAAAGCTCTGTGGATCTTTACTTGTCTTGTGTGCGGCATTAGTTCGTGGAGAGGAggAGTTGTGTGGTGGGAATTTGGATGCCAGTGACGCAGGATACATCACGACACCCGGTTACCCGCTGGAGTACCCTCCCCACCAGAACTGTCGATGGGTGATCACGGCACCCGAACCGTCCCAGCGTATCGTCCTAAACTTCAACCCGCACTTTGAGTTGGAGAAACTGGACTGCAGGTATGACTTCATTGAGATCCGGGATGGGAACACGGAGAGCGCTGATCTGTTGGGCAGACACTGCAGTAACATCGCACCTCCCGCGATCATCTCCTCGGGCCCCGTTCTGCACATCAAATTCGTCTCTGACTACGCCCACCAGGGGGCAGGGTTTTCGCTGCGCTATGAAATCTATAAGACAGGCTCCGACTGTTCCAGAAACTTCACCGCCCCGTCAGGTGTGATCGAGTCGCCCGGCTTCCCCGACAAATACCCCCACAATCTGGAGTGCACCTTCATCATCGTCGTCCCTCCTCACATGGACGTCACCCTCACCTTCCTCACTTTTGACCTGGAGAACGACCCCTTGCAGGGCTCGGAGGGCGAGTGCAAGTACGACTGGCTGGAGGTGTGGGACGGCCTCCCGCAGGtGGGACCTCTGATTGGGCGACACTGTGGTACTAAAATCCCTTCTGAAATACAGTCATCCACTGGTATCCTTTCTCTGTCCTTTCACACGGATATGGCCGTGGCCAAAGATGGCTTCTCTGCTCGCTACAACATGACTCTCAAGGAGGTCAATGACAATTTCCACTGCAGTAATGCTCTTGGCATGGAGTCAAACAAGATCAGTGATGACCAGATCTCTGCGTCATCCTCATTCTATGATGGCCGATGGTCCCCAAGACAGGCTCGACTTAACTTTGAAGATAACGCTTGGACGCCCAATGAGGACAGCAACAAAGAATACATCCAGGTGGACCTGCACTTCCTGAAAGTCCTGACGGGCATCGCCACTCAGGGTGCAGTGTCTAAAGAGACACACAAGTCCTACTTTGTCACCACCTTCAAGCTGGAGGTCAGCACTAACGGAGAAGACTGGATGATCTACCGCTATGGCAAAAACCACAAGGTTTTCCATGCGAACGTAGACCCCTCAGAGGTGGTCCTGAACCGGATCCCCCAGCCTGTCTTAGCTCGGTTTGTCCGCATCCGACCTCAGACATGGAAGAATGGAATCGCATTGCGCTTCGAACTTTATGGCTGTCAGATCACGGACGCTCCATGCTCCGAGATGCAGGGAATGCTCTCCGGCCTCCTGCCAGACTCCCAAATCTCAGCCTCCTCCATGAGGGACATCCACGGGGCCACAGGTGCAGCCCGGCTGGTGGCCAGCCGCTCAGGATGGTTCCCCAGTCCCACGCAGCCCGTGGCTGGTGAAGAATGGCTGCAGGTGGACTTAGGAGTCCCCAAAACTGTTCGGGGCATCATCACACAAGGGGCACGTGGAGTGGATGGCAGTACCAGTGCAGAGAACCGGGCCTTCGTGCGGAAGTATAAACTTTCCCAtagtttgaatggaaaagattgGAGCTACATCATTGACTCCAAGACCAATCTCCCAAAGATTTTTGAGGGTAACACGCACTACGACACCCCAGAGATCCGTCGCTTTGACGAGATTGTGGCCCAGTTTATCCGAGTGTATCCAGAGAGGTGGTCTCCCGCCGGCATCGGAATGAGATTGGAGATACTGGGTTGTGACTTGCCAGAATCTACCACCATTCCTGACACTGCAACTCCTACCCTCCCTCCTCACGATGAGACAAGTACTGCCCACAGGACACCAGCTCCCACCACTCTCTCATCTCTGGGTGGTCTGTGTGACTTTGAGCAGAGTATGTGTGGATGGACCCATGACCCCGCGTCCGAGCTGAAGTGGTCTCTGTACAGTTCCTCTAGTCCTAGTCTGGACCTGACAATGGGATCTGACAATTCTGGAAATTTCCTGTATGTGGAGGCGAGTCCTAAGTCTGAGCCGCAGCGTGCGAGGTTAATGAGCCCGTCGGTGGGACCCGAGCGCCGTCCCGTCTGTCTGCTCTTCTACTACCAGCTGCAGGGTGAAGGTCAGGACAGCCTTCGTGTGTTGCTCCGGGATGATGACCAGGAGGAGACCCTGCTCTGGGCGCTGAAAGGAGACCAGGGGCCCATGTGGAGAGAAGGCCGCACCATCCTTCCTCAGTCCCCTAAAGAATATCAGGTTGTCATCGAGGGCTTCTTTGAGCGTGGCAGTCGAGGGCACATCTGGGTCGACAACATCCATATGAGCTCCAGCATCGAGCTTGAGCAGTGTACACAACCCTTCGCTGCATTCCCCCCTGAAATGACTGAGCGAAGACCCGAAGACCTTGGAAATAAGCGTCTGTTCAGTGGCAGAGAGCACATTGGTCAAGGGTTCCCGTTCCCTGCTTGGACCACACCCAACCCCTCACGAGAACCTCCAGTGACTCGGATCTCAGAGAAGGACAACGCCTGGCTGTACACCCTTGATCCCATTCTGGTCACCATCATCGTCATGAGTTCCCTGGGCGTTCTGTTAGGAGCAGTGTGTGCCGGGCTCCTGCTGTACTGCACCTGCTCCTACAGCGGCCTGTCGTCCCGCAGCACCACCACGCTGGAGAACTACAACTTCGAGCTGTACGACGGTATCAAGCACAAGGTGAAGATCAACCAGCAGCGCTGCTGTTCTGAGGCCTGATGGCAGCCGATCAGGAGAGGCGTTCTGTCCGCTCGTGAACTGGTGCCGGCCAGATCCAAAACTGTGAATGGACCTCACGCCGTTAAAATAGGGCTGATCTCTGACCGGGATTGTTGAAGGATCACTGGGAGCATAGAAGCTTCCTGTGGACAGCTCAATGGGAGCAAATCGTGATCAACACATATCAACCTAATGACTTTCCAcaattcaaaaaagaaaaagaactttaaagaaatgtatattgctatagatttgtaaagaaaaatacaatctAATAATGCTTAATGGAAGTTAGAAGAGAGGGAGAGGCACTAGGACTAGAAGACAGATTGCTTGTGAAATCTCGGCCTCCATTGTGTGAACGCTGTGGCCTACAATATTGTGGACATTTGCTTTAGTTTAGACTCGCGTAAGTTCTCATCCCATCCTGTCTTTTGCCACTTTTCACAACCGTTTTGAAGTGTCAACGCCTGTTATGAATGTTTTGTACTTCGGTTCAGTCTGTTTGTagcatattgtttttgttgtggcCATTAGAcaataagaaagaaaacacgCTGTATTAAGTTCAGAAAAATCCTTTTAGATTGAAGTATTAGGattgtcttttgtcttttttctcttttcctttgttttttattttttgctttgacTGTTTGATTTTTAAGCATAGAGTTGAAGACTCTGTGCTGACAATTCAAACTAATTTATCGCAACCTATGGATTGCTAAGGATTCAGAGCCACTGAGCTCAAGAgtgttgagagagagagagaatcttcAGTTCTCTTTACCCTATTCTTGAAGTAACAAAGACTCAAGCTGGCAGAGCGACTTTGGTGAAGGAGCTGGAAAATCCCCAAGCCACTTTCATGTACAAACAATCGAGCCTTAAGCAAACTGTTTTGGAGGAGAGCCATTTTGAAACACCAGTCCTTGGGTTTGAAGTCACTGGGGCCTCGGAGGAGTCGGGCCTTACACttgctttctttcatttcaccTGTCTGTTTACTCCATGGTTTATTTCGGGCTGCTGAAAATGAAGGCTAACAAAACAGGTTTGGTGCAAGCCTGAGAGAAGGGTGAGAGTTTCACAGAGTGTTTCACCTCGGGGTTGAAGAGAGCGTTAGAACGAGTACACACATGGGGGAAGTGTGTGTAAATTTCTTTATTGTACCTCAGACTGGCCTCTCGCTCCCCAGAGCCACGCTGGGAGATCTGTTGACTTGTGGATAAGCGATGGGGGTGGAGGGGCTCGTCTTATTAGGGAGTGCGGAAAGCAGCCGGAGACACGGATTGTTCAGTTGTTGGGGGAGAGCGATAAAGAGGGGGAGATTGTGTGTATTCAGCTCGGTTTTCATTGGACTCTGTTGACTCTTTTCCAAGTGCCTTGGAGCTCTGGCCTGTTTTGGCTTTGCTGCAGAGCTGTGATAGTATTACCTCGTCTGTCTGGGACAGGAGGCCAACACCAAAAGACAAGGAGATCCCGGCACTGGTCAGAACTTTCAAAAATTGTTGTTTGTAGACTTTGTACAGAAAAaagttcttttttattgttattattattatttaataaagtatgaTTAACGATA

Function

GO:

id name namespace
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0001755 neural crest cell migration biological_process
GO:0038084 vascular endothelial growth factor signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0007413 axonal fasciculation biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0017154 semaphorin receptor activity molecular_function
GO:0005021 vascular endothelial growth factor-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101200 lncRNA upstream 420417 7335491 ~ 7336359 (+) True G68435
TU101154 lncRNA upstream 455281 7298033 ~ 7301495 (+) False G68397
TU101158 lncRNA upstream 458491 7280767 ~ 7298285 (+) True G68397
TU101189 lncRNA upstream 493063 7262541 ~ 7263713 (+) True G68424
TU101162 lncRNA upstream 497382 7256680 ~ 7259394 (+) True G68401
TU101216 lncRNA downstream 31587 7853481 ~ 7854278 (+) True G68446
TU101545 lncRNA downstream 381959 8203853 ~ 8205963 (+) True G68668
TU101562 lncRNA downstream 400693 8222587 ~ 8222817 (+) True G68678
TU101678 lncRNA downstream 680862 8502756 ~ 8506143 (+) False igf2bp2a
XR_006251751.1 lncRNA downstream 778830 8600724 ~ 8614984 (+) True LOC122351403
XM_043249476.1 mRNA upstream 27985 7473998 ~ 7728791 (+) True pard3bb
XM_043249592.1 mRNA downstream 33327 7855221 ~ 7881034 (+) True abcb6b
XM_043249593.1 mRNA downstream 33327 7855221 ~ 7881034 (+) False abcb6b
XM_043249251.1 mRNA downstream 71721 7893615 ~ 7907304 (+) True ttll4
XM_043249252.1 mRNA downstream 71721 7893615 ~ 7907304 (+) False ttll4
XM_043248749.1 mRNA downstream 86193 7908087 ~ 7920562 (+) False prkag3b
TU100736 other upstream 1791896 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 1871023 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 2299247 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 2299513 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 2299933 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 519404 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 609251 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 1042755 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 1320698 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 1320698 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile