RNA id: XM_043248813.1


Basic Information

Item Value
RNA id XM_043248813.1
length 4919
RNA type mRNA
GC content 0.45
exon number 38
gene id uggt2
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10531653 ~ 10558579 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTCAGTCCGGTCATATTATAACCTGATAATCAAGAAGGCTGGACAGTTCTTGACAGATCTTCAGGTCAGCCTGTTGAAACTGTCTCTATCTCTCAGGGCCTATTCACCGGCTGTGCATGCTTTCCAACAAATAGCAAGTGATGAACCTCCTCCCGATGGCTGCGCTGCTTTTGTGGTTGTTCACGGTCAAAATGCATGCAGCACCAAGGATATGAAGAAGCTCTTGAAGACCGCAGCAGGCCAAGACCTTACCTGTACAAGTCTGACCATCAGTACCCCGGAGTCAACGGGACAGACCTGCCTGTAGCCGTTCTTTATGCTGAAATCGGCACAAAGGAGTTTAATACTTTTCATAAGGTTCTGTCAGAGCGGGCACAGGAGGGTAAAGTCATCTATGTGCTGCGACACTTTTTGTCTGAGTCAAAAAGTGAAAAGATGTTGCTGTCTGGATACGGTGTTGAACTGGCAATTAAAAGCACAGAGTACAAAGCCGTTGATGACACACAAGTTAAAGAATCCAAATCGGTTTCCACTGATAATGAGGATGAAAATGATGAAGTCCAAGGATTTCTGTTTGGCAAATTAAAAAAGTCTCACCCAGAGCTTCAGGATGAACTTGGAGAGCTTAGGAAGCATCTACTGGAGAGCACCAATGACATGACTCCTCTCAAAGTGTGGGAGCTCCAAGACCTCAGTTTCCAGGCAGCATCTCGTATCATGACTGTGCCAAAGTTTGATTCGCTCAAATTGATGCAAGACCTCAGCCAAAATTTCCCAAGCAGAGCCAGATCACTGACAAGAGTGGCCGTAAACCAAGACATGAGGAAAGAAATAGAAGACAATCAAAAGAGGTTGAGCGAGTCGATGGGGATCCAACCTGGAGATGCCAGTCTGTTTATTAATGGAATACACATTGACTTGGACATTCATAACCCTTTCAGCATCCTGGACATTCTCAGAACCGAGGCTACGATTCTCGAAGGTCTTCATAACCTTGGCATCAGAGGAAGCAGCGTTAGTAAGTTTCTGCATTTGCCTTCATCAACCACTGTAGAGGACAGCTACGCTCTGGACATCCGCCACTCATCCATTATGTGGGTTAATGATATTGAGAAGGACTCCATGTATCGTCACTGGCCCTCAAGTGTCCAGGAACTCCTCAGAGCTACATTTCCTGGAGTTATTCGACAAATACGCCGTAACTTCTATAACCTGGTTCTGTTTCTTGACCCAGTCCAAGAAGAGAGCATTGAGTTGGTGAAATTAGCAGAACTATTTTACAAACATAACATTCCACTCAGGATTGGGTTTGTGCTGGTTGTCAGTGCAGATGATAAAGTGGATGGGTATTTGGATGCAGGTGTTGCTCTCTTTCGGCTGTTAAACTACATCTCAGAGGAGTATGACGAAGCACAGGCTTTTACGTCCATGGTGTCAATATATAACAGGGTGGAAATTGGAGAGACTCTCTCTGTGGATACAGTAACTGCAtatctgaaaaagaaatttCCAAAAGCAAATGCTGCCAGAATTCTTGGAGTGGATTCAAGCTATGATGACAACAGAAAGGCTGGAGGCGGGTTTTACAGAAAGAGCGGCTTAGGTTCTTTACCAGTGGGTCTATTCAATGGTGTTCCACTCAGTAGTGAGGAGATGGACCCAGAAGAGCTAGAGACAGTTCTTCTGCAAAAAATCATGGAAACTACCAACTTCTTCCAAAGATCTGTCTTTATGGGTCAGATCACAGATAGTGTCGATGTGGTGGACTTTCTCATGGAGCAGGCCAATGTAGTTCCCCGTATCAACCCTCTCATTCTGAGCTCTGAGAGGCGATATCTGGATTTCACTTCCTCACCAGTTGCTGATGACTGGGATGACACAACTATGTTCTCATACCTGGACTCAAAAGACAAAACGGCAATTGTCTCTAAGAGAATGAAGTATTTCACCAGAGATGAAGAAGAGGTGTTATACGGAGTGACTCTGTGGATTGTAGCAGATATTGAACAGTCCTCTGGGAGGCAGTTGCTCCGGAATGCCTTGAAACATATGAAATCCGGCAGCTCTAACTGTCGCGTCGGAGTGATCAATAACCCAAGTGGAAAGCCCACAGAGGACACCAGTGCTCTGTACCGAGCCGTCTGGGCTTCTCTCCTCACACAAAGCAACAAGAACTCGCTCGACTTCACCCTAAAACTCCTCAAAGAAGAAAATGTGGAGCTCCTCAAACAAGGCACCAAGATTAAGCACTTACTTAAACAGGGTATGGACCATGATGCCTTTGAGAAGAAGTTCAACACGATGGAGGTGGACTTTCTGCACAGCCAGCAGAAGTACTGTAAGGAAGTTCTGAAGCTAAAAGCCGGACAGAGAGCTGTAGTCAGCAACGGCAGGACCCTGAGCCTACTGGATGAGGAAGAAGAGTTTAATGTGGAAGATTTCCATCTGCTAGAGAAGATCACACTTCGCACTTCAGCAGAAAAGATTAAATCTAAGATCAAGCAGATGAACTTGAATGCCCAAAAGGCCAGTGATCTAATCATGAAAGTAGACGCTCTTCTCACTGCATCACCTAAAGGAGAGGCCAGAAAAGACGTCAAATTTTTGAAGGACAAACACAGCGTTCTTCAGCTGGCACAGCGGGAAGATGAGGTGTCCTATGATGTTGTTGCCATCGTGGACCCTCTGACCAGAGATGCACAGAAGTTGGCTCCTTTATTAGTTGTGCTTGGTCAAGTGGTCAATATGAAAGTGCAGGTGTTCATGAACTGTCGAGCCAAGCTGTCTGAGATGCCCCTGAAGAGCTTTTATCGATATGTTTTGGAACCGGATGTTTCATTCTTCGGCAACAACTCCATTTCCCCTGGCCCTGTGGCCCGCTTTACTGAAATCCCAGAATCTCCTCTGCTCACTTTTAATATGATCACCCCAGAGAGCTGGATGGTAGAGGCGGTCAGGAGCCCATATGATCTAGATAACATCCACCTTCAGGAGGTCAGCGGTGTAGTCAATGCAGAGTATGAGCTTGAGTATCTGCTGTTGGAGGGCCACTGTTTTGACCTGTCCACAGGTCAGCCTCCCAGAGGGCTTCAGTTCACGCTGGGCATGAGACAGGAACCTCTCATACATGACACCATTGTCATGGCCAACCTGGGCTATTTCCAGTTAAAAGCCAACCCCGGTGCCTGGATCCTAAGGCTGCGTGAGGGCCGTTCAGAGGACATCTATCAGATACAAgcgCATGATGGCACAGACTCTCCTGTTGATGCTGGCGATGTCATTGTGGTGCTCAACAGCTTCCACAGCAAGATCATCAAAGTTAGAGTCCAGAAAAGGCCTGACAAACTCAATGAGGATCTTCTAAGCGAAGGAACAGAATCCAAAGGCTTGTGGGATTCCATAACCAGTGTGTGGAGTTCTTTGGAGAAAAGCTTTGCCGGTGGCCCGAGTGTGGACGAAGATGACAAGAAGAAAGACATTCTCAACATTTTCTCAGTAGCCTCTGGACATTTATATGAGCGCTTCCTGAGAATAATGATGCTGTCTGTTCTTCAACACACCAAAACCCCTGTCAAGTTCTGGTTCCTCAAAAACTACCTCTCCCCCTCATTCAAGGACACCATCTCTCACATGGCGAAGGCTTATGGTTTCCAGTATGAGCTGGTCCAGTATAAGTGGCCTCGCTGGCTTCACCAGCAGACAGAAAAGCAACGTATCATCTGGGGTTATAAGATCCTTTTCCTGGATGTGCTTTTCCCACTGGCTGTGGACAAGATCATCTTTGTAGATGCTGATCAGATTGTCAGGGCAGATTTGAAGGAGCTGAGAGATCTGGATCTAGAGGGCGCCCCCTATGGGTACACACCATTCTGCGACAGCCGAAAAGAAATGGAAGGATATCGTTTTTGGAAGACTGGCTACTGGGCTTCTCATCTTGGACACAGGAAATACCACATCAGTGCATTATATGTGGTGGACTTAAAGAAATTCAGAAAGATCGCCGCTGGAGACCGCCTCAGGGGGCAGTATCAAGCCTTAAGCCAAGATCCCAACAGTCTGTCCAACTTGGACCAGGACCTTCCCAACAACATGATCCATCAAGTAGCCATCAAGTCTTTACCTCAAGAGTGGCTGTGGTGTGAAACCTGGTGTGATGACAAATCCAAAACTACCGCCAAGACCATAGATCTGTGCAATAACCCAAAGACCAAAGAGCCCAAGTTAAGTGCAGCGGTGAGGATTGTTTCAGAATGGTCCAAGTACGACAATGAGATAAAGCATTTTCTCAAACGGGTGaaggagcagaaggagaaaatTACTAAGGGTagatcttcatcatcatcatcatcttcatcaccaCAGCACACAGGCACTCGACGTGATGAACTTTAGCACTTGAGTGCTCATGCTGGCACCTATCTTACTGTGAATCTTGAGTTCAACCAGACAGAGGTGTTTTCCACAACAGGAACAATGAGGAAATAAACACaaggaaacattttaaaggacttcatgacatattttatatatgcgaTACTGAACGGTTTGAAGGTTTAGTGTGAGTCCTCTCGCACTTCAAGATGTAAACTGtataaataccttttttttttttcataaacaattgttgtgaaaaaaattacaattattgcAGTGTTATCTGAAATTTTTGGCCAGTTAATGAAATAACAATTGCACTGGTGTATATTTATGAGGGACAAATATGTCAATATCGTGTACATTCCTTCAGAGActataaatgtttatactgTTTCACAGTTCATTTCACATGGCCTTTTTGTAACCGTTTCAGTACATATTCTGCCAtcatattttaacagtatttgTTATTGAAAGATATGTGACTGCAAATTGTCGatttaaatcaaaaatctcactaataaattcacttttaaattGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102406 lncRNA downstream 84886 10445277 ~ 10446767 (-) True G69231
TU102394 lncRNA downstream 87012 10444293 ~ 10444641 (-) True G69228
TU102379 lncRNA downstream 105188 10426227 ~ 10426465 (-) True G69223
XR_006251782.1 lncRNA downstream 268206 10253933 ~ 10263447 (-) True LOC122351639
TU102286 lncRNA downstream 289441 10173936 ~ 10242212 (-) False G69157
TU102549 lncRNA upstream 282404 10837512 ~ 10844040 (-) True G69346
XR_006251830.1 lncRNA upstream 294715 10849823 ~ 10908594 (-) False LOC122352018
TU102556 lncRNA upstream 294715 10849823 ~ 10891473 (-) False LOC122352018
XR_006251829.1 lncRNA upstream 328547 10883655 ~ 10908594 (-) True LOC122352018
XR_006251756.1 lncRNA upstream 375372 10930480 ~ 10946744 (-) False LOC122351427
XM_043249146.1 mRNA downstream 12196 10515272 ~ 10519457 (-) True fdx1
XM_043249142.1 mRNA downstream 27187 10487697 ~ 10504466 (-) False rnf17
XM_043249141.1 mRNA downstream 27187 10487697 ~ 10504466 (-) True rnf17
XM_043249740.1 mRNA downstream 54913 10462995 ~ 10476740 (-) True mcf2lb
XM_043248816.1 mRNA upstream 51086 10606194 ~ 10609391 (-) True LOC122351611
XM_043249417.1 mRNA upstream 125050 10680158 ~ 10686627 (-) False mrasa
XM_043249418.1 mRNA upstream 125050 10680158 ~ 10685326 (-) True mrasa
XM_043249489.1 mRNA upstream 274806 10829914 ~ 10833116 (-) True zgc:162780
XM_043249490.1 mRNA upstream 278154 10833262 ~ 10835970 (-) True zgc:162396
XR_006251803.1 other downstream 12196 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 89781 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other downstream 89781 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other downstream 89781 10433507 ~ 10441872 (-) True trim13
TU102057 other downstream 621475 9908188 ~ 9910178 (-) True LOC122351483
XR_006251823.1 other upstream 125050 10680158 ~ 10686627 (-) False mrasa
TU102802 other upstream 941902 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 1611883 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1867321 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 2153523 12708631 ~ 12711824 (-) False LOC122351186

Expression Profile