RNA id: XM_043248821.1


Basic Information

Item Value
RNA id XM_043248821.1
length 2490
RNA type mRNA
GC content 0.45
exon number 6
gene id rab5b
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11210200 ~ 11216654 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTTGACCCGTGTGGCTCAGTGCGCATGCGCGGAGGTGCAGGAAGTGCTCGCAGCAGACCGATAACCAGCTGATAGATCAACAACCGAACAGCCGCCACCAAAACAGCCGCGACTGGCGACAACAGCATCACAGTCTGACAGCTGTCCTCACAACTTTAGAAGAAGTCTCCTGTactaaaaaaacccaaaacaacaGCTTGTCTGCTTTGAGCTGCTGCTTTTGGAGACGCTGTCAGGGAGGACGGCCACCCTTCCTACATCATGAGCACTCGCGGGACCGGCAGGGCCAATGGAAGCCTACCGCAGACCAAGATCTGCCAGTTCAAATTGGTGCTGCTGGGAGACATGGCTGTCGGCAAGTCCAGCCTAGTGCTGCGCTTTGTTAAGGGCCAGTTTGACGAGTTTCAGGAAACCACCATTGGAGCTGCTTTCTTGGCACAGTCTGTTTGTCTGGATGACACTACGGTGAAGTTTGAGATTTGGGACACAGCCGGACAGGAGCGCTACCACAGCTTGGCCCCCATGTACTACCGTGGAGCCCAGGCGGCTATTGTAGTTTTTGACATCACCAAGCCTGAAACATTTGAGCGAGCGAAGGCTTGGGTGAAAGAGCTGCAGCGGCAGGCCAGTCCCAACATCGTCATTGCTCTCGCAGGAAACAAGGCTGATCTAGCGGATAAGAGACTCGTGGAGTATGAGGAAGCACAGACATATGCAGAAGACACAGGCTTGCTTTTCATGGAAACCTCTGCCAAGACTGCAATGAATGTAAACGAGTTGTTCCTGGCCATTGcaaagaAGATGCCAAAAACAGACACCCAAAACCCCACGCATGCTGCCCGACACAGGGGGGTAAACCTGCAGGACCCAGACGCACAGTCCACTCGAAGCTGCTGTGGGAACTAAAGGCCTGTCAACACTCCATCACGGGAGACCACCGACACCTTCTCCTTCCCAAAATCCCACCCTTCACCTTTTCACATCCTTCTAAGACGGATACGGAAAGAAACCGAAAAGAGAGAGGAATAACAGAAAGAGATTGAGGGGAAAATCCCTCAGTGATGCCATAAAGAGATTTTCCAAGGAAGACTTCTGATGGTCAGGGCAGAAAGTGAACGGACGATGGACGCTGTCATGTCTGGCAGTATAAATGgattctgtattatttttaaatcgaTAATTTTAGCCTCTGTTCGTTTTCATTATGCAAGCAACAAGGTGTCACCCAAAGAGAAAAGAGATACAGGAACACAGAATTATTTCATCGACAAATCCCGTTCTCAGTCCTGGATTGAACCGAGATGATCCACAACGTCCCCCTCAAAACAGAAGTCTTCAAGCCTCCGTATTTTATCCATTAAGAGTATCCGTATGCTCTAGGCTCCCAACTCTTGATCCCAACTCTAGCACTGGAAGGACGTCAGCACCTTAATCTAAACTAACCCTTGCAATTGTTGAAGCACGAGCCACATCTACTAAACTTTTAAACTACAAAAGGAACACTGAAGCAGTTTTTCATTCAGCctgagcttgttttttttttcagcctccAGCTTTATTTATTACCTTTATTTGAACTGGTCTCCCTTACGTAACTCGTCATTCACCTTACACCCAGAAAGTATTGAACATCAGCGTCTTCCCTATAACATTTCCTTCTCCCAACCACTCTGACCTTGAAGTTCAGTGTTGAAGTTAACGAAACAACAGCAAGCTCTACGATGCCTTCTCTACGTTCTGGTCGCTTTGTGTAAACTACTGTTTGagaaacaatcaaaaaaaatcattacaccATGTTGGCAGCAACCAGATGACTGATCGCAGACCATTTCGCTTCACACATACTCGCAGAATAACGCACATTGATTCGTCTGGAAAAGGAAGTCATGCAATACCAGGCCAGTGTCTCAGTATGTGTTattaaaaagcaacaaaaaaattcaagcaCCCGCAAATCAACAAGGTGAAGGATTTAGCAACCAGTGTTGTGCGATACGTCAGGACGGCAAATAGCAGCAAGGGAATTTTTGGCCCACAAAGCCCctgaaaaagtggaaaaaaacagaagtgcCTACTCCGTTTTTTCCGTGTTCTTTGTTTTGGGCTTGTTTGAGGTCGTCAGACCCACGAAAAGTAGCGTTTCGAGATGTTGGCCCGAAGTGTACAGGCAATAACCTGTAGAAAATAATTAGTTGAGCGTGTTAGTAACAGTCATTTATGAAGTTTTGTTTTATGGATGCCGTTTGTTGATgtgtataaaaatgtgttttatttaaaattgattttagtcAGCAATTTAATGGGttacaaatagttttttggtCATTTAGGGAATGAATTAGGTATCATTATATGGTGTCACACAGCTAGAAgtcatttgtcatttgttttcagGTCCACCTTTTTTGTGGAATAGATCTGATCTCCTGTTAACACCTCTGTGaactgaaatgttaaataaagctGTGCTGTTCTGCTATGAATGAAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102615 lncRNA downstream 179707 11029377 ~ 11030493 (-) True G69396
TU102576 lncRNA downstream 256215 10947044 ~ 10953985 (-) True G69362
XR_006251756.1 lncRNA downstream 263456 10930480 ~ 10946744 (-) False LOC122351427
TU102742 lncRNA upstream 142296 11358950 ~ 11365819 (-) True G69467
TU102798 lncRNA upstream 180022 11396676 ~ 11493120 (-) False LOC122351858
XR_006251827.1 lncRNA upstream 574127 11790781 ~ 11954234 (-) True LOC122351998
TU102924 lncRNA upstream 869060 12085714 ~ 12156439 (-) False G69596
TU102926 lncRNA upstream 869060 12085714 ~ 12156439 (-) True G69596
XM_043249581.1 mRNA downstream 5232 11193693 ~ 11204968 (-) True armc8
XM_043249582.1 mRNA downstream 5258 11193693 ~ 11204942 (-) False armc8
XM_043249406.1 mRNA downstream 113519 11089670 ~ 11096681 (-) True idh1
XM_043249268.1 mRNA downstream 124290 11051094 ~ 11085910 (-) True plekhm3
XM_043249269.1 mRNA downstream 124290 11059233 ~ 11085910 (-) False plekhm3
XM_043249309.1 mRNA upstream 9302 11225956 ~ 11231688 (-) True lcmt2
XM_043249223.1 mRNA upstream 169723 11386377 ~ 11389378 (-) True tlr20.4
XM_043249222.1 mRNA upstream 175586 11392240 ~ 11396663 (-) True LOC122351856
XM_043249224.1 mRNA upstream 180012 11396666 ~ 11399215 (-) True LOC122351858
XM_043248236.1 mRNA upstream 183897 11400551 ~ 11404296 (-) True gtpbp8
XR_006251823.1 other downstream 523573 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 690743 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 768328 10433507 ~ 10441872 (-) False trim13
TU102802 other upstream 280356 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 950337 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1205775 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 1491977 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 1521390 12738044 ~ 12738171 (-) True LOC122352189

Expression Profile