RNA id: XM_043248834.1


Basic Information

Item Value
RNA id XM_043248834.1
length 5546
RNA type mRNA
GC content 0.52
exon number 17
gene id raph1a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7962407 ~ 8017887 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGGGCGCAATCACATGGATTTCGGGGCTGGACAGGAAACGGAGACGCCAGGAACGCGCATCGCTCCGCAGCTCAGAACGGGAATGGAAGCGGGAGAGGAACGGGAGGCTCGCTCGTCTCATCACCACCCTCATCCTCGGCGAATATAAGCGATCGGCGCGGGAAGCGAAAGCCCGATCGAGGCGGACAGGAGCGGGGAATCTATCGCTGGATTTGCGCGACACGCCAGTGGCTTTCCCCCCATTGTTAGCGTTTCCTTCGCGCAAGACAGAAGCCGCAGAACCGTCGGCTGGTTTGCGACAATGGAGCAGTTTTCGGATGACGAGCTGGATCACGCTGCAGAGGAAGACAGCGATAAAGAGGACCAGGACCTGGACAAAATGTTCGGAGCATGGCTGGGAGAGCTGGACAAACTGACAAAGAGTCTAGATGACGGGAGACCGGAGAAGGTGCAGAAAGCACCTCTCAGACAAGAGACGAACATGGCCAACATGGCCTACCGCTTCTCCATTTATAACATCAACGAGGCTCTGAACCAGGGTGACGCAGTGGACCTGGATGCTCTGATGGCGGACCTCTGCTCCATCGAGCAGGAGCTCAGCACCATCGGTAAGCCTAGCAGCGCTTCCTCTCGCCTTGGCCTGACCGGGGACACCAAAGTGCGTCAGAAGCCCCCGGCCGGACGCAGTCACAGCACCAAGCACACGGGCAGCAGCAGCGGCGGGGCGAGCAGCAGCGGAGGCAGCACCAGCAGCAGCACCCGCGCCTCTCCCGCGTCTACCGTCAGGGTGGGCAGCTCCAGCAGCAGACCCCCGCTGGCATCCAACTTCTCCCTGGATGATATCACGGCCCAGCTGGAAAAAGCCTCTCAGAGCATGGACGATGCAGCAAGGCAGAGCTCCACATCCTTCGGCTCTGCCATGTCAGCACCGTACTCTTCCTCCACCGTGCGCAGGCCGACCTCCCATCATCATCACCGCAGGACGGGGTCGGTGGGTACGGTCACCGAGCATGAGGTGCGGTCCTTTGTCCATTCCTCTCGCTCTAGCATTAACTCGGCCTCTGCATCCAGCATGGACTCGCTAGACATCGAAAAACCCAAGTCCGATCAGGACGGGTTGCAGGACGGACAGGAACAGCCGAGCTCAGAGCACTCGTATCTGGACAGGGAGACTTCTCTCATTCTGAAAAGCATTGCAGGAAAGCCCTCTCACTTGCTGACCAAGgAAGAGCAAGCTGCCAAACAAAAAGCTGAGAAGATCCGAGTAGCTCTGGAGAAGATAAAGGAAGCACAGGTGAAAAAGTTGGTAATCCGAGTGCACCTATCAGATGAAAGCTCGAAGACTATGATGGTGGATGAGAGACAGACGGTGCGTCAAGTGCTGGACAACCTGCTGGATAAATCTCACTGCGGTTATAGCCTGGACTGGTCTCTGGTGGAAATCATCTCTGAACTCCAGATGGagagaATCTTTGAGGACCATGAGAACCTGGTTGAGAACTTGTTGAACTGGACCAGGGATAGCACCAACAGACTGATGTTCATCGAACGCATTGAGAAATATGCACTTTTCAAGAACCCTCAGAACTATTTGCTGGGGCGCAAGGAGACGTGTGAGATGGCAGACAGAAATAAAGAGGCTCTTTTGGAGGAGTGTTTTTGTGGAAGCTCTATAAGTGTGCCTGAGATGGAAGGGGTGCTCTGGCTCAAAGACGACGGCAAGAAATCTTGGAAGAAGCGCTACTTTCTGTTACGAGCCTCTGGGATATATTACGTGCCAAAGGGTAAAGCCAAGGCCTCTAGAGACTTGGTTTGCTTCCTGCAGCTGGATCATGTTAACGTGTACCTGGGGCAGGACTACCGCAGCAAGTATAAAGCCCCAACTGACTACTGCATGGTCCTGAAGCACCCACAGattcaaaaaaaatcacagtacaTCAAATACCTGTGCTGTGATGATGTCAGAACGCTGCATCAGTGGGTCAATGGAATACGCATTGCCAAGTACGGGAAGCAGCTGTATGTGAACTACCAGGAAGCCATGAGACGCACAGAGGCTGCTCATGACTGGTCCTCCCTCTCCAGCTCCAGCATCAAGTCTGGTTCCAGCTCCTCCAGTCTACCAGAATCCCAGTCCAACCACTCAAGCCAATCAGACAGCGGTGTGTCAGAGACCACCTCCTCTGGTCACGTGCGCTCTCAGAGTGTCGTCAGCTCCATCTTCTCTGAAGCATGGAAGCGAGGAAATCAGACGGATGAACCCAAGATGAGAATGGATGGCCCACCACCACAGCCTACTAGAGCCTCTTATCCTCTTCAACTTCCTCAGCTACCCCAGTCTCTCCAATCTCGTAGCAGCTACAGTGGTGTGTCCCCAGTTTCCCCCTCCTCGCCCCCATCTCCACCACCGCCTCCACCACCTCCCCCTCTCCCCAACCCAACGCACCACTCCACCCCGGTTATGTTCACTAAATACAGCACCCTCGCTAGGTTGCAAAACATCTCCCAGGCTCCAAATCATTACAAACAGACCCCCTTATTGGCAGCACAACAGCAACCCATGCCCCCAACACCCCCACAGTGTCTCAAACCTGCAATGAATAATACGACAGACACTGCCAGCAGTCCGCCTCccccaccaccaccacctccagAGGTGCCAGTGCCAGGGTCAGCCATGGCGGTGTTGAAGCATGCCCCCGTCAGCCCCCAATATGCTCCCCCTCCACCTCCAGAGGAAGACCAGCTGCCACCCCCACCTCACCAACACAGCAATGGCTACTTGCCTCCACCACCACCCCCAGAACAGTTAAAGTACCCGCCTCCCCTCAGCACCAACGGGCTCCAGCAGTTCTTAGCTCAGAAGTTCCCTAACATGACCTATGACTTCTCATCTGTCCAACAAGACGAAGAgcctccaccacctcctccgGTGTGTTTCTCTCCAACCCCTCAGCAGTCAGGTCCACCTGCCCCACCTAAAACATTCACTGGTGGATTTCCACCCCAAACGGCTCCGAAACCCGCTCACGGCATTTCCCCCATTTGCCCTGTGCCACCTTCTTTGTCTCCAACCCCTCCGGCCACCATGAAGAAACAGCAAAGCCTCTCTAGCGGTCACAGCCCCAATCAACCTCCACCTACCCTCCCCAAGCAATATAGCCTTTCTTCCAAAGCTACATCTGTGTCTGCCCCCATCTCTCCCACCCAATCGCTTGTGAAGCAGATTGTAAACCAGTTCCCTGACGCACCTGATGGATCCAAAGGTCCCATATCTCCTCCTGTGGTAAAAACCAAACCGAAATGGCAGCCGGGAGGGCAGGCTCAACCACAATCTCCCGAAtttcctccacctccaccagaGAGTACCCTTGAATTCCCTCCACCTCCTGCTCCAAGTCCCCCTCCTGCCCCACAGCCTTCTGGCAAGACGGGATCTCCAATCAAGAAGTCTCCATCAACGTCGTCAAACTCTTCTACTGGTTCAGGAGGAAAGAAACCCCCTCCAACTCCACAGCGGAACTCCAGCATGAAGTCCACTTCTTCTGTTGAGTACCAGGAGTCCAAGAAAGTGGAGGATCTGGTCAGCATGTTTGCCCAAACCAGTCAAGCCCCACCCAGTTCCTTCTCAACTCCATCCTCTACAACAGGATCGCCTTCCAAGGACACCTCCACCGGACCTCGCGCACCACCAAAACCAGGCAAGATCAACTTGGCTAATCTGCCTCTGGCTCTCCAGGGAAAACAAGGTCAATATCAGCAATCCAGCACAGACTTCCCTTCTCCTCCTCCCGAATGTGACTTTCCCCCTCCGCCGCCGGACTCAGAACTCCTGCCTCCTCCACCTCTCCCAACAGAACTGCACACCGGGGCTCCCAAAGTGGCCGTGGTGAACCCTCAACCCCAGCACTCCTCCAGCTCCACATCCTCATGGAAGCAAAGCTCCTTAAAGAAAATGCCCCCTCCGACTATGCACCGGCGCAGCAGTGGCCCACCCGAACCGCTTGTCCTTTCTCCACCTCCTCAACAGATGCCTCTGTCCTCTTTTAACTCTCAGATCCCACCAACTTCCCCCAAGGCCAGTCTGTCAGTCCAGCCCAACTTCTTGGAAGACCTCAATAGAACTCTGAAAAGGAAGTCCATGACTCGACATGGCTCCCTCACATCCTCGAGGATCTCAGCCAAGCTGGAGCCGGTAACAACCATGGACGATATGGCCCTTCCGCCCCCTCCTCCAGAGCTGCTGCTGGGCCAGCAGAAAAAGGGCGGATACATGAGCGCCAACATCTCAGGCTATGCAACATTACGGCGGGGTCCTCCGCCGGCGCCACCCAAACGGGACCAAAACACTAAACTGACAAGCGAGTGGTAGTTGGGACATGTGCCGAGTACGGATATGCCACTCTCCTTTTCCACTCTGTTTATCTTCAACAGCTGAAACGTCTGCATTAAAATACAACTCATTTTAACCCCAGATTATAACCACAATAAGAAAAAGCCAAACCATCTATACATAAGCTTCTCTGCGTGTTTGTGCTGCTTTGCTATTAAGTGTAGcagatatacaaaaaaaaaaaaaactgagaaaaagagaCTGACATTGTTATTATAGGTACTGCATGGACACTGCTGTGAGGAAAGGggataatgtatatgtatgataaaatatatatgtggaACAGTGGGGTGGGAGGGGAACTTGtacttttttatatgaaattatttaatacctgaaatatattcttattttaaagtttagttttgAAACCCTTGACTGTAAACGTTAAACGTGAATAGAAAATCAGGGTTGTTGAACCGAtgcttgtgtgtgcgtgcgcgcatTTCGTCTGAGTGATTTGGTTGATCCACTCTCAGAAAAACAGCGAGGGGCTGGGTGATAGTGCCTCCCTTGCTTGTCATTAGATGTGCAAATCCCAGTGTGGGAACTACACCTGTGTAGCATACATTCTAAATGAAGTATTCTACCAAACTTtccacatttaatttaaatggtttaGAAACTTCCACTTAAAAtgtcaagaaagaaaaaaacagctacCATTGTTATTGATGAATCTGTTATGTTGTGTCGCTGTGGACCCTTACTTTTCATGAAGATGTCCAAATGTTAGATGAAAATGAGCCTGTTGCCGCTCGAGTACATCTCAGCGTGTATCTGGCCTGTGGATGGGATGTGATGTCTGTTTATGTTGGTTACATTTGCTATCTATCTGTACATACAGCTGCAGTTCCTGACTTTATCAATGTGCGTTAGCTCTGCATGAGTGAAACACACACTAGGAAGTGATGTCGTTCTCTTTTTTTGACCTCTGTCTATACTCAGTGCTGTATTGAAGTGTGTCACATATCTGGATCATCTATTTCTCATGTCATGGCAATGCCACAATGTACTGACGTTAATCTAGCATGCATGCTTCCATAGTATGGTTGCCTAAGATTGAACACTTTGTAGGGTTTTAGGACCATAGCCACAAAATAAAAGGTGTCATGTCAAGTTTACTTGACTtacaatgcaaaaaattca

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K23488 RAPH1; Ras-associated and pleckstrin homology domains-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101216 lncRNA upstream 108129 7853481 ~ 7854278 (+) True G68446
TU101200 lncRNA upstream 626048 7335491 ~ 7336359 (+) True G68435
TU101154 lncRNA upstream 660912 7298033 ~ 7301495 (+) False G68397
TU101158 lncRNA upstream 664122 7280767 ~ 7298285 (+) True G68397
TU101189 lncRNA upstream 698694 7262541 ~ 7263713 (+) True G68424
TU101545 lncRNA downstream 185966 8203853 ~ 8205963 (+) True G68668
TU101562 lncRNA downstream 204700 8222587 ~ 8222817 (+) True G68678
TU101678 lncRNA downstream 484869 8502756 ~ 8506143 (+) False igf2bp2a
XR_006251751.1 lncRNA downstream 582837 8600724 ~ 8614984 (+) True LOC122351403
TU101758 lncRNA downstream 808325 8826212 ~ 8827046 (+) True G68808
XM_043248743.1 mRNA upstream 23905 7921678 ~ 7938502 (+) True fer1l6
XM_043248749.1 mRNA upstream 41845 7908087 ~ 7920562 (+) False prkag3b
XM_043248748.1 mRNA upstream 41845 7908256 ~ 7920562 (+) False prkag3b
XM_043248754.1 mRNA upstream 41845 7908328 ~ 7920562 (+) False prkag3b
XM_043248751.1 mRNA upstream 41845 7908330 ~ 7920562 (+) False prkag3b
XM_043249764.1 mRNA downstream 152279 8170166 ~ 8172963 (+) True fzd7a
XM_043248190.1 mRNA downstream 158948 8176835 ~ 8202936 (+) True LOC122351256
XM_043248191.1 mRNA downstream 158948 8176835 ~ 8202936 (+) False LOC122351256
XM_043249064.1 mRNA downstream 323408 8341295 ~ 8342751 (+) True si:ch211-167j6.3
XM_043249065.1 mRNA downstream 323408 8341295 ~ 8342751 (+) False si:ch211-167j6.3
TU100736 other upstream 1997527 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 2076654 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 2504878 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 2505144 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 2505564 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 323411 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 413258 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 846762 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 1124705 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 1124705 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile