RNA id: XM_043248848.1


Basic Information

Item Value
RNA id XM_043248848.1
length 6958
RNA type mRNA
GC content 0.51
exon number 54
gene id zmp:0000001200
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4870192 ~ 4921556 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgagcgtgtgtgttttggagaGAGCAGCAGGCTGCTGGACATGCTGAGATCTGCCTGCCGTCTGGGATCTTGAGAGGAGCGCTGTGATTCGTGTCGCTCCGCAGGCGCACGGATGAGGAGAGCTTATCTGACAGAAAGGGTTTGTAGCCATGCAGGGCAAGACGgggaaagcgcccaagaaggAGCTGGTGATCGAGTCTCCTCAGCAGTTTAAATATGTTCCTGTGCTGGAGGAAGAGCAGGACGGTGCTGGTCCTCAGGGGAAGgtgAAGCCGCGTGTGGTGGAGCCTCTGGACTATGAGGGTGTGCTGGTGCAGAGGAAGACTCAGATCCTCAGCGATGGACTCAGGGACATGCTGCAGTTTCCTCTGGAGGATTTTCAGGTGTGTACACTGCCACGACAGATCCGGACGTTCTACCCCTCCATTCCTCCACATGCACTGAGAGAAGCACAGAGTCTGTTTGTACAAgagTGCATCAAGTCTTACATCTCCGACTGGCATGTGGTCAACTACAAATATGAGGATTATTCCGGTGACTTCCGTCAGCTTCCCAACAAAGTGTCCAGACCTGATAATTTGGCCCAGCATGTCTTTGAGGTGGATGAAGACGCAGATAAAGATGAGgaCACTGCCTCTCTTGGCTCCCAGAAGGGTGGTCTCATTAAACAGGGCTGGCTACATAAGGGCAACATGAACAGCGCCATCAGCGTCACCATGAGGTCGTTCAAAAGAAGGTATTTCCACCTGACGCAGCTGGGCGATGGCTCGTATAATCTCAACTTCTACAAGGATGAGAAGATCAACAAAGAACCCAAAGGAACCATCTTCCTGGACTCTTGTATGGGAGTGGTGCAGAACAACCGTGTGCGGAGGTTTGCGTTCGAGCTGAAGATGCAGGATAAGAGTGGCTACGTTCTGGCCGCTGACTCTGAGAGCGAGATGGAAGACTGGATCAGCACCCTCAACAAAATCCTCAACAGCAGCTTTGAGCTCGCCATGCAGGACAAGAGGAACGGAGACTTGCacgatgATGATGAACAGTCGAAAAGCGATCACTCCTCCAGCAGTATGGACAGTTTTCAGAGTGCCAGAGACATCGAGAGCAAGATGAGAAATGAGACACGGCTGAAGCTCTTTACACTGGACCCAGACTTACAGAAACTGGATTTCTCTGGGATCGAGCCAGATGTGAAGCCCTTTGAGGAGAAGTTTGGGAAGCGAATCCTGGTGAACTGTAACGACCTTTCCTTCAACCTGCAGAGCTGCGTGGCGGAGAATGAAGAGGGGCCAACCACTAACGTCGAGCCCTTCTTCGTCTCTCTGTCATTGTTCGATATTCAAAGTGGACGCAAGATCTCCTCGGACTTCCACGTGGATATGAACCATCCGTCAGTGAAAGCGCTGCTGCCCCCGGCGGGAGCTCACAACAGCAGCGCAGCGCCGGAGAGCCCACAGACAGCTCAACCCACAGCCAGCAGCCTGACGGAGAGCGCCGTTCAGTTTCCACGACAGGGAGTGTTTTCGGTGACCTGTCCGCACCCGGACATCTTCTTGGTCGCTCGGATAGAGAAGGTCTTACAGGGTGGCATCACACATTGTGCCGAGCCTTATATGAAGAACTCTGACTCTGCCAAGGCAGCTCAGAAGGTTTTGAAGAACGCTAAGATGGCCTGCAGCCGGCTGGGTCAGTACCGGATGCCGTTTGCGTGGGCCGCTAAGCCGCTGTTTAAGGACGCCTCTGGGACGGTGGACAAGAGCGCTCGGTTCTCGGCTCTCTACCGACAGGACGGCAACAAGCTCTCCAACGAGGACATGTTCAGACTGCTCGCGGACTTCAGGAAGCCAGAAAAGATGGCCAAGTTGCCGGTGATTCTGGGTAATTTGGACGTCACGGTGGATAACGTCGCACCGGATCTCGCCAATTGCGTCACGCCGTCCTATCTTCCTCTTCGTCAGACGGAGGTGGCGGACTGGAGCAGGATGGTGTTCGAGGTGGAGGAGTTTGTGCCGTCTATCGCTAAATGCTCCCAGCCTTTCACAATTTACAACAACCACCTGTACGTGTATCCACGACATCTCAAATACGACAGCCAGAAGAGCTTCACCAAGGCCAGAAATATCGCTCTGTGTCTGGAGTTCAGAGATTCGGATGAAGAAGACGCTCTCCCACTAAAGtgtatttatggGCGTCCAGGAGGGCCTCTGTTCTGTAAGAAAGTATTTGCTCCGGTCTTACACCACCAGCAGAACCCAGAGTTTTATGAAGAGTTTAAGATAGAGTTGCCGGCTCAGCTGACGGACAGACATCATCTTCTGTTCACTCTCTATCACATCAGCTGTGACAGCAACAGCAAAGCCAGCACTAAGAGACGAGAGCAGGTGGAGACACAAGtgggTTATGCGTGGCTCCCTCTGCTGAAGGATGGCAGAGTCATCATGAATGAACAGCAGGTGGCAGTGGCTGCAAACCTGCCTTCAGGTTACCTGAGCTACCAGGACAACAGCAGCAAGcaGCACACAGGTCAAGAGGTGAAGTGGGTGGATGGTGGTAGGCCTCTGCTCAAAGTCTACACACAGCTGGTGTCCACTGTATACACACAGGATCAACACCTGCATAACTTCTTTCATCACTGTCAGAGCACTGAATGCACAGGCCAGTCGGGAGGAGAGCTGATCAAATACCTGAAGAGTCTGCACGCCATGGAGGCTCACGTGATGGTCAAGTTCCTCCCCACAATCCTGAACCAGCTGTTTCGTGTGCTCACCATCTCCGGTCAGGATGATATTGCCGTGAACGTCACCAGGGTGATGATTCATGTCGTGGCTCAGTGTCATGAAGAGGGTCTGGAGCATCACTTGCGTTCTTATGTGAAGTACGTTTTGAAGGCTGAGACCAACTTAAGCAATGGTAAAACGGTCCATGAGGAGCTGGCCAAAGCCATGATGACCATCCTGAAGCCCTCGACCGACTTCCTCACCAGCAACAAACTACTGAAGTACTCCTGGTATTTCTTTGAGGTTTTGGTCAAGTGTATGGCACAGTACCTGATTGAGACAGGCAAGGCCAAGGTGTCTAGGAACCAGCGTTTCTCAGCTTCGTTCTATCACTCCGTGGAGACCTTGGTGACTATGCTGATGCCTCATATCACACAGAAATACAAAGACAACCTGGATGCCACACGAAACGCCAATCACAGCCTTGCTGTCTTCATCAAGCGCTGCTTTACCTTCATGGACAGAGGGTTCGTCTTCAAGCAGATCAACAACTACATCAGCTGCTTCATGCCCGGAGACGCAAAAACGCTGTATGAGTTTAAGTTTGAGTTTCTGAAGGTGGTGTGTAATCACGAGCACTACATCCCTCTCAATCTGCCCATGCCGTTTGGGAAGGGCCGGATCCAGCGCTTTCAAGATCTTCAGCTGGACTACTCTTTAACGGACGACTTCTGCAAGCATCACTTCCTGGTGGGGCTGTTGCTGAGGGAGGTGGGTGGAGCTGTGCAGGAGTTCAGAGACATCCGTCAGATCTCTGTACAGGTGCTGAAGAACCTGATGATCAAGCACACCTTCGACGACCGTTACTCATCCAAGGGTCAGCAGGCTCGCTTGGCTACGCTTTACCTGCCTCTGTTCAGTCTGCTGCTGGAAAACGTCCACAGGCTCAACATCAAAGACGTGCCGCCCGTCACCAACCAGACTAACATTAATGGCCGTGATGAACATGTCATGATGACCCCTACAAAAAGTACAGCCAGTCCGGTGGACAGCAGCCTGCATAAAGAGGTGTTTGGAGTGATTTCAGGAACAGtCTCTCCTCACACTCCGACCGTGAGCTCTGTACGACACACTGACTCACGCAGCTCTCTTATCAGCACCGACTCTGGAAACGGCCTATCAGAGCGCAGCATTGACAAGCCACACCCCCTAGACAAGTGTCATGTCGCTGGGGTTCTGGGCAGCTCTTTGCTCCGCTGTGATAAATTGGACCAATCTGAAGTGAAGAACATATTAATGTGCTTCATGCACGTGTTAAAGAGCATGTCtgaagATGCTCTGTTCAACTACTGGAATAAAGCTTCACCCACAGACCTGATGAATTTCTTCAGTCTGCTCGAAGTGTGTCTTCATCAGTTCAGATACATGGGAAAGAGACACATTGCAAGGACTCTGGAGGGATCAGGGCCGGTGGTTCACGAGCGCCGCTCTCAGACTCTTCCTGTGTCCCGCAGCAGGACAGGAGCCCTGCATATGAGACTACAACAGCTTAACAGCCTGGACAACTCTTACACCTACAACCACAattACAGTCATTCAGATGCTGATGTGTTGAATCAGTCTCTGTTGGAAGGAAATATTGCCACAGAAGTTTGTCTAACAGTTCTGGACACACTGAGCATCTTCATCATGGGCTTTAAGACTCAGCTGAGTTTGGATCACGGCCACAATCCACTCATGAAGAAGGTCTTTCAGGTTCATCTATGCTTCCTacaaatcaaccaatcagagacGGCCCTCAAGCAGGTCTTCACTTCTCTTCGCACTTTCATCTATAAGTTTCCATGTACGTTTTTCGAGGGCCGTGCGGATATGTGTGCGTCTTTCTGCTACGAGATCCTGAAGTGCTGTAACTCCAAACTGAGCTCCATCCGCAGCGACGCGGCTCATCTGCTCTACTTCCTGATGAAGAGCAACTTCGACTACACTGGACGCAAATCCTTCGTCCGCACACACCTGCAGGTGGTGATTGGCGTCAGTCAGCTGATCGCTGACGTCATCGGGATAGGAGGGACGAGGTTCCAGCAGTCGCTGTCAGTCATCAACAACTGTGCCAACAGTGACAAAACTATCAAAAACACAGCGTTCCCATCTGATGTGAAAGACTTGACCAAGAAGATCCGCACTGTTCTGATGGCCACGGCTCAGATGAAGGAGCACGAGAGAGACCCCGAGATGCTGGTGGACCTGCAGTACAGTCTGGCCAAGTCCTACGCCAGCACTCCTGAACTCCGCAAGACGTGGCTGGACAGCATGGCCCGTATCCACGTGAAGAACGGAGACCTGTCTGAGGCAGCCATGTGTTACGTGCATGTAGCAGCGCTGGTGGCCGAGTACTTGAGGAGgaaaggcacGTTCAAACAGGGCTGTACTGCGTTCAGAGTGGTCACACCAAACATCGATGAAGAAGCGTCCATGATGGAAGACGTGGGCATGCAGGACGTTCACTTTAATGAGGACGTCCTGATGGAGCTTTTGGAAGAATGTGCTGATGGTTTATGGAAAGCAGAGCGTTATGAGCTCATCTCTGACATCTACAAACTCATCATTCCCATTTATGAGAAGCGCAGAGATTTTGAGAGGCTGGCTCACCTCTATGACACCCTGCACCGGGCCTACAGTAAGGTCACAGAGGTCATGCACACGGGCAAACGCTTGCTGGGAACCTATTTCAGAGTAGCGTTCTTCGGTCAGGCAGCGGGGTTCTTCGAGGATGAAGACGGTAAAGAATACGTATATAAGGAGCCCAAATTCACCCCGCTGTCCGAGATCTCTCAAAGACTCCTCAAACTGTATTCAGACAAGTTTGGAGCTGAGAATGTCAAAATGATCCAGGATTCTGGCAAGATCAATCCGAAGGATCTGGACTCTAAATACGCCTACATCCAAGTGACTCACGTCACCCCGTTCCTGGAGGAGAAAGAGCTGCTGGAGAGAAAGACGGACTTTGAGAGGAGCCACAACATCCGCCGATTCGTCTTTGAGATGCCGTTCACCGTTTCAGGCAAAAAACAGGGCGGCGTAGAGGAGCAGTGCAAACGCAGGACTATACTCACCACCACGCACTGTTTCCCGTACGTGAAGAAGCGGATCGCGGTCATGTATCAGCACCACGTGGACCTGAACCCCATCGAGGTGGCGATTGACGAGATGAGCAAGAAGGTGCTGGAGATCAGACAGCTGTGTTCCTGCAGTGATGTGGACATGATCCAGCTGCAGCTCAAACTACAGGGCAGCATCAGCGtgcagGTAAATGCTGGGCCCCTTGCTTATGCCAGAGCTTTCCTGGATGATGCCAGCACTAAGAAGTACCCAGACAACAAAGTCAAGCAGCTGAAAGAAGTGTTCCGGCAGTTTGTGGAGGCGTGCGGTCTTGGTTTAGGTGTTAACGAGCGTCTGATTAAAGAAGATCAGCAGGAGTATCATGACGAGATGAAGGCCAACTACAGAGATCTCACGAAAGAGCTGTCCACCATTATGCATGAGCCTATCAGTCCAGTGGATGATGGGATGCGCAGTCCTCTTCCTGATTCGCTGCACATCTTCAATGCCATCAGCGGGACGCCCACTGCCGCCACTATCCAGGGCCTGCCAAACTCCTCTTCGGTGGTGTGAACCTGACCTTATGACCTTTCATGTCACACCTCTCCCAGACGTCACAAAGAGCGGAGGAGAGCCGAGGGAGCTTTCTCTATGTTTCTGCCTCATCCAGTGGATTTCAGCTACTGTTTCCTGTGGAGACTTTAttgaaaactgtattttattttggccATTTTGCCAGTTTTTTAATAGCTGTAGCACAGAGAGCAGAGAAGAGGGAGAATGGAGcccactgcatttatttgtgcgCTCGCATCCGAACTATGACTCTGACTGCAGAGGCTTTTACGTATTCTAAAACTCTGCAtcgtttattttgtattacttGTTCAGTTTTTGACTGGTTTGAAGCGTGCTTGGCGTCCGTGTGATGAGGTCAGCACTCTCACTGGAGGAGCGGCGGAGCTcgtgcagacacacacacgctaacgTTCAACATTACATTATCACttagcaaatatttttataccgTGGGACAGCTGAATgtgattgttgttgttttttttatctgtatttaaCAGTCTCTGCtctgctgtattttaactgaTATCGTCCCTAatgctttgaataaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100187 lncRNA downstream 233850 4636010 ~ 4636342 (-) True G67747
TU100185 lncRNA downstream 251324 4615858 ~ 4618868 (-) False pde11a
TU100165 lncRNA downstream 314442 4552424 ~ 4555750 (-) True G67730
TU100168 lncRNA downstream 318317 4551237 ~ 4551875 (-) True G67733
TU100138 lncRNA downstream 442546 4427288 ~ 4427646 (-) True G67712
TU100380 lncRNA upstream 23048 4944603 ~ 4954082 (-) True G67847
TU100466 lncRNA upstream 83739 5005294 ~ 5006781 (-) True G67904
TU100474 lncRNA upstream 105489 5027044 ~ 5027597 (-) True G67911
TU100476 lncRNA upstream 128874 5050429 ~ 5051292 (-) True G67913
TU100488 lncRNA upstream 167627 5089182 ~ 5089393 (-) True G67923
XM_043248520.1 mRNA downstream 959 4860892 ~ 4869233 (-) True slc15a1a
XM_043248522.1 mRNA downstream 10526 4852949 ~ 4859666 (-) False stk24a
XM_043248536.1 mRNA upstream 18430 4939985 ~ 4973955 (-) True LOC122351456
XM_043248828.1 mRNA upstream 56104 4977659 ~ 4985596 (-) True LOC122351620
XM_043248237.1 mRNA upstream 86630 5008185 ~ 5009514 (-) True tmem37
XM_043248550.1 mRNA upstream 89023 5010578 ~ 5014791 (-) False dbi
XM_043248546.1 mRNA upstream 95513 5017068 ~ 5022355 (-) True steap3
XR_006251761.1 other downstream 47230 4794951 ~ 4822962 (-) False LOC122351499
XR_006251762.1 other downstream 47230 4794953 ~ 4822962 (-) False LOC122351499
TU100077 other downstream 748353 4120548 ~ 4121839 (-) False G67668
TU99607 other downstream 1677252 3189847 ~ 3192940 (-) False G67358
TU100414 other upstream 38162 4959717 ~ 4983747 (-) True G67863
TU100469 other upstream 88958 5010513 ~ 5014735 (-) False dbi
TU100470 other upstream 88958 5010513 ~ 5014813 (-) True dbi
TU100475 other upstream 107371 5028926 ~ 5029475 (-) True G67912
TU100497 other upstream 184339 5105894 ~ 5108387 (-) True G67930

Expression Profile