RNA id: XM_043248860.1


Basic Information

Item Value
RNA id XM_043248860.1
length 3638
RNA type mRNA
GC content 0.38
exon number 12
gene id LOC122351640
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15966763 ~ 15973561 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAACCAATTTTACTAACAAATGGTAGCGGCGTTTTCACATGCACTAAAATTCTCTGTACATCGTGCAGTTTTAAAGGAAACGAAACCGAAACTTAGTCTACAGCAAAGCCCTCATTTCAGGATAAACTCGCAGCGGTGCAGTAGCTGGAACATTATTCAGAAATGTCTCCATCTGGTTCCTCAAAGAGGGGGAAAACAACCAGTGGTCTAAACCGACACTACGAAGAAAGGGTGCGACCATGCATTGACCTAGTGGACTCTCTCAGGTCCTTAGGTGTTGAAAAAGACCTGAACCTGCCAGCTATTGCTGTCATAGGTGACCAGAGCTCAGGGAAGAGTTCAGTGTTGGAAGCCCTGTCTGGAGTGGCCCTTCCTAGAGGAACAGGTATTGTAACACGATGTCCTCTAGTGTTGAAACTGATGAGGGTTTCAAAGGATGCAACTTGGCGAGGACTGTTGTCATATAAGGACCAAATAAAGAATCTAAAAGCCCCAGCAGATGTCGAGAATGCCGTCTTAAATGCTCAGATAGTTTTGGCTGGAACAGGTGAAGGGATCAGTCATGAGATGATCACTCTGGAGGTCCAGTCCAGTGATGTTCCTGACCTCACACTCATCGACCTGCCAGGCATTGCTAGAGTTGCCACTGGAAACCAGCCAAAAGACATAGAGAAACAAATAAAAGATCTCATTGAAAAGTTCATTAAAAGACAAGAGACCATCAGCTTGGTTGTGGTGCCTGCAAACATTGACATCGCTACCACTGAGGCTCTGCAGATGGCCTTCAGAGTTGATTCAACGGGACAAAGGACCCTGGGTATTCTGACTAAGCCAGACTTAGTGGACAAAGGCATGGAGGAGCTGGTGGTCAGAACGGTCAATAATGAAGTAATACAACTGAAGAAGGGTTACATGATTGTGAAGTGCCGAGGCCAGCAAGACATCAACGAGAAGCTCGATCTGATCAAAGCtctagaaaaagagagacatttTTTTGACAAACATTCTCATTTTAGGTCTCTTCTTGAGGATGGAAAAGCTACAATACCCCTTCTTGCAGAAAGACTCACAAAAGAGTTGGTTCAACACATTACTaaaacgCTGCCGCAGTTACAGAATCAACTGGAAGTGAAACTAGAGAAGACATCTGAGGAACTTAAATTACTGGGAGATGGTGTTCCTTTAGATGAAAATGAGAAGAGCAATTTTCTGATTACgAAAATTCGTCAGTTCAATGATGCAATTGATGGAGTAAAGAAGGCAGAGGAAGATCTAAAAAACACAGATGTGAGGGTCTTCACTAAAAGCAGGCAGAAATTTGGAAAATGGAAACAAATCCTAGATGACAAAACCATTAAGACGGAGGAAACTCTCAGAGATGAAGTAACAGAGTATGTTAAGAATCGTAGAGGAAAGGAACTTCCTGGATTTGTGAGCTATAAAACATTCGAGAATATTGTCAAGAAATACATTGAGGAGCTTGAGGAGCCTGCTGTAAAGCTCCTAAAAGACATCACTGACATCATTCACACCTGTGTGGACCACACCGTTAATTCTCATTTCAATGCCTTCTCTAACCTGTTGAGGGCTGCAAAAGATCCAATTGAAGATTTTCTTGAAGAGCAGTTTCAGAAATCTGAAGAAAAAATCCGTTCTCAATTCAAAATGGAGAAGATTGTTTACTCTCAAGATGTTCTCTACAGTCACCAGCTGGatgatgtaaaacaaaaaatctttcCACCAAAGGTTTGGCCATCATATTCAAGTGTTAGTGCAGATGTACGTGAGATGGGACAGCATCTCACTGCGTATTTCAAGaTTACCTGTGACCGTCTGGCTAACCAAATTCCACTGATAATCCAGTACCACATGCTGGACCAGTACCTTTCTCAGCTTCAGAATGCAATGCTCGCCATAATTGGGAGGAACAATCCAAGAGTCCTGCTCCAAGAAGATTCTGGTGTTGCACGTAAAAGGAAAGAACTAAAAGAGCGATTGGAGCGCCTGAGGAACGCAGGCAAAGTCCTGTCCAAATTTGTGCATTCTGCATAATTGTGCTCTGTTGCTGTTCCAGCCCGAGAAGCCTCCgagtcaatttgctcaaaaTTGTAAGGAATGTCAGAGTGCGTGGAAACTCCTCATTTATAGTTTATCTGTTAacatgaaaaacttttttttcaatagcCTACCGCCTACCTGTTACTGGTCTTTTTTTAGATAACAAAAATAGTAAAGCAACCTGAAATGGAATTGTCTTATCATGGTGAAAGATGATGAGCCATTGTCCTTTCAACAGCAAATAcgaaaattaaagaaattaactaATTGTGTATTTCAAATACTATTCTAATTACTTGGtaaggttttgttttatgttgatCATTTCTAATTTGATTCTCCAATAATCTTACCAAGgctttcattttacattttttttacatttctattacaGAATTACAGAATTTCAGTTaatataatgtgatttattatatCTATAACCTGCAttatcaaataaatcatttacactgaaaaatacaACTGCATTGTCATTTCAGGCAGGTCTTTCTTATAAGAATTGTAACCCAAACTATTGCatgtttgtgaaagaaaaactataaaactatagTGTTTTAGGcaaaatgtttgtgaaatatattgTAGAGGAGGTCACAACATTGAtctcattttataatttagctgcttttatgcctttttggaatgttgttgctgttgtattcaaacatattttatatatatatatgtgtatattttccATTACCCACTTGTCAAATTCATCCATTGCCTTCAGCTTCTTGCAGAAAGACTCACAGAAGAATTGGTTCAGCACATTACTGTATGTGGGCTGATCCGAGTTGCTTGGTTATGGTTTTTAGTGTTCTGgttttgattttgaatatttttgaatatttatgtacacactatatgtatgtttaaataaatactgaatttCTTTCTAAAAAGATTGAATCAgtccaaacaaaaaacaaatgaaatgtataatggTGTGTTTTACCTTTTATGATTGAAtgctctgttttatttatagacATTGTTCATTGCTGTGTAAAACGCAATGTTGGCTTTCATTTCAAGGCCTTCTCTCACCTGTTGAGGGCTGCTGTTGGTCTGCATCTGTCTATGCAGTTTTAATTGGATGcaatttgtatgcatttgtagATTACCTCTGTCCGACTGGCTAACCAAATTCCATTGATAGTTCAGTACCAAATGCTGGACCAGTGCATCTCTCAGCTTCAGAATGCTATGCTGGCCATAACTGGAAGGAACGATCCAGGAATACCGCTCCAAGAAGATTGAGCTGTTGCGcttaaaaagaaagaactgaAAGAAAGACTGGGACGTCTGAGGAGCGCAGGAAAGGTCCTGTCCCAAGTTTGTGCATTCTGCATAAGCGTTGAGATTATGATGTTGGTTTGTGTATGTTGCTTAGCTCAGAATTGCAACAGGGTGTCAaattttggccggtttaagaaGAAGTTAAGCCAGTTTTTGTGTAAATTTCAAATGAACTGTAATGTCCTggaaactgcaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0009615 response to virus biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14754 MX; interferon-induced GTP-binding protein Mx

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251840.1 lncRNA downstream 12787 15948113 ~ 15953976 (-) True LOC122352066
TU104518 lncRNA downstream 204094 15762383 ~ 15762669 (-) True G70660
TU104479 lncRNA downstream 322487 15642259 ~ 15644276 (-) True G70633
XR_006251775.1 lncRNA downstream 328327 15628883 ~ 15638436 (-) True LOC122351574
TU104406 lncRNA downstream 545186 15418999 ~ 15421577 (-) True G70581
TU104861 lncRNA upstream 144721 16118282 ~ 16120319 (-) True G70894
XR_006251709.1 lncRNA upstream 631806 16605367 ~ 16631420 (-) False LOC122351188
XR_006251710.1 lncRNA upstream 631806 16605367 ~ 16617024 (-) True LOC122351188
TU104934 lncRNA upstream 636709 16610270 ~ 16610561 (-) True G70955
TU104935 lncRNA upstream 639556 16613117 ~ 16613424 (-) True G70956
XM_043248861.1 mRNA downstream 296 15963794 ~ 15966467 (-) True gatd3
XM_043248302.1 mRNA downstream 23673 15940890 ~ 15943090 (-) True olig2
XM_043249362.1 mRNA downstream 34227 15930621 ~ 15932536 (-) True olig1
XM_043248041.1 mRNA downstream 53193 15909284 ~ 15913570 (-) True ercc1
XM_043248042.1 mRNA downstream 59196 15906028 ~ 15907567 (-) True LOC122351156
XM_043249419.1 mRNA upstream 1004 15974565 ~ 15978301 (-) True hpxa
XM_043248590.1 mRNA upstream 24580 15998141 ~ 16006044 (-) True LOC122351503
XM_043248589.1 mRNA upstream 32619 16006180 ~ 16024933 (-) True fhip1b
XM_043248160.1 mRNA upstream 119169 16092730 ~ 16097066 (-) True casq2
XM_043248162.1 mRNA upstream 119169 16092730 ~ 16097060 (-) False casq2
TU104521 other downstream 194899 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 567326 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 660788 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 1712987 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 2026895 13938259 ~ 13939868 (-) True G70294
TU104983 other upstream 843579 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 843579 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 1262311 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 2596194 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 3746937 19720498 ~ 19721737 (-) False ankar

Expression Profile