RNA id: XM_043248878.1


Basic Information

Item Value
RNA id XM_043248878.1
length 1529
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC122351655
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1067017 ~ 1079247 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCATTTCCGCGCGATGGATGCTGTACTTCCTGTGTTGTGGGACTCGAGCAGAAGCGAAAGAAGACTGGGAGATCTTCGGCGTCCTGAGAACGTCCGTGTGGACTCACTCAACACCCGTTATGTTCTGCGCTGGGACTGGCCTCACGAGACCGCCGCCAACCAGAGCGTCAGCTTCACTGCGCAGTATCTATCGGAGTTTCGGATGCGGAAGGCCAGTAGTGAGAAGTACTGGAAGTCGGagtgtgaaaatgttttggagCTTCGCTGTGACTTCACTGGAGCTGAGCTGCATTATAACGGCTTGTATCTGTTGCGTGTGCGGGCAAACACATCACAACAGTCCTCTGACTGGGTCTGGATCAGATTCTGTCCAGATAAACAAGCTGCTTTAGGTCCTCCCTCCAATGTAAAGCTAAACTCTATTGAAGGAGATCTGGAGATCATCATCACTGATCCTCTGAGCAGCACTAACCAGTCCATGAAAACTTTCCTGGACAGGCTGAGCTACCTCGTCCAGTACTGGAGGCGCTCTGAAGAGCCTCAGAAGGCTAAAGATCTGGAGACAAAGAACAATCTGGTGATGCTGACTGACCTGCACAGACAGACGTTGTACTGTGTGAGAGTTCAGAGCCGTGATGACTTCTATAACAAGAGCAGCATCTTCAGCGACACACACTGCATACGCACTGAAGGTCAGTTGCCATACTGGCAGATATTTCTGTACTTCCTGATCTCTCTTCTGCTGTGCTTCCTGCTGGTGCTGCTGCTATTCTTCTGCTTTTACAAGATGTTTACGGTCTTCAAGAGTACCTTTCGCCCAGCCATTCAACTCCCAGATCACATTCAGGAGCTGTGGTTAAGTGACTCCGAGAAGCCGCAGCTGCTGGCTCCTGAGTCTccagagtctgtgtgtgagccGCTGGTCGTGGTCAGTGCTGATCTGGACGCTGTGGCGGTGGATGAACACTTGAACGCTGAGGAACAGGACTCCAGCACACACAGCCGACACGGCAGCGGAGACTCGGGCGTTTACTCCACAGAGGAGGACTCCTGTCAcagatccacacacacagacctacAGACGAGCAGCAGAAAGCACAGAGAAGAGATGCATGATGGGAACCGGCTGGAGATCTGCGCTTGAAACGCTCCACAGACGTTGCAGCTTTGACTTTCTCTCTTCCTACATCTGTCTGCTTATTGTACACGTGGAGAGGTTTATGACATTTGACTCATATTTCTCATATCTGTATGTTGCCGTGCAGATCTCTTATGATTCTTATAGAATCCTAATTCATTTCTGTCACTAGATGACTTTTTGTTAGCTTCAACAATAGCAGCATTTATTGATTGTTTCATCATTCTTCATCTCTCAGTATCTTAttgaaaacatcacattttaataatccagTGCTTGCTTGCTTGTAATGAAAAGACGGATGTCTTTATGGTATTTTTTGTCAACTCAGTTATGGATAAATTGGGCAATGtgcagaaataacaataaatcataaagaaataaaaaca

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0002757 immune response-activating signal transduction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004904 interferon receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98807 lncRNA upstream 50718 991461 ~ 1016307 (+) True G66767
TU98772 lncRNA upstream 63461 984459 ~ 1003564 (+) True G66744
TU98800 lncRNA upstream 94517 972179 ~ 972508 (+) True G66765
TU98797 lncRNA upstream 98884 967610 ~ 968141 (+) True G66763
TU98965 lncRNA downstream 149985 1229232 ~ 1229442 (+) True G66891
XR_006251784.1 lncRNA downstream 180332 1259579 ~ 1262590 (+) False LOC122351665
TU98987 lncRNA downstream 180370 1259617 ~ 1275722 (+) True LOC122351665
TU98988 lncRNA downstream 180370 1259617 ~ 1279178 (+) False LOC122351665
TU99030 lncRNA downstream 446616 1525863 ~ 1527400 (+) True G66931
XM_043248879.1 mRNA upstream 9009 1048414 ~ 1058016 (+) True LOC122351656
XM_043248871.1 mRNA upstream 133687 910031 ~ 933338 (+) True LOC122351648
XM_043248885.1 mRNA upstream 159104 899630 ~ 907921 (+) True LOC122351660
XM_043248872.1 mRNA upstream 167646 859776 ~ 899379 (+) True LOC122351650
XM_043248517.1 mRNA upstream 244647 805144 ~ 822378 (+) True LOC122351437
XM_043248881.1 mRNA downstream 151926 1231173 ~ 1239023 (+) False LOC122351657
XM_043248880.1 mRNA downstream 151927 1231174 ~ 1239023 (+) True LOC122351657
XM_043248887.1 mRNA downstream 220309 1299556 ~ 1315895 (+) True LOC122351663
XM_043248412.1 mRNA downstream 580763 1660010 ~ 1688469 (+) True LOC122351375
XM_043248940.1 mRNA downstream 634565 1713812 ~ 1727530 (+) False bpifcl
TU98782 other upstream 206869 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 262016 797133 ~ 805009 (+) True G66727
TU98627 other upstream 604996 459574 ~ 462029 (+) True G66657
TU98836 other downstream 48279 1127526 ~ 1134989 (+) True G66795
XR_006251792.1 other downstream 634566 1713813 ~ 1729395 (+) False bpifcl
TU99551 other downstream 2115548 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 2834391 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 2868789 3948036 ~ 3951311 (+) True G67566

Expression Profile