RNA id: XM_043248881.1


Basic Information

Item Value
RNA id XM_043248881.1
length 1321
RNA type mRNA
GC content 0.39
exon number 7
gene id LOC122351657
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1231173 ~ 1239023 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACATCTGCGTGTGTTTTAGGTTCCCTTTCGCTTTTCCTCTAAGCATACTGACACACAAGGAAACAAACGACGTATGCCGTACGTCGTTTGCTATTAAAGCAAAAACTTTCAGTAAGATCATACTGTCTGTAAACTTTATACAGCTAATcataatttgaaaacaaaagaatgatgAGCACTTTATCCCGTCTGTCTGTGGTCTTACTGCTTTATATCGTCACAGCAGAAAAGGTTCCAACCCCCGAGAATGTGAGAGTGATATCTTTGGACATGGGATTCGTTTTAGAATGGGATCCACCACAAAGCACCAAGAATAAACTCTTCAACTACACTGCTGAAATTAGtGGATGGAATAACATATATGAGCCAGTGTGTCTAAGCAGCTCATCACTAAGCTGTGATTTCACTgacaacatttctatttttggaaCCTACCAACTTCGTGTTCAGGCTGAGCTTCATGGAGAAACATCTGATTGGGTGGAAACTAAACATTTATCGGTGGATCAAATAACTAAAATTAGCGCTCCTCGTGTACAACTGAGAAGCAGAAAAGGACAAACAGAAATTGATATCACTGATcctcttctaaaaaaaaagaacttgagGGAAGTCTTTGATAATATTTCCTACCTCATCCGTTTCTGGAAAAATGGAGAGACTAAAAAGGAAGAACTAATAAGAGAACAAAACAGAGTTATGTTACCAAGACTGGAGCCACTTGTAAAGTACTGCTTTGAAGTAGAGATTCTGTATTCAAACAATACAAGTCAGACCAGCAACGTCACATGTTTAACCAACACCCAAAGCAATGAAGTTGAACCGTGGCTTATAGCAGTTGTGCTCCTGGTCAGTTTTCTGGTGGTGTTAGTTGCTGTTGTCCTGATCTTTCTGGTTGTGTGGTTTGGCTATAGAGGATGCAGAATAATCTTCCCTGATGCTGAACTGCCAGAGGACCTAAAAAGGTTTTTGTCACAACGTTCCAAGTCTTCGATACTTTCAACCATTCAGGAGAGCACGGTGAAGGAGTACTTTTGTGAGCTGAGGATATTGCACAAGGAGCCAAACAGTTGTCTGGACAGTCAGCAGATAGAAGGACCAATAAGGATTCAGACACATAAGAACGAGTGTTGCATAGGAGCCAACATAAAACAGAGCAGTGAGGAGAAATCTGAAAAGATTATGACAACAGAACAGAGCCTTTGCTTGCTAAAATGAGACTGTAGTAGTACTGTTCTTATAATCAATGattattgatcatttatttttagctattcTGTGAAAAaggcaaaagaaataaaatattataaaataaaatga

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98965 lncRNA upstream 1731 1229232 ~ 1229442 (+) True G66891
TU98807 lncRNA upstream 214866 991461 ~ 1016307 (+) True G66767
TU98772 lncRNA upstream 227609 984459 ~ 1003564 (+) True G66744
TU98800 lncRNA upstream 258665 972179 ~ 972508 (+) True G66765
TU98797 lncRNA upstream 263032 967610 ~ 968141 (+) True G66763
XR_006251784.1 lncRNA downstream 20556 1259579 ~ 1262590 (+) False LOC122351665
TU98987 lncRNA downstream 20594 1259617 ~ 1275722 (+) True LOC122351665
TU98988 lncRNA downstream 20594 1259617 ~ 1279178 (+) False LOC122351665
TU99030 lncRNA downstream 286840 1525863 ~ 1527400 (+) True G66931
TU99052 lncRNA downstream 346912 1585935 ~ 1594452 (+) True G66952
XM_043248877.1 mRNA upstream 151926 1067017 ~ 1079247 (+) True LOC122351655
XM_043248878.1 mRNA upstream 151926 1067025 ~ 1079247 (+) False LOC122351655
XM_043248879.1 mRNA upstream 173157 1048414 ~ 1058016 (+) True LOC122351656
XM_043248871.1 mRNA upstream 297835 910031 ~ 933338 (+) True LOC122351648
XM_043248885.1 mRNA upstream 323252 899630 ~ 907921 (+) True LOC122351660
XM_043248887.1 mRNA downstream 60533 1299556 ~ 1315895 (+) True LOC122351663
XM_043248412.1 mRNA downstream 420987 1660010 ~ 1688469 (+) True LOC122351375
XM_043248940.1 mRNA downstream 474789 1713812 ~ 1727530 (+) False bpifcl
XM_043248938.1 mRNA downstream 474790 1713813 ~ 1736320 (+) False bpifcl
XM_043248941.1 mRNA downstream 474790 1713813 ~ 1736320 (+) False bpifcl
TU98836 other upstream 96184 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 371017 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 426164 797133 ~ 805009 (+) True G66727
TU98627 other upstream 769144 459574 ~ 462029 (+) True G66657
XR_006251792.1 other downstream 474790 1713813 ~ 1729395 (+) False bpifcl
TU99551 other downstream 1955772 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 2674615 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 2709013 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 2742504 3981527 ~ 3983582 (+) False G67566

Expression Profile