RNA id: XM_043248887.1


Basic Information

Item Value
RNA id XM_043248887.1
length 2385
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC122351663
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1299556 ~ 1315895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AaatctgagaaaaataaatcacaggaTGTCTCTGGGAGAACAGATGAGAAACAACTGATTGATCAAAATCACGCAAGCATtgcaaaatgtatgtaatacCAAGGATACTAACAACCATTGCTTTGTTTCACACGGGATTGTGCATGGAAATACCTGCTCCTGTACATCTGGTCCTGTCTTCACAATATTTTGTCCACTTGTTGTCCTGGAAAATGGGGCCAGGCTCTCCTGACGGTGTCCACTATACAGTCGGCGTGCATGCGCTCAAGTATTGGGGAGACTTGGTGGTGAAGGAGTGTGAAAAGGTAACATTCCCTCTGCAATGCAATCTCACAGAAGCATTTTCTGATATGGAGGACACCTATTACGTCCACGTGACTGCTGCTCTGGGCAACCTCACCTCGACACCTTCTTTCTGCAACCCATTCAAACCCATTTATAATACCACCTATGAACCTCCGCTGCTGACAGTAACTGCGTGTAATCAGTCTCTCTGTATATATCTCAGAGCACCTGCTGAGAACCTCCACCACGTCTACAATTCATTCAAGTCTTACTATAGATTGACAGTCAGCAGTGAAGATAGAGCAGAGTTTTACGTGGATACTGAAGGGTTAAATAATGTGACCCTCAAGGACCTGGCCCCTGGCCGAAGGTACTGTGTGAATGTCAGCATCACTGATCACAGCCCACCCAAcagaccagcagtatgtgcCTCCGCTCCCGAAAGATCAAATGTTTCAGatGTCATTATCTCTGTTATCCTGTGTCTGCTGATGGTGCTGTTAGTGATGTGCACACCAAGATATGTTTATTGCCGTTTCTGTGTAAAAAGAGATCTTCCTCCAGCTCTGAGTTCATTTCAGAGTACAGATAAAGTTATTCTCGTCACTGCTGATGAATCTATTAATGAGGTCCATGAGGAGAGCAGCGCCattgaaaagataaaaacaaacaaagaggaaaataaCCTGAAGGAAGAGACAGAGGAGGTTTTGAAACATGAGACACTAATGGCACACTATCTGAACACTCGAGGTTCCCTGCTCTGTTTTCCAACGTCATTTAGCTCTGTTTTGCTTATTAATCAAACTCCAGATACAAGCCTCGCACCTTCCACAGATGCTCAGAGTGGTAGTCTGATTGTGTTTGAAGGCAGTCAAATCCATACTGAACAAACAGCTTCGGCTAGGTTCCCTAAAGGAGTCAGCGCACTTCAgaatttcagttctgttttcACACACATGGGCGATGAAGACCAAGAGAGCAGTACAGATGTTAACCTGTTTTCTGTGATGTTAGGCGGAGTTTCTGATAAAAACTGCAACACTGAGGATGTGCAGGTATCATGTCCTCAGCATCTGTTACAGACTTGTGCTACATCTACCTGGATTTGTGATTCACAGTCCCAAAACCCTCAAAAGTCCGTTCAAATTAACGTTTCAGAGGAAGAAGATGATGACGATTCAGGGTACTTAAGTCGAAATTAGATTCCTCAAGAAattgttgggtctggatgcccctttaCAGTTCTTTACCGCCGAAGTCActcttgttaaaataaagacacgACAATTTGTTCAATTTAAGAGCTTGCAAGTGGCGTCTTCAGTTGCAAGCGGGAGCAAAACGGTCCAGTCTGCCTTGGTTTGCATCTGAAAGCCCCACCAGAAAACCtcctttttattgtgaaaagatAAGAAAACACACCATGTTACAAAGTGGAGCAAGGTTGAGTTCTGAGATTAAGACTGTCTTCCCAAAACTTGCGAGAAAGCGGCCTTGGTACGCGATAAGCAGGAACTGAGTCCAAGATATGAGAGAACAAGCAATCCTTgaagatatgcacacacatcTGCTCTGGAAATTTCCATCATGCAGTCACTTAATGTCAACATTAAGTTAtagaaaatcatgtttcatCTAACAGAAATGAACAGTCTTTTACATCAGTTGAGACTGAGAATAGATATGGCAATCTTAAAGCACACACAAAGCATTCTGagatgtatacttttttttgtattttaagtgttattattattgtcttttcaATATGCATTTCAGTCTGATGGAGATCATGGCATACCAATATGTATTACTCTTATTTGTCTGGATAAGGAACAAGTGTTTATTGGCAGACACCATGGGCCAGGCAGGATTGGGTAGTGGAGAAGGGTGCAATtgcaaaactatttttcatCTAATGAATATTGAGAATAGTGAGTTACTTACtataaagaatataaatgtatataaatgtgctGAAATTTAATTTCCTAATAGTAAGAAATAAACCAGGGAGGTTTCTATTTCTAGTATTACTGTtacattctaatttaattttgcaaTGGGTCtctttattaaagcattaaGTACACAGTT

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0004904 interferon receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98988 lncRNA upstream 20378 1259617 ~ 1279178 (+) False LOC122351665
TU98987 lncRNA upstream 23834 1259617 ~ 1275722 (+) True LOC122351665
XR_006251784.1 lncRNA upstream 36966 1259579 ~ 1262590 (+) False LOC122351665
TU98965 lncRNA upstream 70114 1229232 ~ 1229442 (+) True G66891
TU98807 lncRNA upstream 283249 991461 ~ 1016307 (+) True G66767
TU99030 lncRNA downstream 209968 1525863 ~ 1527400 (+) True G66931
TU99052 lncRNA downstream 270040 1585935 ~ 1594452 (+) True G66952
XR_006251746.1 lncRNA downstream 355476 1671371 ~ 1674598 (+) True LOC122351376
TU99157 lncRNA downstream 372760 1688655 ~ 1692476 (+) False G67023
TU99158 lncRNA downstream 372760 1688655 ~ 1692476 (+) True G67023
XM_043248881.1 mRNA upstream 60533 1231173 ~ 1239023 (+) False LOC122351657
XM_043248880.1 mRNA upstream 60533 1231174 ~ 1239023 (+) True LOC122351657
XM_043248877.1 mRNA upstream 220309 1067017 ~ 1079247 (+) True LOC122351655
XM_043248878.1 mRNA upstream 220309 1067025 ~ 1079247 (+) False LOC122351655
XM_043248879.1 mRNA upstream 241540 1048414 ~ 1058016 (+) True LOC122351656
XM_043248412.1 mRNA downstream 344115 1660010 ~ 1688469 (+) True LOC122351375
XM_043248940.1 mRNA downstream 397917 1713812 ~ 1727530 (+) False bpifcl
XM_043248938.1 mRNA downstream 397918 1713813 ~ 1736320 (+) False bpifcl
XM_043248941.1 mRNA downstream 397918 1713813 ~ 1736320 (+) False bpifcl
XM_043248939.1 mRNA downstream 397933 1713828 ~ 1736320 (+) True bpifcl
TU98836 other upstream 164567 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 439400 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 494547 797133 ~ 805009 (+) True G66727
TU98627 other upstream 837527 459574 ~ 462029 (+) True G66657
XR_006251792.1 other downstream 397918 1713813 ~ 1729395 (+) False bpifcl
TU99551 other downstream 1878900 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 2597743 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 2632141 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 2665632 3981527 ~ 3983582 (+) False G67566

Expression Profile