RNA id: XM_043248889.1


Basic Information

Item Value
RNA id XM_043248889.1
length 1883
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC122351673
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13513602 ~ 13515484 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACATAAAGGTTTGCACGGTTAATTAAGCATTTTGATACAGGAGCCCGGCTGCATCATCCATATGCAAAACTGAACGATGATTAACGATGATGGAAATTGTCTTAAGGTTTTAGTGATGAGCATTGTCATTTCCAAGGTATtacattttctgcaaaaaaaaaaataaataaataaatgaattgcttACTTGTGCACAACTCACCACTATGCTGCAGTATTGTGGGTGGCTTGCCTTCCAGTATGTGGTTTATGGCTCGGGTGCTTTTTTCAATAAagtctgtttttgttattgtcCACCAAGCAGAAATCTATACTGACCTAGTGTTTCTTATTTAGAGACTTGTTCAAGTCCCCTTTGTCTagtgatggatttgttttgctattacaaacgcagcttttcacttcacaagaacTGGAGTCgcgtggattacttgtggattattgtcatGCTTTTATCAGTGTTTCggactgacggcacccattcagcaTCCgctgctgagcaagtgatgtaatgcaaatgtattcTGATGTAGAAACAACTCACGTTACTTTTTCAGCAAATTTCTATGTTAGGGTGAACTTTTGCTTTAAGAACGGAGCCCTtaaaaaagtccaaacatctaaaattgaaaagtttgcggtcaataaaataaagctggCTATAAGtagtttaataatattgttCAAGTAATGTTCACAGTTGCACTGATTATGTAACACTTGACGATGAGCCTGGGGATGGTTCTGTTTTAATCCATGTAAGAATTTGTGTCATTTGTTTATGGTTGGCCGTCAAGCCACATTTAATTTACCAACCTATTTTACTTTGACcttatatcatttatttgttgtaataaaAGCGTGGGTGTATCAGGAAGGGCAGGACATTTTCAGGACCATCAGCAACTGATTTGAGGCGACAGTGAAGATGGAGCCATGGCTATATGCTTTGCTCTCCAGTCCCCTTTGCCTCACGGCAACCTTTTTCAACATCATCTTCTCTTTTTGCCTAATGAGACCAGTCGCCGGAGTGACGCTTCGCAATCCACTGTGCTTCTTGTTAATTGTGGTGCTATTCAATTCAACGTTTCAACAACTGGTGACTGTGATGACCATAGTTATGCTGCTTTTTGATGCACCGTTCTGGCTTCAAACGCTAACCAGAGCTTTGATTTATCAGTTTTTCTGCGCCAACTTCTCCTGCAATGCCTGGATCAGCATTTTCTACTACATTTCAATTGTTCCTCAACAACATCCAGTCTTCATGTGGATTAAGAGGAATATTAATGCCATAATATATATCGGCTTCGCTCTGAATCAAATCGTGCTTGTGATTTCTTTGTCTTTGGGAGCAGTGATGTATTTTTTGCTCGAGCCTGTCCCAAACAATTCCACTTCAcccaaactaaacaaaacatcaacattCGAAAACTCAGACTCAGTCCTGTATTTGTTTCACGTGTCcaattttacatatttgctATATTGCACCTGCCCGCtgtttacattattattctCTTGGGGAAAAACCTTTGTTTATCTACGTGAACATATGAAAAAGATGGGACAGAGTGGCGAATCTTTTTCCCAGCCTCAGCAGAAGAGCCAGATGAGGGTGACAGTAACTGGCATGGTACAGGCAGCCCTTTTTCTGCCCAGCAGCCTATGGACTATAGCAGCTGCTTCCCTCTACATAACAGACCTCTTTGAAAAGGTTGATCCCAGTAGATTTGTCACAATGACATTCTGCTCAATGTCCAGTTTGGGAaatttactgtgttttggatTCTCCCAGTCTGTGTTTCGCCATGGAATTGTAAGTGTCATTAAGAAACTAAAGAGACACAAATGAGATCTTAGGATTCTCCCCACTTACACGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103525 lncRNA downstream 17957 13473140 ~ 13495645 (-) False gypc
TU103479 lncRNA downstream 101163 13411812 ~ 13412439 (-) True G69953
TU103390 lncRNA downstream 186189 13302403 ~ 13327413 (-) True G69888
TU103400 lncRNA downstream 187933 13310873 ~ 13325669 (-) True G69896
XR_006251825.1 lncRNA downstream 281392 13228154 ~ 13232210 (-) True LOC122351987
TU103573 lncRNA upstream 154319 13669803 ~ 13673807 (-) False tmem163a
TU103577 lncRNA upstream 159234 13674718 ~ 13675514 (-) True G70027
TU103589 lncRNA upstream 163896 13679380 ~ 13682139 (-) True G70033
TU103926 lncRNA upstream 300227 13815711 ~ 13816743 (-) True G70263
TU103938 lncRNA upstream 319762 13835246 ~ 13835699 (-) True G70271
XM_043248890.1 mRNA downstream 17935 13473135 ~ 13495667 (-) True gypc
XM_043248171.1 mRNA downstream 58752 13449870 ~ 13454850 (-) False faima
XM_043248170.1 mRNA downstream 58904 13449870 ~ 13454698 (-) True faima
XM_043248838.1 mRNA downstream 69430 13433965 ~ 13444172 (-) True parp14rs1
XM_043248842.1 mRNA downstream 88757 13420015 ~ 13424845 (-) True dhrs12
XM_043248888.1 mRNA upstream 204 13515688 ~ 13574954 (-) True cntnap5a
XM_043249058.1 mRNA upstream 126819 13642303 ~ 13671482 (-) True tmem163a
XM_043248515.1 mRNA upstream 169501 13684985 ~ 13694187 (-) True LOC122351432
XM_043249524.1 mRNA upstream 244840 13760324 ~ 13765326 (-) True mmadhcb
XM_043248469.1 mRNA upstream 262142 13777626 ~ 13783452 (-) True si:dkey-91i10.3
TU103524 other downstream 17957 13473140 ~ 13495645 (-) False gypc
TU103526 other downstream 17957 13473140 ~ 13495645 (-) False gypc
TU103179 other downstream 527624 12985124 ~ 12985978 (-) True G69757
XR_006251867.1 other downstream 775431 12738044 ~ 12738171 (-) True LOC122352189
TU103144 other downstream 801778 12708631 ~ 12711824 (-) False LOC122351186
TU103924 other upstream 292338 13807822 ~ 13813327 (-) True G70261
TU103993 other upstream 422775 13938259 ~ 13939868 (-) True G70294
TU104031 other upstream 680995 14196479 ~ 14253776 (-) True G70317
TU104362 other upstream 1787619 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 1874365 15389849 ~ 15399437 (-) False tmtc4

Expression Profile