RNA id: XM_043248915.1


Basic Information

Item Value
RNA id XM_043248915.1
length 5267
RNA type mRNA
GC content 0.45
exon number 28
gene id ptpn4a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10689848 ~ 10728088 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCCATGTTACAATGTAACACTCAGCACTGCCGCTGCTTCTGCGGCTCCTGCAATGTAACAGCACCGCGAACGGAGACGCAGCTCGAGACGCGACCGACCCCGACGAGCCGACCTCCAGAGCGGGAAATGCGTTTTTGGTTTGCCGCGAGACCCCTTCTGCCGCCCCAGTGGTCCCGCTGAGAGGATCGCGAAGCGTCCCCGCTGTCTGGCTCCGCAGATTCGAGTTCGTGTGGATTACTGGAACCGGAGGCCCCGTTGAGTTGAACGTGTTGGGCTGGAGTGGGTCAGTATGAGGCTGCCGCTGCTCTGAGCGGGCTCTCCGCTCCCCGCCTCGGGTCTcttactaaataaaattcacTTATAAAACTGGACACCCCTGGAGCAGTTTATGACGactCTGGTTGGACCGTAATGACCGCACGCTTCCGGTTGCCTGCAGGCAGATCCTACAATGTCCGGGCGACGGAGCTGGCACGCGACAGGCAGCGCACCGAGGTGGTCTGCAACGTTCTTCTTTTGGACAACACTGTCCAGCCTTTTAAAGTCAATAAGCACGATCAAGGACAGATCCTTCTGGATGCTGTCTTCAAGCACCTGGAGCTGACCGAGAGAGACTATTTTGGGTTGCACCTGGCCGACGAATCCTCTGATAGCCCGAGGTGGCTGGATCCAAATAAACCCATAAGGAAGCAATTAAAAAGGGGCTCTCCACATCATCTGAACTTCCGGGTGAAATTTTTTGTGAGCGACCCCAACAAACTTCAGGAAGAATACACACGGTACCAGTATTTTCTACAGATTAAGCAGGACACGCTCAGTGGAAGACTGCCCTGTCCGCACAATACTGCCGCGCTCCTGGCTTCGTACGCTGTTCAGTCTGAGCTGGGTGATTACAGCGAAGCTGAGAATTTGCCAGGATACCTGTCTGAGTTCTGTTTCATCCCCAACCAGCCTCAGGGCTTTGAAAAAGAGGTCACCAAACATCACCAGCAACACAGTGGACTTACTCCAGCACAGTCTGAATTCAATTACCTGAACACGGCACGAACGTTGGAGCTTTATGGAGTGGAACTGCACTATGCAAGGGATCAAAGCAACACAGAGATTTTCATAGGCGTGATATCAACTGGCATTGCCATCTACAAGAACAGGGTACGAATCAACTACTTTCCATGGTTGAAGAttgtaaaaatatcttttaaatgcaAGCAGTTTTTCATCCAGCTGAGAAAAGAGGCGCACGAGACAAGAGATACATTGCTCGGGTTCAACATGGTAAACTACAGGGCCTGTAAGAACCTCTGGAAGGCCTGTGTTGAACACCACACCTTCTTTCGGCTCGATCGGCCCGTTCCGCCACAGAAGAACTTCTTTGCGCACTATTTCAGTTTGGGCTCCAAGTTCAGATACTGCGGGAGGACGGAAGCACAATCTGTTCAGTATGGCAAGGAGAAGGGAATCAAGGACAGAGTGTTTGCAAGATCTCCCAGCAAGCCCCTGGGCAGAAAGTTGATGGGTGTGACAGACTGGGAATCAGTGAGCAGGAACTCACTGTCTGAAGAGAGGCTGGAGACCCGTAGCCTGCCCACCCGCTCGCCCCCCGGGACGCCCAACCAGAACTCCTTATTTGTGCAAGAGGGTCCTCGGCTAAGACCTTCTTCCATGGGTCACCTGGTGGACCATGTCATCCATGCCTCCCCCAGCCTTCCTGTTTTCTCCAATCACAAATCAGCTTCCTCTACACAAGCTAATAGCATCAGCCTGGAGTCTACCCCGTCTCCAGAAGGAGTTGAAGGTCTGCCCCCTGCCCTCCCACCCAAACAGTCCCGGAAGAACCTCAGCCAGCTTATACTGTCCCACTCTCAACAGGACTTGGACAACCACATCAGTGAAATGTACAATGTCCCTATAGCAACCGAAAAGGCTACGCCCAATGGAATCATTCCTCACGACAATCTTGTCCTGATCAAGATGAAACCAGATGAGAACGGAAGATTTGGGTTTAACGTGAAGGGTGGCTCTGATCAGAAGATGCCCATCATCGTGTCTCGAGTAGCGCCTGGAACATCGGCTGATTTGTGTGTGCCTCGACTGAATGAGGGCGATCAGGTTGTGCTGATCAATGGTCGAGATATTGCAGAGCACACGCATGATCAGGTGGTCATGTTCATCAAGGCCAGCTGTGAGAGCCACTCGGGGGAGCTCATCCTGTTGGTGCGGCCCAATGCTATCTACGATGTGGTTGAGGAGAAATTGGAGACAGAACCGGATTTTCAATATATCCCGGAGAAATCTCCTACAGACCCATCGCAGCTGGACCAGGACGCCTGGAGGGACTCAATGCTGCAGTTAAAGGAGGGTCTTAACAGTGCTACCGTACTGGCCCAGTTTGATcaactgTATCGAAAAAGGCCTGGAATGACAATGTCATGTGCCAAATTACCTCAGAATCTTTCCAAAAACCGCTACAGAGACATCTCACCTTatgaTGCAACTCGAGTGATCTTGAAAGGTACAGATGACTACATCAATGCAAATTACATCAATATGGAAATCCCTGCCTCCAGTCTCATAAACCGCTATATCGCCTGCCAGGGGCCGCTGCCCAATACGTGCCCAGATTTCTGGCAGATGACGTGGGAGCAGGGCTCCTCTTTGGTAGTCATGCTTACTACTCAGGTTGAGCGAGGACGTGTGAAGTGCCATCAGTATTGGCCGAACCCCTCAGGTAGCGCCACATATGGCGGCTTTCAGGTTTCCTGCCAGACTGAGGAAGGAAACACTGCTTTCTTGGTTAGGGATATGACTCTTACTCACATTGAGAGTGGAGAAAGCAGGGAATTGACCCAGATCCAGTACCTGGCATGGCCCGATCACGGTGTACCAGATGACTCAACGGACTTCCTGGATTTTGTGGCTCTGGTTCGGAGTAAACGAGCTGGGAAAGACGAGCCCGTTGTTGTCCACTGCAGTGCTGGGATTGGCCGGACGGGAGTTCTCATCACCATGGAGACGGCAATGTGTCTGATGGAGTGCGGCCAGCCGGTGTATCCATTAGAAATTGTGAGAACCATGCGGGATCAGAGGGCCATGATGATTCAGACGCCTAGCCAGTTCAAGTTTGTGTGCGAGGCCATGCTGAAGGTTTACGAGGAGGGCCTGGTCAAACCGCTCAAGTCCTCGCTAGTGATGGAGAAGTATCTAGAGCCAGGAACACAGGACATAAATCAAGCACTGCTGCACTTTACGCTGGCAAAGAGACTATATGCCAGGCTTCAATGAGGAGAGAAAGAAGTGAGAAAGAAATCTAACAAAGGTGAATAAGGTACTTGTTGGGACTTTAAGTGTTCAGGGTTTTAACAgatatatatgttaataatgaATAGAGTGGAGATTGCTGGTGCCATATGTGTGTAAGGGCAGGCCCGTGAATGAATGAGTGTTTTTATATGTGGTCACCTATTATTTGGAAACGAACAATACCCACAAAACAATTCACATTTAGGCCTGTGTTGCAGatgaacatttgtatttttattagaaatatttattgttttagtttcaatATTGAGCCCTGCTCATTCAACATAAGGAACTACttacaaaactaaacaaaacacacttttttttttttttttttctcccaacagggatcttttttttttggttgttctCACTTTCTGGCGGAGGatgaaaatttttatttattttgctgtcaaactaaaaagtaaagtCCACAAGGACTTTAAAGCACTTTGCATTACAGCTGTGATGCAAAATATCAGTTCGCACGCAGAAGCTAAAGGAATACTAAAACGAAAATGATGtgatttatttactcacccttgtgtctttccaaacccatatgagatgttttaaaaaaatattcatgctGCTAATTTCCATACAGTGAAAgataaacaagacaaaatgacagaaaacacaatGATATTAACTACATTCTGAGACTTCTGAAGGCAAACAGCAGTTTTGTGTGAGGATAAGACTGAAGTATAActttaattactgaaatatttcttccagatgGTAGTTCCTCAAGCTTACAGAATTAGTTGTGAAATAAAAGTACCTTTGAGACTATAGAATAATAAACTCTGGGCTGCCATCCCACAGAAATTAATATACAGAAgattcctttaaaatgaaattgattCGTTTTTTGTATACACTCCTCTGGTGTTTTATTATAAGAGAACTGTCATTTAGAAATTTAATCTGCCCGCAGGCAAACATTCCCTGAAAGATATTAGGATTTAAAATCAGAACTCAGTTGAAAGGTCTAGTATTACCTGTAGATGATATAACAAGCTGCATCAATGTTGCAAataataactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaaatctGAATGTTACACACCACAATGTGTCAAATGCAGTACCATGTTGGGGGATCGAatcagaattaatttttaaccTGTTTATCTCTTGTAGCAGGATATCCCACAAgtgtgtcctgtgtgtgtgtgtgtgtgtgttgttgtgttaTTACTGTATGTTTCTGATGTCTGTATGTGTAAGTGTGTTTTGTATTACTGTTGGTGTGAATGTGAGATCCCAAATCACATGTTTAGGCTTGACACATTTAGAGCTGGCGTCTGGTTCAGGAGGTGCGATTTTTAGTTTTGAGCCCTAGTTTTATAAACAGTATTTGTTTAGAAgccatttaattaacatttgctAATCtctcaaatttaatttttgaccTATCGCCCAAATTCACAGGTCACTTCTAGTTGAATGCAGAGTTGAATCCATGCCTGTACTGTTTGTAAGGTACTATCTGCATTTACAGTCAATCATATGATGTTTCTTTATTGGTCATAATTGCTGGAGAACCTTGGTTTTAGGACCAAATAATTCCATTCTATGCTGAACAGGTTTAAggtattaccaaaaaaaaaacaacaaaaaaaaataaacatttaaaatgggaATACGGCATGGAATTTGGGAAAAACGACACACCTCCTGCCTTGTGGGGACAGCACTTTTGCAACAAAGATGTACAATTGTAGACTGgagttaacattttatttgctgCAAATAACAGGAAGGTCAAGTTGTGCCACTTGtccatttttatgaaaatattataaagtgtACATACAATgttgtatattaaaaagaaaatctttaaaataaaaa

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004725 protein tyrosine phosphatase activity molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102207 lncRNA upstream 173516 10515306 ~ 10516332 (+) True G69109
TU102155 lncRNA upstream 231762 10449007 ~ 10458086 (+) True G69075
TU102162 lncRNA upstream 232687 10448701 ~ 10457161 (+) True G69080
XR_006251821.1 lncRNA upstream 254706 10423990 ~ 10435142 (+) True LOC122351945
TU102467 lncRNA downstream 55377 10783465 ~ 10783702 (+) True G69284
TU102468 lncRNA downstream 56274 10784362 ~ 10784599 (+) True G69285
TU102469 lncRNA downstream 58088 10786176 ~ 10786462 (+) True G69286
XR_006251705.1 lncRNA downstream 75772 10803860 ~ 10814619 (+) True LOC122351147
TU102528 lncRNA downstream 105700 10833788 ~ 10834682 (+) True G69340
XM_043248239.1 mRNA upstream 1060 10687317 ~ 10688788 (+) True tmem177
XM_043248164.1 mRNA upstream 19749 10628143 ~ 10670099 (+) True pth2ra
XM_043248165.1 mRNA upstream 19749 10628143 ~ 10670099 (+) False pth2ra
XM_043248815.1 mRNA upstream 87357 10558641 ~ 10602491 (+) True hs6st3b
XM_043248814.1 mRNA upstream 158549 10526145 ~ 10531299 (+) True dnajc3a
XM_043248755.1 mRNA downstream 1074 10729162 ~ 10755885 (+) True epb41l5
XM_043248756.1 mRNA downstream 1074 10729162 ~ 10755885 (+) False epb41l5
XM_043248758.1 mRNA downstream 1074 10729162 ~ 10755885 (+) False epb41l5
XM_043248759.1 mRNA downstream 1074 10729162 ~ 10755885 (+) False epb41l5
XM_043248757.1 mRNA downstream 1074 10729162 ~ 10755885 (+) False epb41l5
XR_006251850.1 other upstream 294618 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 1133201 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 1540182 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 1540187 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 1823951 8864649 ~ 8865897 (+) False cryba2b
TU102754 other downstream 755349 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 1318411 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 1899447 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 2002748 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 2004545 12732633 ~ 12741060 (+) False LOC122351618

Expression Profile