RNA id: XM_043248941.1


Basic Information

Item Value
RNA id XM_043248941.1
length 3267
RNA type mRNA
GC content 0.39
exon number 14
gene id bpifcl
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1713812 ~ 1736320 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTTCTTTTATTAAAGTAGCATTTGAGGAAACAATGACACAGAAACACTTTCTCTATCAAACACTTTGCTGTTCGGTACATTGTGAGcagTTGAGCAATGCAGCTGATATTTCTTTTCCTGATGATCCTGCCGCAAACGTATGCAGATTATCCTGCATTAAAAGCTGTTCTGTCAGAAAAGGGTCTCAGAGATGTGTCTGAAATGATGGGTGTTTGGATACAAAGCAAACTGAAGAGTACTGAAATCCCAGAAGTCCGGGGTGGGGTGGACATTGGCATCGGCACTGTGGACTATGTCATTTCAAACATGCATATTGGGCAATGCAGCATGTCAGGTCCATCTTTGGAATTTGTGAAGGGATCAGGTGTATCAGTAGAAGTCAGTCAACTCTCATTAGCCATCAAAGGCCACTGGACAACGCGGTTTGGCATCATACATGATGGTGGATCACTTGATCTTGCTGTGTACAATACCAAAATCAAAACCATCTTGGAGTTACAGGATGATGCTGGCCGTCTCTCCATCAACACCATTTTCTGTGGTGATAACGTAGGAGGTGTGCACATTCAGTTCCACGGAGGTGCTAGcttttttttccAGCCATTTGTAAGCCATTTTAGTGGACAGATCTCAAAAATGATACACAtgaagGAAATACCCGTCAACATATCCATGGATCAGTATGTATATCTAAGCGTCCTTCTCACATCCTCCCCTGCTGTGACAAATCAAAGCTTTGAGTTAGACATGAAGGGTGAGTTTTACAGCAACAGTTCTCCATCTGAACCACCTTTCTTTCCAAGCAAATTTGACTTTCAGTTTGAGGAAAACTACATGCTTTCACTAGCTGCGTCAGAGTTCCTAGTAAATTCTGCAGCTTATGCATACCTAAGCTCTGAGGTTCTCCAAATCAACATTAATGACAGCATGATACCAAAGAATTTACCGTTTCATCTGAATACCAGCCAGTTTGGCGCTTTCATTCCTCAGCTGTCCACATTATATCCCAACATGGAGATGGAGGTACTCATATATGCCAGCGAGACACCGCTATTCTCCTTTAATTCCGGGGCGATAGATGTTAATGTACTGGCTGCAGGAAAGTTCTCAGTTGTTAAACCTGATGGCAAGCTGGTGCCTCTTTTCAGACTGGATGTGGATGCAAGCTTCAGTGGAAGTGCTCAGATTGACCAAAAACACCTTACtgcagcatttaaaatgaaaaaATTACCTGAAGACTGGCTTTCTACTACCCACACTGCAGagctttaatttgattaattctAAATTgctcataaaaaatGGCTTTGTGGTAATTTGTACTGATGTTGATGATTCTTGGATAGTCTCAATGAAAACTAAGGTCCCAAGGCCTCAACCTCTGTAATTAATCGCTTCATTGGAGTCTTTTTGCTTACATAAGTAATCTGGCTTTCAAAGAAGGTTGGCATGATTTCTTATAGCTAGCTTTTAGAGGAAGATGATTTGTTCTGTGTTCTGTGacaataaattaacatattgaatacacacacacacacacacacacagagaatcTCACAGAATTGAGCACACcccacacatttttaaaaatattatatcttTTCATgtgaaaacactaaaaaaatgacacactaCAATGTAAAGTAGTGATTATATAGCTTATATAACAGTGTAAATTTGCTGTAACCTCAAATAACTCAACACCCAGCCATTAATGTCTAAACAGCTGGCCACAACAGTGAGTACACTGTTGAGTGAAAATTGTGCCCAAAGTCTCAATATTTTGTATCACCACCATTATTTTCCAGCACATATCCAACCCTCACCAGAGCCTCTTCCATTCCTCCATGATGACTTCACAAGGCTGTTTTCATTTGAGGATGCCCCATATATGCTCAATGGGGTTTAGGTCAGGAGACATGCTTGGCCAGTCCATCACCTTTTCCGTGTAGGGTCTAGATCAGCCCAAGGAAAAGAATTCAGTGGCATGGTCAAAGATTTTAATGTGCATTCTGTAAAAGGACACATCACATTACAGGCTTATTCTGGCTATATACACACAACTGATTTGCAACTTACCCTTAAATACCCATGCCAGACAAACAAAGAAATCTTGAGAACAACTGTAAAAACATACAACCCCTTTTTGCTCCGGGGCACCTGGTTGGATAGATAAATTCTTCAAAGGGAGGGGATCATATTCTGCTTCAGTATCTCAGAGTACATGTTGGCTTTCATGGTTTGCTCAATGACCTGTAGCGCCCCAGTGCCGGCAGCACTCATGCAGCCCCAGACCATGACATTCCCACCACCATGCTTAACTGTAGGCATGAAACACTTGTCTTTGTACTCCTCAACTGGTTTCCACCACACATGCTTGATACCATCTGAACCAAATATGTTTATCTTGGTCTCGTCAGAGCATAGGACATGGTTACAGTAATCATACTTTATATTGTAGCAAAGTGTCATTGTCACATCAaaagttataataaattatttacaaaaatgtgagGACTGAGGACTCACTTCTGTGAGATACTGTATAtagaatattgtttttatgctaAATCACatgcaccttctaccttattttgtttatactCATATTAAGAAAAGTAAATCGATCCTATCTCATAagcatttaaattatacttacaagacaggtcacagaagacttgGTGTGTTCTGCTCGGGTCTAGAGATCAGCGTCTTTTTGGCAGGCGAATGtcttggttataataagatatatttagcctatatatatatatatacacacactgaaactatattacaactaaaatactagtataaaatagaaataaaaacaaaggtaTTCAATCTGCATGCTCAGTTGTACAGAGGTATCAATGGCAAGGTCGCCAAGACTGGAGAAGCTGTTACACAAAATCAGCATCTGGCTCTCTCCTAGGTGCATCAGTTCTTTATAGCCACCAGGTGCATCCCAAAGTCAGCTGATGTCATGCATCTGGGAAATTCCCTTAGAAGCCCCATATATAAAGTGCTCCATTTTCATTCTCCGTGGCTTTCTCTTAAGATGTTTTCTTCTCTGCGTCTGCCACACAGCAGTCAGTACAACACAGCTCTAACTAATCGTATTTCATCTCTGGCTATACTTCTGCTAAcatatattaaactaaatgctttgtatcttttaaatttttatttaaatttttaattaatttttaaaagcatgctatgtgtgttctttttttactattgaataaaatgcaatttgctTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251855.1 lncRNA upstream 18284 1693724 ~ 1695529 (+) True LOC122352111
TU99157 lncRNA upstream 21337 1688655 ~ 1692476 (+) False G67023
TU99158 lncRNA upstream 21337 1688655 ~ 1692476 (+) True G67023
TU99160 lncRNA upstream 21337 1688655 ~ 1692476 (+) False G67023
XR_006251746.1 lncRNA upstream 39215 1671371 ~ 1674598 (+) True LOC122351376
TU99198 lncRNA downstream 33060 1769380 ~ 1769588 (+) True G67048
TU99207 lncRNA downstream 42594 1778914 ~ 1779210 (+) True G67057
TU99214 lncRNA downstream 125534 1861854 ~ 1865589 (+) True G67064
TU99217 lncRNA downstream 125534 1861854 ~ 2086178 (+) False G67064
TU99224 lncRNA downstream 159162 1895482 ~ 1903183 (+) True G67071
XM_043248412.1 mRNA upstream 25344 1660010 ~ 1688469 (+) True LOC122351375
XM_043248887.1 mRNA upstream 397918 1299556 ~ 1315895 (+) True LOC122351663
XM_043248881.1 mRNA upstream 474790 1231173 ~ 1239023 (+) False LOC122351657
XM_043248880.1 mRNA upstream 474790 1231174 ~ 1239023 (+) True LOC122351657
XM_043248878.1 mRNA upstream 634566 1067025 ~ 1079247 (+) False LOC122351655
XM_043248603.1 mRNA downstream 125489 1861809 ~ 1865607 (+) True ndufa4l2a
XM_043248592.1 mRNA downstream 409185 2145505 ~ 2201714 (+) True LOC122351505
XM_043248142.1 mRNA downstream 518237 2254557 ~ 2258615 (+) True LOC122351218
XM_043248238.1 mRNA downstream 758161 2494481 ~ 2499298 (+) True nr4a2a
XM_043249416.1 mRNA downstream 1162843 2899163 ~ 2908133 (+) True pou1f1
TU98836 other upstream 578824 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 853657 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 908804 797133 ~ 805009 (+) True G66727
TU98627 other upstream 1251784 459574 ~ 462029 (+) True G66657
TU99551 other downstream 1458475 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 2177318 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 2211716 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 2245207 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 2384207 4120527 ~ 4125450 (+) False scrn3

Expression Profile