RNA id: XM_043248950.1


Basic Information

Item Value
RNA id XM_043248950.1
length 2275
RNA type mRNA
GC content 0.43
exon number 14
gene id ppp2r3b
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16938284 ~ 16954349 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGCATGAACTCTGCTCTCGCGATATAAACTTTCCCGGTTACCTGAGGAAACGAGAGTTTGATTCAAAGTGTACCCGTTTGAATGATCGAAAACAAACATCCAAAACGCATCTTAATAACAGAAGgttatttctatttttggggGGAGGATCTTGGCTGCATGAAGCAAACCAGAAATGGCATCACCACAAACGCTTCAGCCTGTCCTGAAGATGAAGGTCGACGAGCTCTTTCTCTTTTGGTTGAGTGAGCCGAGTACTCAAGCGATGCTAAAAGACTACCTCAACAAAATCAAGAATGGAGAAGTAATAGAGCTAAGTCATGCTGATTTCAAGGGCACAAGCACTTTGGTATTAAcagaaaataacaacaacaacattgcCTCAAAGATTAATGCTACAGAGAGAATGACTGCGGCCCTTGGTGCCCCGTGCAGCCCTCCTTCAGCCACCCTGCCATCTGCGAGTGGCAGCAATAACAGAGTGGGAGTGAATGCAAGGGCCCTGCGACGCTCTGTCAGCACTAAGAAGcaGGCGCAGGCTAAGAAAGAAGAGCCCGTTACACCAGCTTTAAGTGAAAGCATTCCAAAGTTCTACTTCCCTCGAGGACAGCCCCAGGCCAATATCAACATAGACAATCTTATTTCCaagatagaaaaaatattttctcaatttCCTGATGAAAGAGTCACTTTAAAAGACATGGGGCTGGTCGCCAAGGCCTGTGAGAGCCCACTCTATTGGAAAGCTCCATTGTTCCATGCTGCTGGAGGAGACAGGAGGGGATATGTGTCCGTTCACAAGTTTGTGGCAATGTGGCGAAAAGTGCTTCAGACCTGTCATGATGACGCATCCAAATTTCTTCACCTTCTGGCCAAGCCTGGCTGCAATTATTTGGAACAAGAAGACTTTATTCCATTCCTGCAGgatgtgGTGGATTCACATACAGGTCTGGCATTTCTAAAGGAGGCTTCAGACTTTCACTCACGCTACATTACCACTGTAGTCcaaagaatattttataatgtaaaccGCTCATGGACTGGAAAAATAACATGTTCAGAACTCAGAAGAAGTAGTTTTCTACAGAATGTAGCACTtctggaggaagaggaagagattAATCAGTTGACCGAGTTCTTCTCTTATGAACATTTCTATGTTATCTACTGTAAGTTCTGGGAGCTGGATACGGATCATGACTTGTACATAGACCAGAGAGACCTGTTGCGACATAATGATCAAGCCATATCCCACCGAATGATTGAGAGATTATTCTCAGGAGCTGTAACCAGGGACAGAAAGATTCGCAAAGAGGCCCGACTGAGCTACTCTGACTTCGTATGGTTCCTCATATCTGAGGAGGACAAAAAGACTGAGACCAGCATAGAGTACTGGTTTCGCTGTATGGATCTGGATGGGGATGGAGTTCTATCCATGTATGAGCTGCAGTACTTCTACCAGGAGCAGTCTCAGAAGCTCGAGGCCATGGCCATTGAACCACTGCCTTTTGAGGACTGTCTGTGCCAAATGTTAGACATGGTTAAGCCAGAAATCCCAGgaaaAATCACTCTCAGGGACTTGAAGAGATGTAAACTTTCCCATATTTTCTTTGACACCTTCTTCAATGTTGAGAAGTACCTTGACCACGAACAGAGGGATCCCTTACTGGCTGCAAGGgATGCTGAGACAATGGGACAAGAAATTTCTGACTGGGAGAGATATGCTGCAGAGGAGTATGATAACTTGGTAGCTGAAGAAACTGCAAACGAGCAGTACAATGATTGTGATCAGAGGGCTGAGGTATCATGTGATGCTTTTAGGATCAGCACAGACTTCTAATGGCAGGATGAGTAGAGTTGAAACAGGTAAGACACTAGGTGCAGGGTTCCTTCTGTGTTCTTCCCCCACTTCTGTTCCTCGTGGCTTCACCTGGTCAGTGTTTAGGTCATCACGTAACAGATTAAAGTATGTTTTACAGTTTCGTCATACTCCAGTTTTATCAGGTGTCTTTTTAATGGCTTGCATTCACATATCAGTTCCTAAACTCCTTTGCCCTCCAGTTGGTTCTAGAAGTTTATCCATATGAATATCCTCTctgattttgacttttattttaagcatcatCAAAGTACAGGACTTTGTATAAATTCCATTCCAAAGGTATGAACAATCCAAGGATTGTGATTTGATATCATTGATTAAATCTGTTGGGCTAGGTGAAAtacattgtcattttaattcaacatacgatttttgcttcttttcttttttt

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105081 lncRNA downstream 19828 16917224 ~ 16919314 (-) True G71035
TU105039 lncRNA downstream 49713 16886805 ~ 16889429 (-) False cd247l
TU104975 lncRNA downstream 71620 16866492 ~ 16867522 (-) True G70981
TU105028 lncRNA downstream 72720 16866178 ~ 16866422 (-) True G71006
TU105027 lncRNA downstream 73553 16865278 ~ 16865589 (-) True G71005
TU105257 lncRNA upstream 258527 17212876 ~ 17297150 (-) True G71117
TU105275 lncRNA upstream 384771 17339120 ~ 17339530 (-) True G71131
TU105278 lncRNA upstream 386196 17340545 ~ 17340915 (-) True G71134
XR_006251856.1 lncRNA upstream 389367 17343716 ~ 17351712 (-) True LOC122352115
TU105286 lncRNA upstream 409838 17364187 ~ 17368255 (-) False ncam2
XM_043249544.1 mRNA downstream 36968 16898663 ~ 16902174 (-) True grtp1b
XM_043248994.1 mRNA downstream 49595 16886753 ~ 16889547 (-) True cd247l
XM_043249605.1 mRNA downstream 171957 16761873 ~ 16767185 (-) True LOC122352097
XM_043248104.1 mRNA downstream 178970 16752003 ~ 16760172 (-) False LOC122351201
XM_043249684.1 mRNA upstream 162668 17117017 ~ 17131427 (-) True LOC122352140
XM_043249683.1 mRNA upstream 178121 17132470 ~ 17136795 (-) True slc25a6
XM_043249695.1 mRNA upstream 182792 17137141 ~ 17143357 (-) True asmtl
XM_043248286.1 mRNA upstream 190507 17144856 ~ 17151079 (-) True p2ry8
XM_043248289.1 mRNA upstream 190507 17144856 ~ 17150951 (-) False p2ry8
TU104984 other downstream 115367 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 115448 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1167278 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 1539705 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 1633167 15303103 ~ 15305975 (-) True G70549
TU105258 other upstream 281523 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 1615406 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2766149 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2841908 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 2927475 19881824 ~ 19893315 (-) False mfsd6b

Expression Profile