RNA id: XM_043248970.1


Basic Information

Item Value
RNA id XM_043248970.1
length 2566
RNA type mRNA
GC content 0.45
exon number 12
gene id spopla
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9601986 ~ 9610746 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGCAGGATAAGCAGCACACTGCAAGCTACAGTGATGGGCTGCTTTTGAAAAGACACAAATACACTTCAGTCGTAAATAGTAGCGATTAAACTTAACAGATCCACAAGGACCTCCCGAATCTTGAATTTAACAGTATTGACAGAATGACGAGAAAAGGTTAAGTGGTGAAAGCTTTGGGACCGTCAGCGCTTCTTGTAGCGGGGAGTGAGCTGGCCATGTCAGGGGTCCCAACCCCTCCTCCTCCAGGGGAGATGTCCAGTGGGCCTGTGGCGGAGAGCTGGTGCTATACCCAGGTCAAGGTAGTGAAATTTTCCTACATGTGGACCATAAACAACTTCAGCTTCTGTCGAGAAGAGATGGGTGAAGTATTGAAGAGCTCTACATTCTCCTCAGGGCCTAATGATAAGATGAAATGGTGCCTACGGGTCAATCCGAAGGGACTGGATGATGAAAGTAAAGATTATCTATCACTATATTTGCTACTAGTTAGTTGTCCAAAAAGTGAAGTCAGAGCCAAGTTCAAGTTTTCTTTACTGAACGCTAAACGGGAGGAGACAAAAGCTATGGAAAGCCAAAGAGCCTATCGGTTTGTCCAAGGCAAAGACTGGGGCTTCAAAAAATTTATTAGGAGAGATTTTCTGCTTGATGAAGCAAATGGGCTGCTACCAGATGATAAACTCACGTTATTTTGTGAGGTAAGCGTTGTCCAGGACTCTGTGAACATCTCCGGACAGTCCAACATGAACATGTTGAAGGTTCCGGAGTGCCAGCTGTCCGACGACCTGGGTAACTTGTGGGAATGCTCACGCTTCACGGACTGCACTCTATATGTGGGAGGCCAGGAGTTCAAAGCCCACAAATCCATCCTGGCAGCAAGATCACCGGTCTTTAATGCCATGTTTGAACATGAAATGGAGGAAAGTAAAAAGaACCGAGTTGACATCAGTGATGTTGAACCGGAGGTTTTCAAAGAAATGATGGGCTTCATATACACAGGAAAAGCACCAAATTTAGAGAAAATGGCTGATAGTTTATTGGCCGCAGCGGATAAAgaaaagaaagtcatacaggtttggaacaacatgaaggtgaacAAATGCTGGTACGCTCTGGAGCGCTTAAAGGTCATGTGTGAGGAAGCCCTTTGCAACGGCCTCTCGGTGGAGAACGTGGCAGACACCCTCATCCTGGCCGACTTGCACAGCGCAGAGCAGCTCAAAGCACAGGCCATAGATTTTATCAACAGGTGCAGTGTCCTCCGACAGCTGGGCTGTAAAGATGGGAAAAACTGGAATAGCAATCACGCCACGGACATAATGGAGACCGCGGGCTGGAAGTCAATGATCCAGTCTCATCCTCACTTAGTGGCGGAGGCTTTCCGCGCGCTCGCGTCAGCGCAGTGCCCCCACTTCGCTCTGCCAAGAAAGCGCCTAAAACAGTCGTGACGACGTTCCCGCTGCTCTCTTGGGCCAGAAAACTGCGGCGTTTAGACTATCCCATTGTCATCCGACCCGACAGCACGTGACTGGGACAGGCTGGCTTCTGAACGGCAGCGAAAGCCGTTCACACCCTTCCTGAGCGATGGGTTCGGCATCTGAGCTTTATTTTGCGAATCTTTCTGTCACTTCAAACAGCCTTAAACTATCTGCCATGACTCTTGTGTGGAGTATTTGAATTCTCTCAGTTCTACTCTGTGCCTGCCTTGTCCCATGAGACCAGGCCTCTTCCCTGTTGCACTAGTTCCCAAAGTCTCGCTGTTTTATATGGCGCTTCCTAGGAATGTGTCAGAAGTTCGATCCACGGGAAATAGTATATATTCCTAATGTTTAGTTGTGCGACTagacattaattaaatgttaacacAATGAGTGCAAGGTCATTTCTTTACACTTTTTGAAAAGATAGCTATGCCCCATATTGATGGCACGATTTCTATGTAAAGACACGGTTAAACCACGGGGAGGGGAGGAGAGAGTACTAGTACTATTCCATActgtgggggaaaaaagcatttcagaTATTTGTATTGATGTGTGTGACAAGGAATTGTTGTTTGTGTCCTGCCCCTTGACctgtgaaaacatttaaagtgtcaTCTATTCACAATTTTACAAGCGACTACATTTTTAGACACGATAGCGTTGCTTCCCTTCAATTGGTCTGCCATATACAGACAAGTAGTTTGAAGTTGTCTGGCCcataatgcatttgtgtatCCTGATTGAACTAGACAATCCATCTTTAAACACATTGTCCTCTGTGATCAGGAAATGTTTGGATGCTGAGCATCAGAGTGTGGCATATGGATGAACTGATGAATGTGTTTGAGAGGTACAGATAGATTGATTGTCATCGATCTATCAGAGATTTGTTTTGAGCTGTGGCGTTACAGTCCAATTGACAGTGATTTAGAAGAGGACTCTACATTGTGTCATGCTAAACTGACTTGTTCTGTTAAAGGACATGTTTTGTGAAGATTCTGGAATTTGTTccgtcttttaaaaatattgtctgCGAGAATGCCTGCAttaactcattaaaaaaaaaaacattttcaacatcCA

Function

GO:

id name namespace
GO:0031397 negative regulation of protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101892 lncRNA upstream 26332 9575421 ~ 9575654 (+) True G68908
TU101881 lncRNA upstream 189251 9255332 ~ 9412735 (+) True G68901
TU101878 lncRNA upstream 360599 9240938 ~ 9241387 (+) True G68900
TU101875 lncRNA upstream 407683 9180904 ~ 9194303 (+) True G68897
TU101872 lncRNA upstream 417418 9180751 ~ 9184568 (+) True G68896
TU102047 lncRNA downstream 279905 9890651 ~ 9891580 (+) True G69003
TU102091 lncRNA downstream 444750 10055496 ~ 10056501 (+) True G69028
TU102094 lncRNA downstream 450312 10061058 ~ 10061611 (+) True G69031
TU102095 lncRNA downstream 450939 10061685 ~ 10061887 (+) True G69032
TU102096 lncRNA downstream 451462 10062208 ~ 10062436 (+) True G69033
XM_043248061.1 mRNA upstream 27232 9570400 ~ 9574754 (+) True hnmt
XM_043249641.1 mRNA upstream 34989 9443125 ~ 9566997 (+) False thsd7ba
XM_043249259.1 mRNA downstream 17868 9628614 ~ 9652625 (+) False LOC122351877
XM_043249260.1 mRNA downstream 21275 9632021 ~ 9652625 (+) False LOC122351877
XM_043249264.1 mRNA downstream 22407 9633153 ~ 9636711 (+) True LOC122351880
XM_043249263.1 mRNA downstream 26645 9637391 ~ 9639325 (+) True LOC122351879
XM_043249265.1 mRNA downstream 28631 9639377 ~ 9641034 (+) True LOC122351881
XR_006251853.1 other upstream 45339 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 452320 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 452325 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 736089 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 1168503 8431145 ~ 8433483 (+) False sumo3b
XR_006251850.1 other downstream 717985 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 1872691 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 2435753 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 3016789 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 3120090 12730836 ~ 12730962 (+) True LOC122352187

Expression Profile