RNA id: XM_043248989.1


Basic Information

Item Value
RNA id XM_043248989.1
length 3458
RNA type mRNA
GC content 0.55
exon number 14
gene id cobll1b
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 23981970 ~ 24029114 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGAGTTGCAGAATTTTAAGGGGGGTAACGGGACAGAAGTGATGCAGGAGCGACCCACGAGCCGCGGTTGGAGTCGGGAGAGGCTCCGCAAAAGCTGCTggagctgttgttgttgtttttgttgatgaTGATGCTGTTTAGAGAGACTGATGACAGCTGACAGCCGCGCGAAAGTTCAAGGGCGACCGAGTGCCAGGGATTTCAGAGCCGCGCCGGCCGCTGCGGGGATGGACGGCGACGCACACAGCAGACCGCCTGACCGAAGCAGGAGATCATCGAAAAACAaagcacctcctcctcctcctgtccTGAAAGGCTTGAGTCACAAGCGCCCAGCGTACCCTCACCCTGCCATGGAGCAGAAGGAGAACCCGCTGGAGCAAGACCTGACTCTTACCGTGGTCCTTCCTGAAGGGGTGGAGAAGACCGCGGTCGTCCACGGCAGcAAGCCCATGATGGACCTGCTGGTCATGCTTTGTGCCAAGTATCACCTGAACCCGTCGGGCCACACGATAGAGCTCATCACCACCAACAGAAACCATGTGAAGTTCAAACCCAACGCCCTCGTTGGAGCGCTAGAGGCCGAGAAGATCCTGCTGAAACCGAAAGGCATGGAGGACAAAAGCAAAAAGACAGGACCACAGATGCCGGAGGCAACCGTGCGGTTAGTCATCAACTACAAGAAAACCCAGAAAACCATTCTCAGGGTGAGTCCTCGGGTTCCTTTACAAGAACTGCTACCGGCCATCTGCGAGAAATGCGAATTTTACCCGCAGACCACGGTTTTATTACGAAACGTCCACTCGGAAGACACTTTGGACCTGAGCGGCTCCCTCAACGATTTTGGCCTGAGGGAAGTGTATGCGAGAGACACCAAAGTTATTAGCCCTGTCAGTCCTATTAGTCCTGTAAGCCTGCCTCCATCTCCAACTCACTCAGaaatatttcatCATGGGAAGGAGAAAATCCAGAAGGAGAAAGATAAGAGGCGGTTCAGCTTATTTCGGAAAGGAAGTAAGAAGCAATCTGAACAGTCTACGACCGTGAGCGCACCAGCATCTCCGGTGCACAGGAAGCAGAGACCAGTCAGCATGAGTTCCTTCAGCGCGCATTCGCCCATTACGTACGACTCCAACACCATGCCCTCCGACACGCCAAAGAAAAGACGGGCCCCGCTGCCGCCGAGCATGATGTCACAGAGCATGCCTACCGACCTTGGTCACCCGGCCGCTGTGCATCCCGATGGAAACCAGAATATGGCCCCTTTGAGCCGGGGATCCTCGACAGAGTCGTCCTTCAAGAAGTCTACCAAGAGGAAGGCCCCTCCGCCCCCCAGCTTGAGCAGCGCAGCCCCTCCTgatgaaaacacacaggacCGGAGCATGACAGAAGCGCCGTTGGCGTCTCCTCTGGAGGAGATCAGGGAACAGGAGGAGGTGAATGTGAGCGCTGAAGGTCAGGTGGCCGTCgtggaagaggaggaggacaaCAGCAGCCTCAATCTGTCCGCCGACATCTCTCTGGACTCGGGCCGCGCCGGAACAGCAACTCCTTCTCAGGATTCAGAGACTCTAGATCCGCCGTGTGACCTCTCCACAGATGCGGAAGTTGCAGAAGAAACAGTGAATGGAGAGATTAAGTTGGACCGGACCGCAAGCTCACATATTAATTCAGAAGAGATAGAGCCACCGACGGAAAAGACAGAAGAGGCATGTCAGACTTCAGAAAGTGGCCCTGCTCTGGAGGAGACCACGGAAAAGCCTGCGTCTTTGTTCAACAAGCTTCAAACCTCCGAATGCGGCATCCAGACGTCGCACGCGGACTTGCAAGCGCGGGGCACAGAGTCCATCCTCGAAAACCAAACTCCAACGACCGTCCCCAGTTTGGTCAGCTTCGCTCACACTGAAACGCAAACGCAGATGGAGCCCCAGAAACCCTCAAGTGAGCCGTCGGGCTCGTGCACTGAACCCTCCGCAGCGCCGCATGAGTCCTCCGTGGGGCTGAAAAGAGACATGGCCACCTCCACAGAAGAGCTGCGTGCTCCTGAACCGCCTTCGCCTGCCGTCCAGGCGCCAGAGGATCTGGCATCCACCCCAACCTCTAAAGCGAATACTGTAAAGCGCATAGCAGACGGCGAACCCAAACCCAAACCGTCCAACGAGCTCACCCGCGAATACATTCCCAAAGTGGGCATGACCACCTACACCATCGTGCCTCAGAAGTCTCTCGAAAAGCTGCGCTTCTTTGAAGTAGAGTTGACTTTGGAGCCCAATGTGGATTACAAACCTGAAACTAAGCCCGTTTCCAATGGTACAGCTGCTGTTAATGGCCATCAGAACGTCTTTGCGCAAACCAGTCCTTGTACTTCACCTCCAGCTGCCGTTTCGTCCCCTGTAGAAGGAACCGAATGCAAGAAAGTTCCCCCGGCGACAAGACCCAAACCAGCTTCTTTCCGCCTGCCGCAGCACAAACGAACGGCAGGGGATTACGTATCCTCCGCTGCCGTTCGCCGAGCGAGTGTGGGCAGTAACAGCAGCGGCAGCAGTTGTTGTAGCAGTCCCGCGCCCCGGCCCAAAGATACCGCAAGCAGCCCGCAATCGGACGTGTTTCCTGCACTGGACAGCTTCCCTCCTCCGCCGCCGCCGGTGCAATGGGATGATGAGCAGAGCGCCAGAGCCAGAGATGCACCTCGAACTGCAACGGCGGCTGTCCCTCTGCCCGAAGCTCCCAAATTCGGAGTGTCCCGTCAGAAGAGTCTTCCCACAAACCCCACACCTTCGCTGAGTCTAGAGAAGCTGAGAAGCTTCGCCGCTCCCAAACCCTACTCGCCCTCTTCGCCCTCGCGCTTCGCTCAGGCTGTGTCTTCTGCAGTGAAGAGGACCCAGTCGCTTTCCCATCAACCCCTGGGGCAGTTACCGCGCACGCATCTTCTCACAAAACAGAGATCCATTACGGAGTCCCCTGAGCCTCCGGCCAGCACTGTGACAGACAATGGAGAAGGACGCACAGGGAGATCCGGAGAGGCCCCATGGCAAACAGCAGGCCCCGGCGGTCCAGCGCCGAGCTCCACCCGAGACGGAGGCATGGGAACATGGGTCTGAAGCCACGTTGAAGGGAATGTCCGAAGTCTTTCATTCGGTGGAAGAATGAAATGTGCCTTCGTTGATGGGATCCCAGCATCACTTGCCTTCAAATATTACGCAGGTCAAGAGAAGATCTTCCGTCTTCATTTTTGCATAGTCATATTTGGTTTCTCACAAATCGAGACTTtcaacactttcttttttttttgaatctgGATGTGGTCAGAACTGTGTAGAGCGCAGTGTACTtatcattcactttttttccctaACACAGCAGTTTTTAATTAGCTATGTGCCttaaataaacctaaaaaaattaaatgcatcatcacacacacacacaaaaaagaaataaaataaattagatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107925 lncRNA downstream 732 23926223 ~ 23981238 (-) False G72929
TU107928 lncRNA downstream 732 23926223 ~ 23981238 (-) True G72929
TU107919 lncRNA downstream 68084 23912173 ~ 23913886 (-) True G72927
TU107908 lncRNA downstream 69934 23911453 ~ 23912036 (-) True G72923
TU107903 lncRNA downstream 347893 23558753 ~ 23634077 (-) True G72918
TU108005 lncRNA upstream 224248 24253362 ~ 24285690 (-) True G72980
TU108009 lncRNA upstream 252877 24281991 ~ 24284165 (-) True G72984
TU108125 lncRNA upstream 483980 24513094 ~ 24521308 (-) True G73077
TU108133 lncRNA upstream 535767 24564881 ~ 24571112 (-) True G73084
TU108266 lncRNA upstream 710212 24739326 ~ 24745938 (-) True G73160
XM_043248342.1 mRNA downstream 21877 23943985 ~ 23960093 (-) True grb14
XM_043249022.1 mRNA downstream 63318 23914681 ~ 23918652 (-) True LOC122351750
XM_043249021.1 mRNA downstream 264915 23716109 ~ 23717055 (-) True LOC122351749
XM_043249556.1 mRNA downstream 332410 23564379 ~ 23649560 (-) True LOC122352061
XM_043249534.1 mRNA downstream 555536 23419262 ~ 23426434 (-) True gjc4b
XM_043248992.1 mRNA upstream 395 24029509 ~ 24038130 (-) True slc38a11
XM_043249607.1 mRNA upstream 113552 24142666 ~ 24193802 (-) True csrnp3
XM_043249564.1 mRNA upstream 396412 24425526 ~ 24482087 (-) True stk39
XM_043248138.1 mRNA upstream 500558 24529672 ~ 24533048 (-) True spc25
XM_043248139.1 mRNA upstream 500558 24529672 ~ 24532778 (-) False spc25
TU107931 other downstream 21645 23956219 ~ 23960325 (-) False grb14
TU107929 other downstream 50641 23930207 ~ 23931329 (-) True G72930
TU107329 other downstream 1470663 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 1674957 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 1758303 22171463 ~ 22223667 (-) False cerkl
TU108001 other upstream 191408 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 202121 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 242341 24271455 ~ 24280708 (-) True G72978
TU108324 other upstream 998471 25027585 ~ 25030965 (-) True G73201
TU108463 other upstream 1319664 25348778 ~ 25349640 (-) True G73301

Expression Profile