RNA id: XM_043248995.1



Basic Information


Item Value
RNA id XM_043248995.1
length 729
RNA type mRNA
GC content 0.46
exon number 6
gene id zp2l1
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17559528 ~ 17574374 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGATGCTTGTGTGGATATATACTAAAGGAGGTTCTGAGGAGCTGGCGGCGCTTTCTGAATGTGTGATGAGAGGCGAGTGTGTCCTGACGCTGCAGTTCTTCTGCTGTTCAGTGGGTGGTAGCAGAAACCCCTCTGACAGCCCGTCTCGCTTTAATAAGCAGGACTTGACTTTCGAGTGTACACGAGATGGTCTGTTTGTAGTTGTGACAATAAGAGATGCAACCATTCCAAGGATAAGTTTAGAGGCAATCAGCCTTTTGGAAGGATGTGATCCTCTTTGTCCTGTTGGCACCACTGCTGCTTTTGCGTTCCCCGTCACTgcttgtgacatcataatgaTGATGGATGTTGACTTTGTAGTCTATGAAAATTTTACGATTTCTGCCTAAGTAGGTGTTGGACCTCATGGCTCTATCACAAGGGACAGCCATTATGAGCTCCTCTTCCAGTATAGATATTCTTGCACCAGTGTTAAGGcattggttgctaaggtcaacaccattcctcctccacctcctatGGCTGCTCCTGGTTCTTTGATAGTAGAGCTTAGACTGGATAATGGGCAGTGTTATGCTAAGGGATGTATGGAAGCATACAAAACATACTCCTCATACTATGGTGACGCTGAGTATCCTGTGATGAAAATCCTGCAGCAGCCAGTCTACACTGAAGTGAGTGTTCTAGAAAGGACTCATCCCAAAATTGTACTGACTTTGGGTCGCTGA

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU105286 lncRNA downstream 191273 17364187 ~ 17368255 (-) False ncam2
XR_006251856.1 lncRNA downstream 207816 17343716 ~ 17351712 (-) True LOC122352115
TU105278 lncRNA downstream 218613 17340545 ~ 17340915 (-) True G71134
TU105275 lncRNA downstream 219998 17339120 ~ 17339530 (-) True G71131
TU105257 lncRNA downstream 262378 17212876 ~ 17297150 (-) True G71117
TU105295 lncRNA upstream 17590 17591964 ~ 17592183 (-) True G71149
TU105298 lncRNA upstream 19339 17593713 ~ 17593933 (-) True G71152
TU105306 lncRNA upstream 28991 17603365 ~ 17603623 (-) True G71160
XR_006251765.1 lncRNA upstream 33167 17607541 ~ 17629953 (-) True LOC122351532
TU105331 lncRNA upstream 33557 17607931 ~ 17608190 (-) False LOC122351532
XM_043248036.1 mRNA downstream 37968 17373161 ~ 17521560 (-) False ncam2
XM_043248035.1 mRNA downstream 37969 17364193 ~ 17521559 (-) False ncam2
XM_043248033.1 mRNA downstream 37969 17364193 ~ 17521559 (-) True ncam2
XM_043248528.1 mRNA downstream 243710 17299245 ~ 17315818 (-) True appb
XM_043248530.1 mRNA downstream 243713 17299245 ~ 17315815 (-) False appb
XM_043248852.1 mRNA upstream 75601 17649975 ~ 17652121 (-) True dnajc28
XM_043249540.1 mRNA upstream 453980 18028354 ~ 18038668 (-) True ralba
XM_043249405.1 mRNA upstream 622752 18197126 ~ 18205461 (-) True hspbap1
XM_043248996.1 mRNA upstream 676862 18251236 ~ 18366267 (-) True sema5ba
XM_043249266.1 mRNA upstream 852698 18427072 ~ 18492873 (-) True adcy5
TU105258 other downstream 304037 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 735753 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 735834 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1787664 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 2160091 15389849 ~ 15399437 (-) False tmtc4
XR_006251863.1 other upstream 995381 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2146124 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2221883 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 2307450 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 2914790 20489164 ~ 20503890 (-) False G71938

Expression Profile


XM_043248995.1 Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: -0.5 to 0.5.
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XM_043248995.1 Expression in each Bioproject

Bar chart with 1 bar.
XM_043248995.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 0.175.
End of interactive chart.