RNA id: XM_043249002.1


Basic Information

Item Value
RNA id XM_043249002.1
length 4448
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC122351723
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20411395 ~ 20417109 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGAGGCTTACTACAGAATCAGGAGACGCTCTCTTGGTGATCTTTCTGATGAGGAACTGCTTCTGCCTGTTAGAGAGTACTTGTCAATGAAGAGAACAGAGGAAGAAAGACTTAAACTAGAGGATGAACTTGAATTAGGCTATTCTGCTTCTCCACCAAGTCTTAGCCCTGTACGCTTTGAACTCTCTGCACTGCGTCACCCGTCACCTAAGAAAGCTGCATATGATGAGGAGCAAGGGGAAGAAGTTCCATCCTATGACTCCTATCGCATTCCATCTAAATATGAGGCTGGTCCAAGCTATATTGACTTACGCCAGCGTCACGATAGGGCAACATACAGACCTCCAAGACAAAAGCAAAGATTATATGAGGAAAAAGAGGATCAAGAACTGCTTAGGTCAGTAACAACAACCACAAAGTTAACGTCCTACAAGAGCAAACTGCAGCACATTGAGTTTGAGGAGAAAACAAAGGTCAAAAGAAAGGAGAAAACAAGGGTGTCTATGTCAGCAGTAACTGAGGCTGCAGTCATAACTGATATGCCTACAACATTTGTTCCTGGCTATGCTACAGCAACTCGTCCTAAGAAACCTTCTGCATCTCTGGCAGAAAAAGAAGTGGTTAGAACACCTTCACCTGAAAAGACACGCCCACGTTCCCCCAGCTTTGAGAAAGCAGACACTACACCAGACTTATCAACAAAAATTGATTATATGTCAAGGTATGAGTCAAGAAAGAAGGCCttgaaaactgaaagaaagtTCGAAATTGTGACCCAGGAGCCTTTTACCCTTGACCATGCTCCAAGAGTGACTGTAAGAATGCGCTCTCACCGTGTGCCAATTGGTCAGAACACTAAATTCACACTGAATGTCCAATCTAAGCCAGAAGCACAGATTAAATGGTACCACAATGGAGTTCAAATTGAAGAAAGCAGAAAATACCGTATGTTTAACATGAGTGGCGTTTTGTCTCTTCAAATCATTGATTGTCAGGAAGAGGACAGTGGCACCTACCGTGTCGTCTGCACAAATGCAAAGGGAGAGGCCTCTGACTATGCCACTCTCGATGTTGCTGGAGCCACCAACTCCTTTGTCCCTGAGATGACAAAAACAGATGTTTATCATGTTTCATCTACAAAAGCAGCATCTGTATCAGAAACACAAGTGGAAGTATCCGAAACTAAAACAGACAAGATAGAAGAGACAATTAAGACTGTTGTTCAGGAGAAGCAAGTAACATCTGAAATCAAACTTGAAACTATGGAAGTGACAGCAGTTGAGGATGTTGTGGTAGAAAAAATTTCTGAGACTAAACTTGAATCTACAGAAGTGAAAACATTCGTGGAAGAAGTGGTTGAGGAAAAGAAGTCAACTCTCCCAGCCACAATTTTGACTAAACCACAATCACTAACAGTGTCTGAGGGAGAATCAGTTAAATTCACATGTGACGTTGATGGTGACCCTGCACCCACTATAACATGGATGCGAGAGGCACAAGTAATTGAGTCATCTCATCGTCACCATATTACCTCAACTGAATTTAAATCAACTTTTGAGATTACCCAAGTTGAAATGTCAGATGGAGGTAATTACACTGTAGTGGTACAGAACTCTGAAGGTAAACAGGAGGCACAGTTCAGCCTAACTGTTCGTAAACCAACACCTGTACAGAAAGTTGTTGCTTCTCCTCCTAGAGTGAAATCTCCAGAGTCTCCCCGTATAAAGTCACCATTTGGAATTAGGTCTCCACAGAGAATTAAATCACCTGAACCAATTAAATCTCCACAAAGAGTTAAGTCCCCACCCATGGTAAAATCACCTACtcctaaagaaaaaacatccaAGCCAACCTTTTCAACTGAACTCAAAGACATCTCAGCATCTGCAGATACTATTATAAAGCTTACAGTGAAAATGTGCGGTGAGCCTAAGCCATCAATCTCTTGGATGAAAGATGGAAAAAACCTCTCTCAAGGTGGAAAATATGAAATCTTTGAAGAACATGGTTCAGCACATCTTGAAATCTATGAAGCTGATGTCTCTGATAGTGGAGTATACACATGTACAGCCAGAAACAGTGCTGGATTTGTTACTACAAACTGCACAGTTACTGTTCAAGCACGGACAACAACAGTTGCAGTGGAAAGAAAAGCAGAGTTGACAGAGCAAATAGTGAAAAAGGAGATTGCCTATGAGGAAGTACAGTCCTTTACAGAAATGAAAGCATCAAAAACCCAAATGACGATGAGTCAAGGTCAGACTATTACACTACGAGCCAGCATACCTGAAGCCTCCGATGTCAAATGGATCCTAAATGGAGTCGAGTTATCGAATTCTGAGAACTACAGATACGGTGTGTCAGGAAATGATCACACCCTGACAATTAAAAGCATCAGCCATCATGACCAGGGAATTCTCACATGTGAGGCCAAAACTGAACATGGTGTAGTCAAATGCCAGTTTGACACGACCGTCAGTGCTATGCGCTCAAATGCACCAAGTTTCCATGTGCAACCACATTCCCAGAATGTAAACGAGGgacaaaatgtcacatttacatGTGAAATCACTGGTGAACCTTCTCCTGAAATTGAGTGGCTCAAGGATAATTCAACAATATCTATTACATCGAACATGAAATTGAGCCGGTCTAAGAATGAGTACACACTTGAGATTCACAACGCTACCATTGAAGACAGTGGAAAATACACAGTAAAAGCAAAGAACAAATTTGGACAGTGCTCTGCAACAGCATCACTGAATGTCCTCACTCTGGTTGAGGAACCTGCCAAAATGATAATTGTGGAGAAGGCCTCTGATGTTGCGAGCATGCAGGGCAGTTATTCTGCCAAGCATGTGGTTTCAAAATTGCAAGAGACATCCTTCAGCGGTTCCAGCATGGCTGAAGTTAAATTTGAGAGCATGTCAGCGTCTAGCATGACCTCCATGACTTCTGAAAGAATGATAGCTATGAGCTCCAGCAGTATGATGGCAATGTCCAGTCACTCGCATGTTGAGGGGTCATCCATCAAAGCCATTTCTCATGGCCGCAAAGGTATACCACCAAAGATTGAGGCTGCTCCTCAAGATATCAGTATTGAGTCAGGAAAGGTCCTGACTGTAGCCTGTGCTTTCACTGGAGACCCAACCCCTTGCACAGAATGGTCACATTCAGGGAAGACACTGCCCAGCAAGGAGGAGAGTGGACGATTGCAGATTGAGACTTCTCAAGATGTCACCACTCTTGTTATCAGTGGAGTGAAAGAGACTGATGCTGGTGCATACACCTTAAAGCTTTTTAACGAGTTTGGTTTTGATACCACTACTGTCAATGTCAGGATTcgatcaatgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattatataatagcaATACAATCATCACCCCATTTCCCTCATTcaaatcctttttatttatagaatgagaaaaaaatactgttcttGATAAAGACCTGAATTTCTGTTCTTGTAAATatgaactttttctttttttaaccaaactTGACATTCATTTATGCCAAACTAGACTAAAGTCTAAAGTTGTTATAAAATGTGCCATATTGGATAATTATGATCAGAAGTTCAGCACCATTTTGTGACATGTACATAATGTATATAGCCGAATTTACCGGTTATGGAAAATGTATGAATTGTTATTTAtgacaatattaacaaatgaaacaaaaggaACTAAATGTTTAACAGGAGAAAGTTTCACATGGAACGAATACCCTGTTAAACCTGAAACGAAACGAAACTATGTGCCTCAACAAAAAGTTGAAGTCTTAAGATTGCCTCAACAGGTAGAGAGGCTCCCTGTTGAAGTTAACTAAAATCAGAGAGACAAAGATATGCACTGCACATTTGTGCGTGCAGTAAAGCAGTATACAAGAATTTATGATTTGAACATAAGACCTTGAGTGCTGTTTGCATTACCCTCATGTAAGCAGGATGACTAGGCCTTGTGTTCAGACTGATTAAGTCATACCACCATTTTAATGACAAGCTCAATGTGCGAGCGGCCTGCacaatgagtaaatgatgatgttAGTGCACAGTTTCTGGCAATGGACTGTTTGAATTTTGATTTTATGAAAGTAACATCACCTGGCCATTCATTGTAAAATCAATTCAAGTGCTTCTTTGCAGAAGCTGTGCCAACTCTTGGAGGATTGCTAagttatattttgtgtgtttgtgtgtgtgctagcATTAGAATCTCACTTTGTCAGCAGCCAGGGTATCCATCATGTAACCACAGAGACTTCATGTGCtgtgcaaagaaaagaaaaatacatggaTGTAATACCCTGCACATTGATTTATTAGAACTAATTTATGTAGGTTTACCCATATATTCAGCCTCCTTGAGTTTTATGAATTACTGATTTAATAAAGCATGTTTTCAGCACCATaaaa

Function

GO:

id name namespace
GO:0014866 skeletal myofibril assembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106577 lncRNA downstream 21696 20378652 ~ 20389699 (-) True G71924
TU106560 lncRNA downstream 108959 20297199 ~ 20302436 (-) False LOC122351563
XR_006251770.1 lncRNA downstream 108967 20296930 ~ 20302428 (-) True LOC122351563
TU106568 lncRNA downstream 193348 20215420 ~ 20218047 (-) True G71919
TU106551 lncRNA downstream 242791 20163123 ~ 20168604 (-) True G71912
XR_006251769.1 lncRNA upstream 17007 20434116 ~ 20434969 (-) True LOC122351562
TU106617 lncRNA upstream 87159 20504268 ~ 20508659 (-) True G71940
TU106618 lncRNA upstream 87217 20504326 ~ 20508702 (-) False G71940
XR_006251768.1 lncRNA upstream 184875 20601984 ~ 20602557 (-) True LOC122351561
TU106557 lncRNA upstream 195780 20612889 ~ 20630423 (-) False G71912
XM_043248706.1 mRNA downstream 7696 20401384 ~ 20403699 (-) True LOC122351553
XM_043248701.1 mRNA downstream 116017 20271220 ~ 20295378 (-) False tfpia
XM_043248699.1 mRNA downstream 116017 20271220 ~ 20295378 (-) True tfpia
XM_043248702.1 mRNA downstream 116017 20272793 ~ 20295378 (-) False tfpia
XM_043248700.1 mRNA downstream 116019 20271220 ~ 20295376 (-) False tfpia
XM_043249003.1 mRNA upstream 763 20417872 ~ 20421682 (-) True LOC122351724
XM_043248703.1 mRNA upstream 4573 20421682 ~ 20423199 (-) True LOC122351551
XM_043249004.1 mRNA upstream 5804 20422913 ~ 20426727 (-) True LOC122351725
XM_043249005.1 mRNA upstream 9618 20426727 ~ 20428717 (-) True LOC122351726
XM_043248704.1 mRNA upstream 18636 20435745 ~ 20436901 (-) True LOC122351552
XR_006251780.1 other downstream 518080 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 606796 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 689658 19720498 ~ 19721737 (-) False ankar
XR_006251863.1 other downstream 1841513 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 3155904 17235872 ~ 17255491 (-) True G71118
TU106614 other upstream 72055 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 72055 20489164 ~ 20503890 (-) True G71938
TU107092 other upstream 1292179 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 1754354 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 1882063 22299172 ~ 22307013 (-) False LOC122351746

Expression Profile