RNA id: XM_043249007.1


Basic Information

Item Value
RNA id XM_043249007.1
length 2158
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC122351730
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20747875 ~ 20750613 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAAAACATAACTGGAATAACAACTGAAAACATCAAAGTCATCATTCTTTcCAAACCTGATGAACCTCAAGGACCCATACGATTTGATGATGTTGATGCAACATCAGTCACAATAAGCTGGGATCCACCTATGAGAGATGGTGGTGCACCAATTAGCAACTATGTGGTTGAACAACGTGATGCCCATCGCCCAGGATGGGTGCCTGTGTCGGAATCAGTTTCTAGACCAATATTCAAATTTGACAGATTGACAGAGGGCGATGAATATGTGTTCCGTGTTGCAGCAACCAATCGCTATGGCACTGGGGATTACTTACAGTCAGAAATCGTAATGTGCAAGAGCTccaaatCCATTCCTGGGCCACCTGGAAGACCCATTGTATTTGATGTATCACGTGATGGCATGACTGTTGCATGGGAACCACCAGATGAGGATGGAGGCTTAGAGGTGTCCGGCTACATTATTGAACGCAAGGAGGTCAGGTCAGATAGATGGATCCGTGCTAATAAAAATCCAGTGACAATGACAAGATACAGGTCCACTGACTTAATTGAAGGCCTGGAATATGAACACAGAGTGACAGCCATTAATGCTCGTGGTGTCGGCAAACCTAGCCTTCTTTCTAAACCAGCAGTAGCAACTGATCCTGTTGATCCACCTGGTTCACCTCAAAACCCACGAGTCACAGATACCACAAAATCTTCTGTGTCTTTGGCCTGGAGTCCCCCAGATGAGGAGGGTGGTGCTAAGGTTACAGGCTATCTAATTGAGATGCAAAAGGTTGGTTCAGTAACCTGGATGAAGTGCAACGCTACACCTTCACTGATCTGTGAATATACTTTGACACGAATGCCACAAGGAGAAGAATTCAAATTCCGTATTATGGCTTGCAATGCGGGTGGACCAGGAGAACCAGCTGAAGTACCAGGAGTTGTGACTATAACAGAGATGCTTGATCCTCCAAGTTATGATCTTGAAGCAAAATACAAGGATGTCCTTGTAGTCAGATCCAGAGGAGTAATCAGACTTTCAGTGCCCATCAAAGGCAAACCTACTCCTACCTGCAAATGGACCAAGGATGGATCAGAGGTTACCAACCGTGCAATGATTGCCTCCAGTGAAGATGTATCAGAGCTTGTAATCAAGCTAGCTGAAAGGTCTGATTCTGGTCTTTACCATCTCCATCTGGAAAACAAGTGTGGCAAAAAGATGCTTCCAATAAAGGTCAAAGTTATTGGCCGCCCATCTGCACCTGAAGGCCCTCTTAGATTTGATGATATACAAGCACATTCTGTAAAAGTTAGCTGGAAACCACCAACAGAAGATGGTGGTTCCGAAATTGTTGGCTACATTGTGGAAAGACGTGAAGAAACAAAAGCAGCTTGGTACACGGTTGATTCGCGAGTGGTTGACACATCCCTTGTAGTTAAGGGACTACAAGAAAATGCAGAATATCACTTTAAGGTGACAGCAGAGAACCAGTTTGGAATAAGCAACTCCCTGAAATCAGAGACAACTATTGTACCAAAGACTCCTATTTGTGTCCCAGAGGCTTCAGGTACTCCACCAGAAATTATGGATGTTACTAAGAATTCTGCGGCTTTGGCTTGGACAAAACCTAAAGATGATGGTGGATCTTGCATTACTGGTTACTATATTGAGTACAAAGAAGTGTCATCTGATAAGTGGATTCGTCATGAGACAAAGATCACCTCAACGATGTACACTCTTAGTCAACTCACTACTGATTCCGAATATCAGTTCCGTGTTATTGCTGTGAATGACATTGGAGCTAGTGAACCAGGACCTGCATCAGATTCAGTAATATGCAAAGATCCATTTGATAAACCAAGCCAACCTGGAGAAATTGACACTATGACTGTTACCAAAGACTATATTACAATTAACTGGGAGGCTCCAGCATGTGACGGTGGCAAACCAGTCCTTGGCTACTGGATTGAATACCGAAAGTCTGGAGAGAGTGCTTGGAAGAAATGCAATAAGGAGCGCACAAAGGACAAACAGTACACTCAGGGTGGTTTACAAGAGGCAACTGAATATGAATTCAGAGTATTTGCAGAAAATGAAACCGAATTAGCAGACCACGCAGAACAGCAACTGGCATCAAAACTAAACTGGGTGGTAAGTATGGTTTGA

Function

GO:

id name namespace
GO:0014866 skeletal myofibril assembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251771.1 lncRNA downstream 110453 20632693 ~ 20637422 (-) True LOC122351564
TU106557 lncRNA downstream 117452 20612889 ~ 20630423 (-) False G71912
XR_006251768.1 lncRNA downstream 145318 20601984 ~ 20602557 (-) True LOC122351561
TU106618 lncRNA downstream 239173 20504326 ~ 20508702 (-) False G71940
TU106617 lncRNA downstream 239216 20504268 ~ 20508659 (-) True G71940
TU106635 lncRNA upstream 7005 20757618 ~ 20758206 (-) True G71957
TU106663 lncRNA upstream 442452 21193065 ~ 21193278 (-) True G71981
TU106668 lncRNA upstream 455602 21206215 ~ 21206762 (-) True G71984
XR_006251774.1 lncRNA upstream 482573 21233186 ~ 21245762 (-) True LOC122351567
TU106671 lncRNA upstream 483966 21234579 ~ 21245785 (-) False LOC122351567
XM_043248669.1 mRNA downstream 1005 20737023 ~ 20746870 (-) True LOC122351538
XM_043248707.1 mRNA downstream 16098 20729340 ~ 20731777 (-) True LOC122351555
XM_043248671.1 mRNA downstream 29334 20694560 ~ 20718541 (-) False col5a2a
XM_043248670.1 mRNA downstream 29334 20694560 ~ 20718541 (-) True col5a2a
XM_043248677.1 mRNA downstream 270142 20453526 ~ 20477733 (-) False LOC122351543
XM_043249008.1 mRNA upstream 39 20750652 ~ 20751262 (-) True LOC122351731
XM_043248709.1 mRNA upstream 656 20751269 ~ 20752980 (-) True LOC122351558
XM_043249009.1 mRNA upstream 5283 20755896 ~ 20757113 (-) True LOC122351732
XM_043249010.1 mRNA upstream 9433 20760046 ~ 20761027 (-) True LOC122351733
XM_043249011.1 mRNA upstream 19132 20769745 ~ 20771153 (-) True LOC122351738
TU106614 other downstream 243985 20489164 ~ 20503890 (-) False G71938
TU106615 other downstream 243985 20489164 ~ 20503890 (-) True G71938
XR_006251780.1 other downstream 854560 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 943276 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 1026138 19720498 ~ 19721737 (-) False ankar
TU107092 other upstream 958675 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 1420850 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 1548559 22299172 ~ 22307013 (-) False LOC122351746
TU107329 other upstream 1708783 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 3179594 23930207 ~ 23931329 (-) True G72930

Expression Profile