RNA id: XM_043249014.1



Basic Information


Item Value
RNA id XM_043249014.1
length 856
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC122351741
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 21168939 ~ 21170775 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGCTTAATTTTTCAaaagaagCACAAGCCAGTACGGAAGATAGTAACAAGTCATCCAACGACACGTCAAAGGTCGCTTCTCCACCCAGACCAGAAGATGCCTCGGCTGCCTACGAGAGCGATTTCGAGAGCGAGATCCCGTCTGAGACACCACGGAGTGTCAGTGAGATCTCTGAACATCTcacagagaaagacaaagacgcCTCACTGATCAGTGAGGCCCAGCACGGCTCATACAAATCCCAGGATGATGACCACGACCTTACTTTAACACAATCATCATCAAGTTGCCGCTCAGACTCTTGTTCGAGGTCGAGCTCATCCAATGCAACGGTCACACATGACCCCAGTCCTGACCGTCACGTGAAGGAGGCTGCAGTACAGACTCAGACAGATGGACTTACTTACACATGGTCTTCTGGCATGGCTGCGGTCGGTCCGTCGGTGGGCATGACGTACGTGGACCCCACCCCAATAGCCAGTCATACAGTCAGCGCTGAAGCCATTGAGAGCCTGACGGCATACAGTCCTGCCGTTTGCGCACTCAACGACATGTTGAGGCAGCAGCTGAACCTCACTAGAGCCTTCATCGACTCCACCAGACATCACTACACTTCGGTGATCGAGTCACTGGGACCTGCTGATTACAAATACACCACATTAAAGGATACCAAAGAGtttatTCGCAATCACAGACCACCCAAACTGAGTATTGAAGACGCTTTAGAGGAAGTTCTACAGGAAATGAGAGACTATCACTGCAGCTGAATAAACATGATCAGTGTTTTGGATGCATCATCCATAGATCATCGTTTCAATAACGTGCCTAAAtaaacttctttttaaaaaaaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU106635 lncRNA downstream 410733 20757618 ~ 20758206 (-) True G71957
XR_006251771.1 lncRNA downstream 531517 20632693 ~ 20637422 (-) True LOC122351564
TU106557 lncRNA downstream 538516 20612889 ~ 20630423 (-) False G71912
XR_006251768.1 lncRNA downstream 566382 20601984 ~ 20602557 (-) True LOC122351561
TU106618 lncRNA downstream 660237 20504326 ~ 20508702 (-) False G71940
TU106663 lncRNA upstream 22290 21193065 ~ 21193278 (-) True G71981
TU106668 lncRNA upstream 35440 21206215 ~ 21206762 (-) True G71984
XR_006251774.1 lncRNA upstream 62411 21233186 ~ 21245762 (-) True LOC122351567
TU106671 lncRNA upstream 63804 21234579 ~ 21245785 (-) False LOC122351567
TU106713 lncRNA upstream 258353 21429128 ~ 21430341 (-) True G72024
XM_043249011.1 mRNA downstream 397786 20769745 ~ 20771153 (-) True LOC122351738
XM_043249010.1 mRNA downstream 407912 20760046 ~ 20761027 (-) True LOC122351733
XM_043249009.1 mRNA downstream 411826 20755896 ~ 20757113 (-) True LOC122351732
XM_043248709.1 mRNA downstream 415959 20751269 ~ 20752980 (-) True LOC122351558
XM_043249008.1 mRNA downstream 417677 20750652 ~ 20751262 (-) True LOC122351731
XM_043248710.1 mRNA upstream 573268 21744043 ~ 21896047 (-) True LOC122351560
XM_043249016.1 mRNA upstream 726410 21897185 ~ 21907713 (-) True LOC122351744
XM_043248643.1 mRNA upstream 1000688 22171463 ~ 22223666 (-) True cerkl
XM_043248644.1 mRNA upstream 1054783 22225558 ~ 22228499 (-) True neurod1
XM_043249520.1 mRNA upstream 1170633 22341408 ~ 22398653 (-) True LOC122352034
TU106614 other downstream 665049 20489164 ~ 20503890 (-) False G71938
TU106615 other downstream 665049 20489164 ~ 20503890 (-) True G71938
XR_006251780.1 other downstream 1275624 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 1364340 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 1447202 19720498 ~ 19721737 (-) False ankar
TU107092 other upstream 538513 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 1000688 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 1128397 22299172 ~ 22307013 (-) False LOC122351746
TU107329 other upstream 1288621 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 2759432 23930207 ~ 23931329 (-) True G72930

Expression Profile