RNA id: XM_043249016.1


Basic Information

Item Value
RNA id XM_043249016.1
length 562
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC122351744
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 21897185 ~ 21907713 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTCCGGCTCCATTTCAACTGGATTTTTAACACTCCTAACCACCCCAGATCAGGACAGGACCGCGTCTAAGGTGGAAAATGTCCAGTGAAAGACAACGGTCAGATGATGAAAGTCCCAGCACCAGCAGCGGCAGTTCCGATGCGGATCAGAGAGATCCTCCGGTGCAGAACCAGAAGAACAAGAGGAGCGAAAACAACCCACGCCTCCCACAACAGCAGAAGAAATCCACCAAACTGTCCAGCAAAACAACAGCCAAATTATCCTCCAGCGCGAAGAGAATCCAGAAAGAGCTTGCAGAAATCACTCTGGATCCTCCACCCAACTGCAGCATGACTCAAGGGAAAAATGGTTCTAGCGATTCACTTAAAGACATTCAAATGCTTCCCCCACGTTCAGAGAATGTCCTGCAGACAGTCTCGCAGTCATCACAAGGCACCCGTCTTTCACACGAAACAGAACAGAAACGCTCGGGGATGGTAGGGCAGTCATTGCCTTCCGGCGACTGGAACTGCAGACATTACTCCCATTGTGTCAGCTCTCAAAGAGGTGGAATGGTCTGA

Function

GO:

id name namespace
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107110 lncRNA downstream 159663 21736441 ~ 21737522 (-) True G72377
TU107104 lncRNA downstream 164189 21732308 ~ 21732996 (-) True G72372
TU106979 lncRNA downstream 281501 21607794 ~ 21615684 (-) False G72260
TU107247 lncRNA upstream 34854 21942567 ~ 21942990 (-) True G72479
TU107240 lncRNA upstream 88222 21995935 ~ 22055031 (-) False G72472
TU107238 lncRNA upstream 123424 22031137 ~ 22055031 (-) False G72472
TU107239 lncRNA upstream 146301 22054014 ~ 22056835 (-) True G72472
TU107261 lncRNA upstream 192313 22100026 ~ 22100238 (-) True G72493
XM_043248710.1 mRNA downstream 1138 21744043 ~ 21896047 (-) True LOC122351560
XM_043249014.1 mRNA downstream 726410 21168939 ~ 21170775 (-) True LOC122351741
XM_043249011.1 mRNA downstream 1126032 20769745 ~ 20771153 (-) True LOC122351738
XM_043249010.1 mRNA downstream 1136158 20760046 ~ 20761027 (-) True LOC122351733
XM_043249009.1 mRNA downstream 1140072 20755896 ~ 20757113 (-) True LOC122351732
XM_043248643.1 mRNA upstream 263750 22171463 ~ 22223666 (-) True cerkl
XM_043248644.1 mRNA upstream 317845 22225558 ~ 22228499 (-) True neurod1
XM_043249520.1 mRNA upstream 433695 22341408 ~ 22398653 (-) True LOC122352034
XM_043249018.1 mRNA upstream 538680 22446393 ~ 22510524 (-) True LOC122351746
XM_043249180.1 mRNA upstream 574513 22482226 ~ 22484709 (-) True LOC122351832
TU107092 other downstream 170365 21709288 ~ 21726820 (-) True G72363
TU106614 other downstream 1393295 20489164 ~ 20503890 (-) False G71938
TU106615 other downstream 1393295 20489164 ~ 20503890 (-) True G71938
XR_006251780.1 other downstream 2003870 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 2092586 19796257 ~ 19804599 (-) False glsb
XR_006251764.1 other upstream 263750 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 391459 22299172 ~ 22307013 (-) False LOC122351746
TU107329 other upstream 551683 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 2022494 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 2048506 23956219 ~ 23960325 (-) False grb14

Expression Profile