RNA id: XM_043249030.1


Basic Information

Item Value
RNA id XM_043249030.1
length 3214
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC122351760
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22611358 ~ 22615781 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGCAGGATCCTGTATAAAAGAAGGAGATGACGTTTTTGCCACTTTTACAGCGTCTGCATGATGAAAATATGCACAATGAATGAATACCTGCattggcaaaaataaataaaattgtttccaGTCAAAATACCTTAAAATATCAGTACTGAAATATcaagatgcatttttaacataataacaTTTACTTCGTTTAGGTAGctagttttgtgtttaattttttcctgAACAGAacagacatttattttgaaggtATTTgcctaaataatataaactctATAAAATATTAACGTTGCTGTCTTCACACTGTGACTAGGTGGATGTAGGCCTGTATAGTGTTCCTTCATGGCGCTTCATTGGgtagcaaaacattttattatcatgCAGCCTTAAAAGTGCAAATCAGAGAAGGTCGTGCTGCATAGTCTACTATTGCAAATCTTCATCTGCCATTGGATGCCCCACCCAATTATGTAAATCTATTGTATGGACTACGGATGTcaggttttacaggttttacagCTTTCAAAGCATGGGTACATAAAGGAGCCTCTTTTAGGGCATAGTGCATTACCTCTTATCTCCTGTGCGAGCTTTTGTGCGATAGCTTTTTTCTCAcaactacatttttacattttcaggttttttatCTCTAAACATCTCAACAAAGCAGCAAGAATGAGCTGTTCTGGACATGAAGATGCTAAAGTTGTAATTGTAGGCTCGGGTTTCGCAGGGTTGGCCGCTGCAGCTACTTTGGTGAAGGCAGGATTTGAAAATGTCTTGGTTCTTGAGGCGAAGGAAAGAATTGGAGGTCGAGTGCACACCACTAAACCCTTCACCGAGAGCATCATTGAAGTTGGAGCGAACTGGATCCACGGACAGACAGGAAACCCCCTGTACAAGATTGCAAAAGAAGAGAATCTGCTATCAAAGGGAACCTCAGCATCCACTTCTGAAACCTCTGATgattactttttcaaagaaGATGGTAAGAAGGTACCCTCAAAGCTTGCAGATCAGGTGTGTTCGCAGTTCACCACGCTCACCGATAAAGCATATGATGATGAACTTGAGCCCAAGTACCAGAAACTAACTCTTGGTGCTTATTTGGATGATGCCTTTGGTCAATCTCCTCTAGGGGCGAAACAAGATGGCCAGCAAGTTTTTGAATGGTGCAAGAGGAACGAATGCACAGACGAGGCTTGCTCTAGTCTCTATGAGATGTCTGCATCTGAGATTAGCAATTACACTACTTTGGATGGAGACTTTTATACCACTTTGGGACCCGGTGGCTATCGCGCAATCTTAGATGTCCTCATGAGAGATCTGCGTTCAGGAACCATCCAGTGTAATTCACCTGTCAAGAGCATCCACTGGGATTTGGTCAAAAAAGGACATTGTGAAGACCAAAAGCATCCTGTTCAGGTTGTTTGTGAAAATGGAAAGAGCTTTGACGCAGACCATGTGATTGTCACCGTTTCTCTGGGGGTTCTCAAAGACAAAGCCTCAACCATGTTTGAACCATCCTTACCGCCAACAAAGCTGTCTGCGATTAAGAATCTCGGTTTTGGGATAGTAGATaaaattttcttgttttttgagAAGAAATTCTGGCCAGATGATTGTGCCGGGGTGCAGATGGTGTGGAAAGAGGGGCCAGAGAATAAAGACGTTTATAAGTCTCTGTCTAATGGAGATGCCTGGAAGAAGACGTGGTACAAGAAGATCACTGGTTTTGATGCAGAGGGCCGTCATCCCACGGCTCTGTGTGGCTGGATCACAGGTAGAGAAGCACTGTATATGGAGAATCTTCCGGATAGTGAAATCAAAGATACCTGTTTGAGGTTGCTCAGGTCTTTCACAGGCTGGTCAGTGCCAGAGGTCTCAAAGATGCTGATCTCCAGATGGGGTTCTGACTCTCACGTCCATGGATCCTACACATTTGTTCCTGATGGTGTTGATGGAGTAAAAGCACAGAAGGCATTAGCATCACCTCTTCCACCTAAAGATGAATCCCAAGGGAGGATGgATCTTCAGGTGTTGTTTGCTGGTGAAGCTACACATGACAGCTTCTACACTACGACCCACGGAGCGTATCTCTCAGGAGTCAGAGAAGCAAACCGACTCGTAAACTATTACACTGATTGAAGTCCcaaagaaaacaacatacaCCTTGGTTCTGAAGGATCAAAGATTCTTAAAGGCAGCCTGTGTATGTTTTCCTTCAAGCAAGCAACCATACATTGGTGTAgtgttttactttctttctcttaTATTCATTGATTcatgctttctttctttattcatttacaataaTTCGTCATTTAAtcatataatcatttataataatcattcaTATATCTACTTTATTGATTCTTTAATTGATTggtcattatattataattgtgtAGTCTTACATTGCAGTCTTACACTTAGTCTAACTATGTGTTTAAAGGGTGGTTGGTTTGAGATATAAAGAAATGGAGTTTATGGAAACTCAGGGTTTATGGGATGttgttttgatataaaaatacttgCCGGATTAGTGCTGGTCAGACGAAGTCTGAGCATTGAAACATATGCAACTAAGCCTATTCAATGAGCTCCTTTTCACTTCATCTCCTGCTTCTGATCTTCTCTGTCTTTTCCCACTGTCAACGTCTTGgctgatgacagaatattaataaacttttgGGTATCAGACAAGACTTCCTGTTTTGGGTAGGCTATTAAGACTGCTGACAGGTTGTTCTGTTACCAGACAGAACTGATATTTTCTTCCGAGGCTGGATCTTAATTGGCATGGAGGCATGATCTAACAGTTTCATAAAGataacattttatgaatgtataaaatTGCATGGACTGACCCTCACACAGGGTCATCGCCAAAAAATCCTATTTGGCATGGATATAGATGTTCCCCTagtggctttaagaaaagagctaGAGCAGTGAAAATGACCGTTTTCATTATCAGGGCCATCCTTAATTTCCATcaataattaagaatttccaATCAACGTAAAATGATACAAAACTGTCTGGTAGAGATGCGTGTCTAAATCGCCCTAATGCATGGTGAGAAAGAGAGTTTGAGTGGATAAAAACTCTATAAGGACCACAGCTGGAGAATTGCAGAAAACAATTGAGTCTCGGGGgcagaaaaccttaaaaataactGTCAAACAGCACCTATGTCATGACATAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251847.1 lncRNA downstream 23107 22585744 ~ 22588251 (-) True LOC122352087
TU107400 lncRNA downstream 30586 22579803 ~ 22580772 (-) True G72583
TU107338 lncRNA downstream 152600 22311078 ~ 22458758 (-) True G72535
TU107333 lncRNA downstream 165863 22297050 ~ 22445495 (-) False LOC122351746
TU107436 lncRNA upstream 36721 22652502 ~ 22653575 (-) True G72605
TU107432 lncRNA upstream 42536 22658317 ~ 22658828 (-) True G72603
TU107440 lncRNA upstream 51116 22666897 ~ 22667111 (-) True G72608
TU107450 lncRNA upstream 84948 22700729 ~ 22701019 (-) True G72615
TU107487 lncRNA upstream 212317 22828098 ~ 22891619 (-) True G72646
XM_043249029.1 mRNA downstream 1289 22597828 ~ 22610069 (-) True dnajc10
XM_043249423.1 mRNA downstream 69648 22537975 ~ 22541710 (-) True dusp19a
XM_043249018.1 mRNA downstream 100834 22446393 ~ 22510524 (-) True LOC122351746
XM_043249180.1 mRNA downstream 126649 22482226 ~ 22484709 (-) True LOC122351832
XM_043249520.1 mRNA downstream 212705 22341408 ~ 22398653 (-) True LOC122352034
XM_043249032.1 mRNA upstream 1083 22616864 ~ 22620788 (-) False LOC122351761
XM_043249031.1 mRNA upstream 1083 22616864 ~ 22620788 (-) True LOC122351761
XM_043249493.1 mRNA upstream 6277 22622058 ~ 22635997 (-) False vil1
XM_043249492.1 mRNA upstream 6277 22622058 ~ 22633986 (-) True vil1
XM_043249090.1 mRNA upstream 21114 22636895 ~ 22645747 (-) True itgb2
TU107329 other downstream 100051 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 304345 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 387691 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 884538 21709288 ~ 21726820 (-) True G72363
TU106615 other downstream 2107468 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 1314426 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 1340438 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 1604741 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 1615454 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 1655674 24271455 ~ 24280708 (-) True G72978

Expression Profile