RNA id: XM_043249031.1


Basic Information

Item Value
RNA id XM_043249031.1
length 2761
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC122351761
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22616864 ~ 22620788 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaatcattatGCAGCCGTATAAGTGCAAACGAGAGAACGATATGCTGTGTTTCTGTTGCTCAGGAAAATATTTCTGACACGTCTGTGTATCTGACAAGTGTTGCATATAAGTCATTTTATCACCTTATTTGCGGTAGAAGTAACAGTTTGAGCGTCACCGTTACTAGGAACTGAACGACGTTTTCGCTTTCACTTTCATCCCCGATTGTAACGGGCCACTCCCGCCGGCCGGTCGCAGCAGAAAGTCGAACGCGCCTAATATCTAACTTAATCTGCCATTGGATGTACCATGACCGCcgtatataattatatagcCTGCTGCATGGATTACAAAGGTCAGGTTTTACAGGTTGCTTAAAGCACCAGCACGTCAAGGAGTCTGTTTTAGTACATAGTGCGCTGCTCGCTTATCACCTATGCAAGGTTTCGTGCGATaggttgctgtttttttcttacaactgcatttatacatttttagcttttctcTAAACAGTTCAACAAAGCAGCAATCATGAACTCTTGTTCTGGGCGAGAAAATGCCAAAGTTGTAATTGTAGGCTCGGGTTTCGCAGGGTTGGCCGCTGCGGCTACGTTGGTGAAGGCAGGATTCGTAAATGTCTTGGTTCTTGAGGCGAAGGAAAGAATTGGAGGTCGAGTGCACACCACTAAACCCTTCATCGAGAACATCATTGAAGTTGGAGCGAATTGGATCCATGGCAGGAAAGGAAACCCCCTGTACAAGATTTCAGCGCGGGAGAACCTGCTATGCGAGGGACCTTCTGCTAACAAAAACATGTGCCTGCCCCGTTCTATAACCTCTcaagattactttttcaaagaaGATGGGAAGCTGGTGTCCACAAAGCTTGTAGATCAGGTGTGTTTGCACTTCAACAAGCTCACCGACAAAGCTTTTGATGACGAACTtaaccacaaacacaaaaaactaaGTCTGGGTGCTTATCTAGATGATGCCATTAGTGAATTTTCTCCAGCGATGACAGAAGATGGCCAACTGGTTTTTGAATGGTGCAAGAGGATTGAATGCACAGACGAGGCTTGCTCTAGTCTCTATGAAGTGTCTGCATCTCAGATTAGCTATTACACTGCCTTAGAGGGAGGATTCTTTAACACTTTGGGACCCGGTGGCTACCAAGCAATCTTAGATGTCCTCATGAGAGATATACCTGCAGGAACCATCCAGTGTAGTTCACCTGTCAAGAGCATCCGATGGGATTTAGTCAGGAAAGGTCATTGTGAAGACCAAAGGCATCCTGTTCAGGTTGTTTGTGAAAATGGAAAAAGCTTTGACGCAGACCATGTGATTGTCACAGTTTCTCTGGGGGTTCTCAAAGACAAAGCCTCAACCATGTTTGAACCATCCTTACCGCCAACAAAGCTGTCTGCGATTAAGAATCTCGGTTTTGGGATAGTAGATaaaattttcttgttttttgagAAGAAATTCTGGCCAGATGATTGTGCCGGGGTGCAGATGGTGTGGAAAGAGGGGCCAGAGAATAAAGACGTTTATGAATCTCTATCTGAAGGAGACACCTGGAAAAAGACGTGGTTCAAGAAGATCACCGGTTTTGATACAGTGGCCCGTCATCCCACGGCTCTGTGTGGCTGGATCACAGGTAGAGAAGCACTGTATATGGAGAATCTTCTGGATAGTGAAGTAGGAGATATCTGTGCAAGGTTGCTCAGGTCTTTCACAGGCTGGTCAGTGCCAGAGGTCTCAAAGACGCTGATCTCCAGATGGGGTTCTGACTCTCACGTCCGTGGATCCTACACATTTGTTCCTGATGGTGTTGATGGAGTAAAAGCACACAAGGCATTAGCATCACCTCTTCCACCTAAACAGAAATGCAGAGGGAAGAAGCACCTTCAGGTGTTGTTTGCTGGTGAAGCTACACACGTGAACTTCTACACCACGACCCACGGAGCGTATCTCTCAGGGGTCAGAGAAGCAGAACGACTGAAAAGCTTTTACACCAATTAAGCATACAGTCCCAAAGAGAGGAAAACATACACTTTGTTTCATAGTTATAACATttaagaattttacattttgtaattgcTCACACCCTAGTCTTACACAAAACTCATTTTATACCCATAGGTCGTTTACAGCTGCCTAGTAAACATCATTAACTGTGAGCGTTTAGCTACGTCAAGCTGGTCATGGTACGATTCATATCTCTGTCTTGTTAATTGTTAAACATCTCTGTGGTGTGCGTGTAGTGCCGACGGAGAAATATTCTTTCCCAATCTGCAAGGAAAGTTAaatcatattttcttaaaatgaaatacatttgcatacttttaagTAAATTAGAGCAGACGAGTTTTTAATCTGTGATACAGTGCCCTCAGGTGGCATGCAGCGTCACACATAACAATGTCATATTTATAGCGTTCACACTGTAATGACACAGAGCCTTGGTTTAAATGAATTGTTCAGCCGGGAATATTAACGTTGCTGTCTTTACACTGTGACTAGGTGGATGTAGGCCTGTATAGTGTTCCTTCATCTCGCTTCATTGGgtagcaaaacattttattatcatgCAGCCTTGAGAGAAGGTCGTGCTGCATAGTCTACTATTGCAAATCTTCATCTGCCATTGGATGCCCCACccaattatgtaaatatattgtatggaCCACAGAGGTCAGGTTTTACAGCTTTCAAAGCATGGGTACATAAAGggtacatatttgtatttgttcatttaaattaataaaactctAACA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K13367 FMS1; polyamine oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251847.1 lncRNA downstream 28613 22585744 ~ 22588251 (-) True LOC122352087
TU107400 lncRNA downstream 36092 22579803 ~ 22580772 (-) True G72583
TU107338 lncRNA downstream 158106 22311078 ~ 22458758 (-) True G72535
TU107333 lncRNA downstream 171369 22297050 ~ 22445495 (-) False LOC122351746
TU107436 lncRNA upstream 31714 22652502 ~ 22653575 (-) True G72605
TU107432 lncRNA upstream 37529 22658317 ~ 22658828 (-) True G72603
TU107440 lncRNA upstream 46109 22666897 ~ 22667111 (-) True G72608
TU107450 lncRNA upstream 79941 22700729 ~ 22701019 (-) True G72615
TU107487 lncRNA upstream 207310 22828098 ~ 22891619 (-) True G72646
XM_043249030.1 mRNA downstream 1083 22611358 ~ 22615781 (-) True LOC122351760
XM_043249029.1 mRNA downstream 6795 22597828 ~ 22610069 (-) True dnajc10
XM_043249423.1 mRNA downstream 75154 22537975 ~ 22541710 (-) True dusp19a
XM_043249018.1 mRNA downstream 106340 22446393 ~ 22510524 (-) True LOC122351746
XM_043249493.1 mRNA upstream 1270 22622058 ~ 22635997 (-) False vil1
XM_043249492.1 mRNA upstream 1270 22622058 ~ 22633986 (-) True vil1
XM_043249090.1 mRNA upstream 16107 22636895 ~ 22645747 (-) True itgb2
XM_043248246.1 mRNA upstream 281660 22902448 ~ 22906312 (-) True agr1
XM_043249636.1 mRNA upstream 385050 23005838 ~ 23244247 (-) True hdac4
TU107329 other downstream 105557 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 309851 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 393197 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 890044 21709288 ~ 21726820 (-) True G72363
TU106615 other downstream 2112974 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 1309419 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 1335431 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 1599734 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 1610447 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 1650667 24271455 ~ 24280708 (-) True G72978

Expression Profile