RNA id: XM_043249034.1


Basic Information

Item Value
RNA id XM_043249034.1
length 2569
RNA type mRNA
GC content 0.41
exon number 11
gene id pla1a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14595394 ~ 14602797 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTGGAAagatcatttgtttttcattgtagTCAAAACCCAGAAGAATTATCCACTAGCTACTGCTATCACAGGATGGAAACTGGGAATTAATACCTCTCATGCTGACATGGTTTATAACAACACACCAGGAATGAAAGGAATAACAATTCATATCACCTAATCGGATATTGAAGCATTTTTCTTGGAACCAGGCATTGTGTAACAGATTGTGGCTGGATATTAAGTGGATTCCAGACTTCTTAGGGTAACTATAGCTGAAGAACAGGagcaaaatgttttgaaaagttGCAGAATGAATTTGCACTCACTGAAGAATTCAACCAGCAGAAACATCTCACTCAGCTGATTTCATCATGTTGATCAACAAAGCCAAAGCTTGGAAATGGATCAAggcttttgtttatttgtcagtGTGCATCACCTCTGCTGTGGGTAATGAGGAAGCATCCCAAAAGTGTGCAGACTTCAACAACACAGCTTGGCTAGAATACAGACAGGGCTCCAAACTCCAGGTACAGTACCTTCTTCTTACACGAAAGAATGTAGACTGCGCCAGCCTCTTCACACAGGACTGCCTCAACCATACCCAGAAACACACCGCTTACTTCAATTCATCACTCCCCACTAAAGTCATTGTTCATGGATACAGGGCGCTGGGCAGTAAGCCTTCCTGGGTGAGTGGCTTAGCTCAGGCTCTACTGCGGGAAGAGGATGTGAATGTTCTGGTGGTGGACTGGGTCTATGGAGCCTCGTTTGCTTATAACCTGGTGGTAGAGAACTACAAAGAGGTGGCAGTGCAGATATCAGTGCTTATCAATCAGCTTACGAAATATGGAAGTAAGCTGGaatcttttcatttcattggtGTGAGTCTTGGAGCACACGTGTCTGGATTCGTAGGGACCCTGTTTGAAGGCAAACTGGGTCGAATTACagGTCTGGACCCTGCAGGCCCAATGTTCAAGAGTGCTGACCCGTTTGACCGTCTGGATTCGTCTGATGCTTTGTTCGTTGAGGCCATACACACTGACTCTGACTACTTTGGTATATCCATTCCCGTCGGGCATGTGGACTTCTTTTTAAATGGTGGAATGGACCAAGCCGGTTGTGCACGCACAAAGTTTGCTTCAATGTATGGTTATGTGATTTGTGACCACATGAGGGCACTACATGTCTACATGAGCGCCCTGAACAGCTCGTGTTGGCTTATTGGTTTCCCCTGCTCCAGTTATGAGGAATTCCTGGCAGGAAAATGCGTCACCTGCAAGGGCCCCTTCAATGGCACATGCCCACAAATAGgCTTGTTAAAAAACAGTGGAATAACAGCTAATTCCCTGCCAAATCAAGAGAAGGTGTATCTCCTTACTACTGCTACGGCTCCTTATTGTGCTCATCACATCCTAGTGGAATTAAAGGTTTCCCCTTTAGACAAGACTGCTGATGTTCAGCTTACTCTGATCTCTGTTGGACACCCTGGCACTGAGCTGAAACTCAAactAAATACAGATGAAGTGGTGCACAAAAAAGTGGCTGCACACCCAGAGCAACTGTGTAAAATTGACTCAGTGCAGCTGAAAAACACAGGAGGACTATTCTACAGACAAGGAGATATTCATTTTGAGTATATCTGCATCTCTGAAGTGCCTCAAACAAGAGGGCTGGATCCATTATGTGTGAAGAACATTAATGTTGGGCGGGGAGTGCCATGGTCACATGACTTTGTACAGTTGTGCTAAATTAAAAGAACAACACAATCTACTTAAGAGAGCTTATACAAGTATTAAATTAGTGAGACTCAAGCGAAGGTCACACACTAACACTAGGCTTGGGAGGCATTAAAGCTTAgtgacaaagaaataaataggaTACAAGGGGACTGAAATGCTTAAACTCtgttagatatatttattaatatgatttttgtgcaCTGTTCCAGAGAGTGTTAGTGAGATATCAGAAGAATCAAATCAGTCATTTAACACTGAATAGTTAGTTTATGTATTGTGTATTGAAAGTACTGGTTTATTTccaataattacaatatttggAGTGGTGCAGAATTCAAGgtacatttcaatattttggCACTCTGATTAGCATCTCTAACTGCATTAGTGCCGGGGTGATATATATCGATTGATACATGAACATCACGTCAGTAAAGCCATTTCTTTGATTAGCAATATGTGTCCATCACCTATCCTACACAGAaccgtagatcactgacaagctactcCAGTGATTACTTGTCAATGATCTACGTACGGGTCTGGAGGtttaccgctaatcaaagaactggCTTACGAGATGCGCATTATATATATTGGCCAGCCCTAAACTGCATACTACATTGTTgatattaaaaattcaaatctgttaatttACAATTTGTGATGAACCTCAAGTCACATTTTGAACCCAGCAACAGTTGGCCccatgaaaatacattttcatcctATGGTCTGTGTACAGTCTCAAATCATGGTGCTGATGCATTTACTAACTTCCTATTATGATAACGCACacacttttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacta

Function

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13618 PLA1A; phosphatidylserine sn-1 acylhydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104140 lncRNA downstream 52 14594263 ~ 14595342 (-) True G70396
TU104139 lncRNA downstream 52 14594424 ~ 14595342 (-) False G70396
TU104132 lncRNA downstream 5119 14589858 ~ 14590275 (-) True G70393
TU104117 lncRNA downstream 32402 14477332 ~ 14562992 (-) True G70382
TU104075 lncRNA downstream 222720 14363039 ~ 14372674 (-) False LOC122351495
TU104213 lncRNA upstream 314003 14916800 ~ 14918840 (-) False G70438
TU104214 lncRNA upstream 314003 14916800 ~ 14918840 (-) True G70438
XR_006251854.1 lncRNA upstream 334327 14937124 ~ 14942863 (-) True LOC122352110
TU104296 lncRNA upstream 372615 14975412 ~ 14981853 (-) True G70494
TU104307 lncRNA upstream 410560 15013357 ~ 15273029 (-) False G70503
XM_043248415.1 mRNA downstream 9561 14579283 ~ 14585833 (-) False hcn5
XM_043248414.1 mRNA downstream 9561 14579283 ~ 14585833 (-) True hcn5
XM_043249443.1 mRNA downstream 17122 14574795 ~ 14578272 (-) True ska3
XM_043249444.1 mRNA downstream 17133 14574795 ~ 14578261 (-) False ska3
XM_043249441.1 mRNA downstream 22357 14569810 ~ 14573037 (-) True LOC122351989
XM_043249048.1 mRNA upstream 2022 14604819 ~ 14607004 (-) True hsd3b1
XM_043249047.1 mRNA upstream 5286 14608083 ~ 14613939 (-) False si:rp71-68n21.9
XM_043249046.1 mRNA upstream 5286 14608083 ~ 14613939 (-) True si:rp71-68n21.9
XM_043249049.1 mRNA upstream 11929 14614726 ~ 14620909 (-) False hao2
XM_043249050.1 mRNA upstream 11929 14614726 ~ 14619051 (-) False hao2
TU104031 other downstream 341618 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 655526 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 782067 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 1099749 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 700306 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 787052 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1168624 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2214343 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 2214343 16817140 ~ 16823775 (-) True G70986

Expression Profile