RNA id: XM_043249042.1


Basic Information

Item Value
RNA id XM_043249042.1
length 4300
RNA type mRNA
GC content 0.44
exon number 14
gene id pms1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19684890 ~ 19708970 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCATATCCGATACTCGAGCGAGTCTTCAAAACATGTGAAGTGCACTTGTGTTATGAATTTATTGGATAACTTCTAAcggattattgttttttttaatggtttttttttcgaAAAGGAGCAGACTATGAAGGCGCTTCCACCTGAAACCGTGCGTCTGCTGTGCAGCTCTCAGGTTATAACATCTGTCCTGAATGTTGTCAAAGAGCTGGTAGAAAATACACTTGATGCTGGTTCCTCAAGCCTTGAAGTCAAACTGGAGAATTATGGATTGGATCGCATTGAAGTCAGAGACAATGGTTCCGGAATCAAAGCCACTGATGTCCCTGTGATGGCTGTGAAACACTACACATCTAAAATCTCCTGCCACGAAGACCTGGAGCGCCTAGAGACTTACGGCTTCAGAGGAGAGGCTCTGGCATCTATATGTGCCATATCAGAGGTGGTCATTACAACCAAAACTGCGGATGATGATTTTAGCATTCAGTATTCAGTCGATCACAATGGACAGATCGTCTCTCAAAAGCCGTCACATCTTGGCGAGGGCACCACTGTGTGTGCAGCAAATCTGTTCAAGAATCTCCCTGTCAGACGGCAGTATTATTCCAACACTAAAAAATGCAAAGAGGAACTGAAGAGGGTCCAGATTTTACTCACGGCCTATGCTGTTGTTAAACCTGAGTTAAGGATCACATTGAGCCACAACAAGGCTGTGGTCTGGCAGAAGTCCAGGGTGTCGGATCACCGAACTGCCCTCATGGCCGTGCTCGGAGCGGCCTCCGTAGCCAACATGCTCCCCGTCCAGCATCACCAGGAGCAACCAGAGATTGGCATCGATGGATTCTTTCCCAAACCGGGCTCAGATTTTAATTCCACCAGCTCCTCTACGCCTGATAAAacattcatctttgttaatagTCGACCTGTGCATCACAAAGAAATACTTAAGCTTTTTAAGCAATACTACACCAGCGCTCAATCTAATAAAGAATCTGCCAATCGCCGTTATCCCTTTGTGTTGATAAACATCACCATACCTCCCTCGACTGTGGATGTTAACCTGACTCCTGATAAAACCGAAGTGATGCTACAGAACAAGGAAGAAGTCCTGTTAGCATTGGAGACTATGTTAATCTCCTTGTATGGGTACTCCATTGACAATGATGATCTCAAATCTGGAGGAAATCGCCCTGGTGTTAGTTCTGTGAATGCACCTGAACACACTGATGTAGTACCTACACCTTCCACTGATGTTAGTTTGGAAGATGCAGAATTACTTGAGATTTCTCCTGCAAATGCCGATAAACAAGATGGTGAGCTATCCTTGAGCAACACCGCAAACACCAGCTCCTCTTCGATTTCAGAGGATTGGGTGATCAACAGAAGCTCAAGTGATTTCGACAGTATTAATTCCTCATTACCCGCTGACGATGTTGTAATGAACTCTACAGCTGATCTAAACTGTAACTCCCCAAAGGCGTCTAAGAGTGACAGCGGCCCTGGTCAAGAGAGCGAAGTGTCTGCTGAGAGCTGGAGCACGGGCAAGGCCTTCTCAAATGAAGTCACCAGAGAAAGCCTAGAACCTGTGAAACTACATGTCCCGAAAGCCCATGAAGCCCTCGGAGGAACCCAGCCCACATGCACGAGGTCCAGCCCGTCCAAGAGGCCTTCTAACGTTATTATGGAGAAAATGGCCAAGCTGACAGCCTACGAGCTGATCAGCAACCGCTCCGTGCGTCAGCCCTCGTCTGCCTTTTCACTGTTTGAGCAAGACACCAGATCGCTGGTCCTCCAGGAGAGCCCAAGAGCCAGTCCTCAGGATGTCACAACTGCTGTGAAAGAGAGATGGGAAAGCCTCGGGGAGGAAGACCGCAAGAAGTATGAAAGCAAGGCAGAAAAGTCTCTGAACGCCTACAACCTTCAAAGGAAGAGGGCAGCGGAGGGAGGTGGCCAGTGCGGAGAGGGCAAGAAGCAGATGAGCGCCGAGTCTTCATTGAACAAAGCTCAAGGCGTGAAGCGCAAGGCCCCCCTCGCCAACCAGCAGGCCCTGGACAAACTCTTCTCCTCTCAGCCCTCGAGTAAGAGGAGCCCTGCCAAGCTCTCCAAACCCCTCCCGTTCAGTATTGCAACCCTCAAGCAGAGTCTTAACCTCCTCTCCTACCAGAACAGCTCAAGTGCGCAGGGCCTCAGGCTTGTAAACCGCTTGGCTTCTCACGGTGCCTGGGTCGTTTTATGCGGCAGAAAGCTCATGCTGTTGAACCCGTTTCGAGTGGAGGAGGCCTTGCTGTTTAAAAGACTTCTGGAGAATAATATACTTCCAACCGTGAGGCTGCAGACCCCTGTACAGCTGACAGATGGAGTGCTTGGTGGGCCTGAGTACATGGATGTTCTCCTGAACATGGAGAAAGGCAGCGCCTGCTTCAATGGAGACATCTATTTCACTGATCCTAGGCTCGTGGCAAATGGTTTTGAGATTAAGATGATTCCAGATGCACCTAGGGAAAAGCAATCATCTTTAAATCATCTGTTGAAAACCTCCTCCACCTTGGTTTTTCTTTCCAGTCCACAAAGACATGGTAATAGCGTAATTTGGTGCGATGCCCGCCTGACTTGGTTTCCAACCAGTTTCTCGTCTTCTGAGAGGCATGTTGAAGTGACGGGCATGGCCGACTGCATGCCTTTCTTCGGGATAGGAGACCTGAGGGAGATTCTGCGGGCTATAAAGGTCCAGGATGCAAAAACCGTGGAGCAATGTAGACCTCTCAAAGTCTCAAACTACCTAGAGAGTGAAGCTGTGAGACTAGCTAGACAGTTACCGCTGAACCTCACCAGAGCTGATGTTACAAATACGCTTTGCCGAATGAAACAGGAACTCGAAGAGGAGAGTCAGGTCTGCATTCACAGACGACCATTTTTTCACAATCTGGTTACCGTTCCTGAAACTGAGCAGGATGCTCAGCAAATCATATCTAATTCTTGCTAAGGACTGAAACCAAATTGTCACACTAACATTTATTGTACCATATACTAGTATGAAAGTTGTGATTTGGAATAATAAATGTTTGCCTTGTTGAATTACGGTTTTAATTGATGATTTGAGATGTAAATGATTCTGATTGTCTGTGTTTAATCAAGAAGAATATGTATTGCTTAGGTGGTTTCCAACCAGAAAGAACTGCAAGATCTATGCACACGCATCactatttcatatttcatatcacACCATGTTGCAAacagaataaatgtaattaagatttattaaatgGCTGTTTCAGTCCAGATCTGACATCGCTGGGTCATGAGTGATGTTAATTTTTACGAACGATTTTATGAGggcaaaaaaaatctgaatatcaATTACGATACAAAATCAATTTTCATTGATGGTTTGCTTTTCTGTCTTAATCTATTCCGGAAAATTACTGATAATGAAGGAAATGGCAATCGCTCAACTTTAAATGTTTGCCTTGTTGACTTTTgattagaaaagaaaacaagccAGAACTACTGACCCCACAGCAGATGCTAGTGAACCACAAAATTTAATGCAGTGTGGTTGTAAATTCACTTTCCCCCAAAAATCAGCACCTTAAATGCTGATCATGAAAGTCGGCGCTAGGGGCCCATAAAGCCAGAAGGGTTGGGCTCTGGGTTTTGCCGAAAAAGTGTGCAGTCACAGTCAGGGACCTCCAATTACCAGCTGAAAATAAGGCTCAGATGCTGTGAAGTTTTAACAGTTGCTCCCCTGTAGCCATATGGTTTGTGGTTTTTTAGTGTTTGATCAGTTCCACGAACTGCATTTTAACCTCTGGGGACCCAGTATTTCATGTTCGTCCTCTGTAGAGGACACGAGTCCACAATTTtgagtctttatttttttaaggaaatgaaTACCTTTATTCCGACTGATCAAAATTGTGAACAGTAAagacaatattacaaaaaaataaatatttatttcaacattgCATTGTATCTTGTTTTCCAAAACcatattaacatgtttttaacattgacaaTAATATGTAATGATTCTTGAGCACCACACCAACATtttcttaaggatcatgtgacattaagaactggagaaaaaaacaattttcaaataataaatttttttaaattgttacaatattttgtaatattttgactGAATTTATGTGTACGATGcagaacaatattaaataatcctttaataaaatgaatggtAGTTTTCCTAgttaaaaggaaagaaaaacatttaaagaaaatgtaggAACCTTGTTTCATTCTTAAAGAATGATAAAAAgcacaacataaaac

Function

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0007131 reciprocal meiotic recombination biological_process
GO:0032389 MutLalpha complex cellular_component
GO:0030983 mismatched DNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0032407 MutSalpha complex binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K10864 PMS1; DNA mismatch repair protein PMS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251727.1 lncRNA downstream 3491 19674731 ~ 19681399 (-) True LOC122351289
TU106096 lncRNA downstream 13726 19667000 ~ 19671164 (-) True G71667
TU105978 lncRNA downstream 141043 19537741 ~ 19543847 (-) True G71587
XR_006251732.1 lncRNA downstream 159300 19519740 ~ 19525590 (-) True LOC122351304
XR_006251749.1 lncRNA downstream 176805 19496912 ~ 19508085 (-) True LOC122351387
TU106074 lncRNA upstream 414 19709384 ~ 19712184 (-) True G71645
TU106115 lncRNA upstream 21766 19730736 ~ 19731239 (-) False ankar
TU106128 lncRNA upstream 82277 19791247 ~ 19791560 (-) True G71692
TU106135 lncRNA upstream 90642 19799612 ~ 19807087 (-) True glsb
TU106137 lncRNA upstream 90642 19799612 ~ 19804599 (-) False glsb
XM_043248250.1 mRNA downstream 41957 19636451 ~ 19642933 (-) True pofut2
XM_043248803.1 mRNA downstream 50089 19569168 ~ 19634801 (-) False abca12
XM_043249432.1 mRNA upstream 4515 19713485 ~ 19716443 (-) True adat3
XM_043248068.1 mRNA upstream 10972 19719942 ~ 19731794 (-) True ankar
XM_043249547.1 mRNA upstream 24930 19733900 ~ 19736121 (-) True asnsd1
XM_043249549.1 mRNA upstream 27063 19736033 ~ 19737211 (-) True LOC122352057
XM_043249391.1 mRNA upstream 41572 19750542 ~ 19766793 (-) True wdr75
XR_006251863.1 other downstream 1115008 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 2429399 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 2861115 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 2861196 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 3913026 15771421 ~ 15771864 (-) True G70663
TU106113 other upstream 11528 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 87287 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 172854 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 780194 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 780194 20489164 ~ 20503890 (-) True G71938

Expression Profile