RNA id: XM_043249053.1


Basic Information

Item Value
RNA id XM_043249053.1
length 1877
RNA type mRNA
GC content 0.51
exon number 10
gene id desma
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7295578 ~ 7301529 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGCTGCTTGACCCTCATTCTACCACACTGCCTTCAGCGAAGCGGCATTAGCACACCATACAACCCTTAGAGGCCCAGTCATGAGCAAGTCATATTCAGCTTCAGCCGAGACGGCTTCCTCTTACCGCCGCACCTTCGGCTCCGGCCTTGGCTCCTCCGTTTTCTCTGGCCGCGCAGGTTCCTCTGGATCCTCTCGTGTGTCCTCCAGAGTTTATGAAGTCACCAAGTCCTCCTCTTCTCCCATGTATTCCAGCCAGCGCGCATCCAGCGCTTCATTCGGTGGTGGATCAATGGTCCGTTCCTATGCAGGCCTCGGTGAGAAGCTGGACTTCAATCTGGCCGACGCCATGAACCAGGACTTCCTCAATACACGCACCAACGAGAAGGCAGAGCTGCAACATCTCAACGACCGCTTCGCCAGCTACATCGAGAAGGTGCGCTTCCTCGAGCAGCAGAACCAGGCCTTGTCTGTGGAGATCGAACGTCTGCGGGGCCGCGAGCCCACGCGCATCGCAGAGATGTACGAGGAGGAGATGAGAGAGCTGCGCAGACAGGTGGATgcactgaccaatcagaggtCCCGCATTGAGATAGAGAGGGACAACCTGGCCGATGACCTGCAGAAACTAAAACAGAGAGTTCAAGAGGAGATCCACCAAAAAGAGGAAGCTGAGAATAACCTCTCTGCTTTTAGAGCTGATGTAGATGCTGCCACTCTGGCCAGGCTGGACCTGGAAAGACGTATCGAGGGCCTTCATGAAGAGATTGCATTCCTCAAGAAGATCCACGAGGAGGAGATCCGTGAGCTGCAAAACCAGATGCAGGAGAGTCAGGTGCAGGTCCAAATGGACATGTCCAAACCAGACCTGACTGCCGCCCTCAGGGACATCCGCATGCAGTACGAGGCTATCGCTGCCAAGAATATCGCCGAGGCTGAGGAATGGTACAAGTCTAAGGTGTCAGATCTGAACCAGGCGGTAAACAAGAATAATGATGCTCTCAGACAAGCCAAGATGGAGACCATGGAGTTCCGTCACCAGATCCAGTCCTACACTTGCGAGATCGACTCTCTCAAGGGAACCAATGAGTCTTTGATGAGGCAAATGAGGGAGATGGAGGAGAGGATGGGTCGTGAGGCCGGCGGTTTTCAGGACACCATTGCCCGTCTTGAGGCTGAAATCGCAAAAATGAAGGACGAGATGGCTCGCCATCTCCGCGAGTACCAGGATCTGCTGAATGTTAAGATGGCACTCGATGTGGAGATCGCAACCTACAGGAAGCTTCTGGAAGGAGAGGAGAGCAGgATCTCCTTGCCTGTGCAGTCCTTCTCTACCTTGAGTTTCAGAGAGACAAGCCCAGAGCAGCACCACCAGCaccagcaacaacaacaacaacagcgtTCATCTGAAGTCCACTCTAAGAAAACAGTTCTGATCAAAACTATTGAGACCCGGGATGGCGAGACTAGGACAAGTGAGGGCATGAGTGCCCTCAGTGCTCAGTGTgtCGTCAGTGAGTccacacagcaccagcaggaCATCATGTAAAGCCTATGAAACAGATTGAGTTTCATAGAATCCCTTTCCCTAACTTACATTTTCACTGATGGCCGCAGGCTTTTCATGCACACGCCCAGTATTGTCACGACCCATTACTGCATATGTGGATGATGcaggcaaaaaaagaaaagtgagcTGAAGAACAAGAGGGAGAACGAGCAAAACGGCATAATATGCATATTGTACGGCGAGTCCTGAATGTGGCCAGATGATCTCAGAGGTTTTTGTtgatatgaatgtatgtgtggtAGGGTCATATCTGAAAAGCTGTTCCACTGCTACAAAAAGacaataaactgtattttcttcCTATAAAA

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0060047 heart contraction biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07610 DES; desmin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101108 lncRNA downstream 141624 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA downstream 141624 7146440 ~ 7153954 (-) False LOC122351350
XR_006251860.1 lncRNA downstream 260217 6982678 ~ 7035361 (-) True LOC122352164
XR_006251826.1 lncRNA downstream 400181 6892652 ~ 6895397 (-) True LOC122351994
TU101086 lncRNA downstream 412602 6882585 ~ 6882976 (-) True G68357
TU101258 lncRNA upstream 26300 7327829 ~ 7341494 (-) True G68473
TU101275 lncRNA upstream 79761 7381290 ~ 7381508 (-) True G68489
TU101356 lncRNA upstream 513720 7815249 ~ 7818832 (-) True G68555
TU101355 lncRNA upstream 518479 7820008 ~ 7821889 (-) True G68554
XR_006251831.1 lncRNA upstream 1169334 8470863 ~ 8474578 (-) True LOC122352023
XM_043249469.1 mRNA downstream 27278 7259194 ~ 7268300 (-) False LOC122352006
XM_043249470.1 mRNA downstream 27278 7259194 ~ 7268300 (-) False LOC122352006
XM_043249468.1 mRNA downstream 27278 7259194 ~ 7268300 (-) True LOC122352006
XM_043249467.1 mRNA downstream 38965 7248019 ~ 7256613 (-) True slc23a3
XM_043248372.1 mRNA downstream 77570 7215013 ~ 7218008 (-) False mitd1
XM_043248159.1 mRNA upstream 27553 7329082 ~ 7336383 (-) False dnajb2
XM_043248158.1 mRNA upstream 27553 7329082 ~ 7336383 (-) False dnajb2
XM_043248157.1 mRNA upstream 28575 7330104 ~ 7336386 (-) True dnajb2
XM_043248156.1 mRNA upstream 41578 7343107 ~ 7346286 (-) True tuba8l3
XM_043249676.1 mRNA upstream 45581 7347110 ~ 7349416 (-) True LOC122352131
TU101110 other downstream 146958 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 1034509 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1195695 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1251653 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 1372758 5919757 ~ 5922820 (-) False LOC122351463
TU101496 other upstream 712920 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 777607 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1039414 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2606659 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 3131978 10433507 ~ 10441872 (-) False trim13

Expression Profile