RNA id: XM_043249068.1


Basic Information

Item Value
RNA id XM_043249068.1
length 5808
RNA type mRNA
GC content 0.42
exon number 13
gene id carf
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8212788 ~ 8222003 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAACCTCGGTTACTGCacttttactacaataaaaccatgattactttatataattcataagAGACAGCCTTTTACCGTTACTTGTTACTTGTTTTTACTAATGCATGGTCTTATAGGCACTCTTTTGtcataaactttatttaaaactaaaatagggGACAGGGCCTGAAAGATGCATGTCCAAGGGGAGCCCACATAATTGGACGTGGCGTGTGTTACAGCCTCACAGGGGGTTTCTGACCGAATGCACTGAGAAATATAACATCTTCATAATAAGTCTGTGAATGCAACTCAATGCCAGAACTTTCTCCTGGACAAACAGCAAATTGTTCTCCCTGTGAGTCTGTTTCTCCGTTCTAGAGCCCAAAATGAGTCTGCTGACATGTTCCGTCAAAACCCCAGAGACTGAGGCTGAGCGCGAGCAGGCCGGACTCCCCTCGGAGGCCCCGGGGCCGCTCACGCTCTAATCTCGCTCCCAGCCTGGGATCACGGGCCCAGATTCCTCGCGTTTTCTTTTCGCTCCGAGCGTGCAAGACTCATTGTTACAGGCTCAGCTCAAACACCGTCCTGTTAGTTTAAACCTCACAAAGGATCAGCTGCTTCAACACAGTCATACAGGATCCTCCAGGTCTGTGGCAGCCGTAGATCTGTTCCTGTTTGGTTTTTCCACAGGAATGCGGAGAGGCGACTTTGCTGTGCGTAACATTTGAGAACTGCCATTTAAGTCTCACACTTATACAATAAGATGCAAGATTTGTGAACTTTCAGGGGTGTTGAAGGCATGCGTCTTGTTGTTTGTTAAGGCGTATAGCGCCCCTTACCGGTGAGAAGCAGTTTATGTATAACCTgcgtttattttacttgttcaTCATTTATGTCCAAACGTACAGAAAACTATAAACAGGGAAactatatttcttaaaaaaacaaataatacattaaaacagcatGGCATAAAGGTCTTAATTTtgcaaaattacattcatttctttctcaCTCATTCATAAACCCGTGCCTGTCATATTCAAATTACACgtatgtgatcctggaccacaaaccaAGTGTcgagttataaaaaaaaaaaaaagttactaaatgaataatcattgatgtatgatttgttaGGGTAGGACAACATTTCGCTGATATACGACTATCTGAAAATCGCCTTTTAAAGTAGTCCAAactccttagcaatgcatattaggCTACTAATCAACTAATCAAGTTTTGATATAGGCGTATAGTAGGAATTATAGGCCACTTGAACATCTTTCTTAAAGATTACTTCCGTTCACAAAAGCCCAGGAAGTCAAAGTGAATTGGTTTACCCACCAATTGcttatatgtgtgttctgtACATTTTACTTTCACTCCCATATATTTGCATTGTTACCTAAcaattttagtaaaatattcTTATGCAGATTAAATTTGACTGTTTCACTATGAATGTGCAAAACGTACAAAAAAGAGATCAATTTATCTAAATAGCACACTGAAATATAACGGTCTGATAGTATTAGCGAAAggattaaaaagtttttttgtataaacGTGCACTTGTCATCTATAAATGAACGAAATAAAGCACCTTTCCGAGTTCAAAGTGAAAGAAAGCGTGTGTCCTACGGAAGCCGTGAGGACTCAACCCTACAGGCGGGTGATGCGCAGCTGACGCGTTTTTCGACGCGAGGAATCCTGGACGAAGACGAGGTTGAGTAGACTCGTTTTCAATTTAGCGTCCTTCCTGTATATAAAGCCTGGGCTCGGCGTTACCCCGCTCGTCGGGGAGCGCTGTCGGAGCGCGGCGACTcggaaaaaatatacatttagttAACGCTGGAGCTCTAGTTTTCTTTCGTTTATACGCTTTGTGTTTTCACGAAACTGCCGCGCTAGCTAGCACTGATCCAATATGgcgtttatgtttaaaaaaatgttaatttgtccCATTTGTATAACGGTCTTCGGTCCATAaagcaaattatattaaattacaccACTCGAAAAGCATAAGAACACTACAAATTGCTGCctaatatgaaatataagtaCGATCAATCAGTGATTTCAAATAATCAATAGCAGATTCACCATTACTGCTGCTATTACTGCAATCAAAACAATTAACTTGACATCTAACGAGATGGGCAGTTTTATAGAGATATATAGCTTACATATACTTGAACTAAATGTGAGTAGCATTGTAAATATCTAAAGCGTTCGGTTTGGCACCagtgaagatattttttgtcCTTATTTACtgaattcacaaaaatattacaacgtGTCAATAGAAATTCTGCAGATTTGTAGGTTATCTTTGGCTTAGGCTCTTGATTTAGAGTGATGTGTATGTCTGTCAGATTGAGAATAaatggaggaggaagagagagatgtGGAGGATGTTCTTCAgtctgaagagagagaggatgcTCGGCCTGAACTCACAGGAGATGGGCTGCAACACGACAAAAACTCAAATGCTGAAGAAAATGCAAAGCTTCCACCAGTCATTCCAGCCTCAGAAACTgtagcagccaatcagaagccttCCACGGTCCCGACGCAAACAGAAAACTTAATTATACTTGACCAAAACGGACATCCTGTTCAATATGATCGCGTGgtGATTTTGACAGGGGGGAATGGACAATTATTTGGCGTCCCGTCTGTGTCTATGGGGGCTGCTCAGATGTTACTACCTCACGGTCAGCTGTTGAATGTAGCAAAGTCATCAGGTGTCTTTGTGGAGAAAAGACAGCAGACAATCATCACATCCATAAAAGACAGTGATGGCACTCATAGTTTAGCTGCAGTGGCAGCTCAGAATGTCACTGGTGTTAAAATTCAGAGGAGAAGTCCTTCTGATGTGTTTGAGCCTCCAGTGAAGCCACTTCCACCAGGCACACCAAACTGGGCTCTGAGACTGCGCCGGTGTGAGAAGATCGGTGACTCGTACCGTGGTTACTGTAACACAGAGGCCGAGCTGGAGGCCATTCTGCTTCTACACAAGCAGCAGACCCACACGGTGTTTGGCACCCGGCAGTCACCCTCACCGGCTAAACCTGCCACCAGACTCATGTGGAAATCACAGTATGTGCCCTACGATGGCATCCCATTTGTTAATGCAGGAAGCAGAGCTATCGTGATGGAATGTCAGTTTGGTCCACGGAGGAAGGGCGCTCAACCCAAAAAAGGGTCTGATCAAGAAGCGAATCAAAACATCTTCTACAAAGCAACCTGCCCTGCCAGaatatatataaaaaaagtacgAAAATTCTTGGAGTACAAGGTTCCGACAGATCCCAAAGTGGACAAGAAGGTAGTTCGGCAAGAGCAGGAGAAAGCCTTCTTCAACCTCAAGAAGACTTTATGGGATGTTGGAGGTGTTGTAAGGTATTACATCCAGCTCCCCACAGAGAAAGCCCACCTCTACCACGACGTGGACACTGCAAACCTGCCACCACTTCCAGAGCAGATCTGCTTCGCAGAGGAACAACTaaatgaagaggaagagagagaggagctggACGTCCTGATGGAAGATGAAACACCTCTGCCCTCTCGACTACACCCGCTCGTAGCAGAGAAGATCTGCGAGTTGGTGGCACAAGGTCATAGTGAGGTTTACACCGTCCGCAAGCAGCTCAGGTATGACTCGGAGGCTTTCAAATCTCCCTGCTTTCATTTGCTGAAAAGCTATTTACTGTTGCTTCGTGAACGCCCTGGCAGGAGGTTTGTGGAACGTGAGATGTTCAAATCGGAGgaagtgcctgagagacacaatcTGTGTTACTTTCCCACCGTCAATGACATCAAGAACCACATCCACGAGGCACAGAAAGCTCTTCAGATGCCTGCGGGACCACTGGCTACCACAGACACAGAATGGAAAGCAGAGGCTAATAACTTGCTTCCAGAGACTTTGACCTTGACCCTGACTCCTGCTACTGTGGGCGTATCCTCTCAGAAGGAAGGGCTCCTGGAAGGAAGCGACACTCTTTCTCCAGAGGCTGTTCAGCTCTTCAGCTCCCTCACCTCACTGCAGCCCAAGATCTTTGCACATCTCCAGGCAATCCAGCTACAGCCTGCCTTGTGTCCAGTGGAAGCACCACCAGAAGCTCCACAGCCTGTCCTGCTGAGTCCCTCCCACTTCCTGCAGTCGGGTCCCAGTGCTGGGGAAAGCGTAGCTGTGTGCGACGGCGTGACTCAGCTGGTGAGCGTGGCCTCGGCCGCTGACGGGGGCATAACACAAATCCTGCTGGAGGACGGACAGGCCATTCCTGTCCAGGTTGTGCACCCTGCAAACATAAGTTTGACTCCCTCGGCGGAAGAAACTCCAGTAAACTGAGTGAGAGGCTGGAAATACAGCAATGGGGAAAGAAGAGGACCTTCTGAGCTCTTGACCGCTGGAGGATTCATTCACTGTATCATGTACAGTATTATGTAAACATGGACTTGTATGCAATATTGATAtgttgtttgttagtttttttttttaatgattgctATTTTAAGTTATTATGGTGACACCAAGAGGACAAAAAAAgtctaactaaataaatgagaccagaattaaatatttaaaggttAACATCTTTTATTTCAGAGGACATGGTTATACACCGAACTAAGGCACTTTTGTTTATTATCTTTTTGATTAGAAGCCTAATGGATCGTTGTGGTGGACATTTTAGGAGGGCCGGTTTATTtgtagaattatttaaatgcagtatATTGCTAATTGCTTATTCATGCTGgttctttgctggtttaagctggtcttttgctggtttatgccGGTCACGTCCTggcaaaggaccagcttaaaccagcatcccagttTCAAAACAttcctaaccagcatatgccgtttttttaatatttatcttttatacTGCAACTTCCGCTTTAGTCAGTGTCAGATGTTGGTGATTAGCATACATTTAAACAGCCCcagtgcacttttatttttgtcccaGGACAGATtaggaaaaatattattagtgttatCCATTAGGATGAAGGCAAAAATTGAAGGAGGGAGCACATGTCGTGTCTATCCAGCATTCCTCTGGAGcagcctttatttaaaaagactgGGGACGTGTTCTCCACATGCAGGCCAAATGTACTTGACCATGCCGTCATAATGACTTTTTCCTGCCAACAGAAGCCAGCGGTTCTCTTCTTGTTGGAGCTTTGCCtcaaaaaaaaagctggaagGTAAATTCAAGCTCACTTCTTCTCTCAAAAGCGCAACAAGGGATTTagttggaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgagactATTCTCTGGTATAGATCAGTGCTGGAAACACATACATTGGCGTCACCTGCTGGTCAGAATTCTGTAAATGAATCGAAAACGCTGTCCAAATCTGCATGAAGGCACCTTTCACAAACCAATTGCAATATTTGAGGTAATTAGTCTTATGTTTtgccattattattactatttaatgaTGTTATTATAGAAGTTAGTGTGAATATGGATGAAACAATTGTAGGTTTTGTTGGTGCGATCATTGTCCGAGCAATAACCACGGTTTTACGATTACGCATTCGATCATTTCACAACATTATCGTGCATAAAATCGCATGAAGACTTTTTAGatattaaagtgttatttattgcTGGCTTTTGgaacataaataatacagttaCCAACAATACggcacaaaataataataaaaggcaaAGAAATGTCCATCTCTcccactgaaataaaaaaggtgaCCTCT

Function

GO: NA

KEGG:

id description
K21595 CARF; calcium-responsive transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101355 lncRNA downstream 390899 7820008 ~ 7821889 (-) True G68554
TU101356 lncRNA downstream 393956 7815249 ~ 7818832 (-) True G68555
TU101275 lncRNA downstream 831280 7381290 ~ 7381508 (-) True G68489
TU101258 lncRNA downstream 871294 7327829 ~ 7341494 (-) True G68473
TU101111 lncRNA downstream 1058834 7146440 ~ 7153954 (-) False LOC122351350
XR_006251831.1 lncRNA upstream 248860 8470863 ~ 8474578 (-) True LOC122352023
TU101773 lncRNA upstream 539768 8761771 ~ 8835225 (-) True G68822
TU101778 lncRNA upstream 571858 8793861 ~ 8801749 (-) True G68826
TU101782 lncRNA upstream 580382 8802385 ~ 8805405 (-) True G68830
TU101792 lncRNA upstream 594517 8816520 ~ 8817618 (-) True G68839
XM_043248551.1 mRNA downstream 2869 8204280 ~ 8209919 (-) True LOC122351474
XM_043249161.1 mRNA downstream 117941 8076468 ~ 8094847 (-) False als2a
XM_043249162.1 mRNA downstream 118024 8076468 ~ 8094764 (-) True als2a
XM_043249500.1 mRNA downstream 138342 8064653 ~ 8074446 (-) True mpp4a
XM_043249447.1 mRNA downstream 149770 8056543 ~ 8063018 (-) False tmem237a
XM_043249072.1 mRNA upstream 1698 8223701 ~ 8257719 (-) False fam117bb
XM_043249071.1 mRNA upstream 1698 8223701 ~ 8257716 (-) True fam117bb
XM_043249067.1 mRNA upstream 35940 8257943 ~ 8316394 (-) True bmpr2b
XM_043249291.1 mRNA upstream 94960 8316963 ~ 8334613 (-) True si:dkey-230p4.1
XM_043248552.1 mRNA upstream 114425 8336428 ~ 8338371 (-) True hce2l1
XR_006251804.1 other downstream 117941 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 194683 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 1064168 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 1951719 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 2112905 6099347 ~ 6099883 (-) False LOC122351979
unassigned_transcript_1465 other upstream 118940 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 1686185 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 2211504 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 2211504 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 2211504 10433507 ~ 10441872 (-) True trim13

Expression Profile