RNA id: XM_043249071.1


Basic Information

Item Value
RNA id XM_043249071.1
length 5404
RNA type mRNA
GC content 0.49
exon number 8
gene id fam117bb
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8223701 ~ 8257719 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tacacaaagcattatattatcatatacGTATCGTATTAGTGACTTACTCGTCTTAAAGAAACGAaccttttcaaaaaaagaaaagaaaagctgaatggacacatgcaaacaaacctTTTCACAACTTCTCTTCACAATGAACACGTTGTGGGAAACTGGTGCGATCATTTAATCTCTCTTTATCATACCTCTTGCACAGATGTAACCACTGCCTGTGAGTTACGAGACAGAAAACTGaatatagtgtatttttaaacactgatcGTACCAAACATATAAGTTGTAAATATGACCGCACACGGTAAAGAAATTCTGTAAATCTTCTGTGTAAATCATAACGATCGTGTTCTTTGCGAAACTTTTCCTCGTATAACTGCGTGCGTTACCTCGCCGAATCAAAGAATCCACTTTCCGGCCAATCAGAAGTTGAGAGGGCCGAGcgagcagccaatcagaacggAGGAGGCAGAGCTCCGGATCGAGTTGACGGTGCGTGGCTCTGATTTGTCTCAGTTTACTCGAGCTCGCCAAACGGCTCGGCCGCGCCGGTCAGAGAGCAGAAAACAGACTTTCCATGGAGTGACACGGGCACCAAAGAGCATTCGCCACCTCAGACAGCCTTAAACGTACGTCTAGAGTGTTTATGTCGAGTTGCGTGTCATTTCCCGGCGAACAAAATGTCTCAAAGGGTTCGCAAAAACGGATCCCCGACGTCTAACTGCGGCGGAGCGACCGCGGGAAGCCCGAGCGGATCCCCGGGGATCAGCGCCGCTGGAGTGAGTTTACTGGGTCGCCTGCTGCCCATGAAAGCCACGGTTCCCTTCCAGCTGAAAACGCAGACACAGCTCCCTCTACAGTCACGGACGGCCCTCTCCTCCGCCGGTAACGGTAAATGCCACAGCGGCGGAACCCACAGCCGGAGCCCCACGCGATCCCTCTCCTCCAGTGCCTCGAACGTTTCTGCAGCCACGTCCACTTCCTCCGCGACGTGCGCGCAGTTCATCGCCGTTTCCTCCGCTCCCTCCTCATCGTCgccttcttcctcttcttcaccatcctcatcctcatcgaGAACTAGTCCCGTTATCGCCGTGCACGCGCCGAGCCCCAGAGCGCCCCACGCGCAGACACCTGTGCCATCCTCGTCAGGTGCGCACCTGAGCCCCCCGTGCTGCTCTCCCTCCCAGCAGGTCAGCTGCAGCTCGGACGCGTCTGCCCTTACCTCTAATTTATCAGCCTCTCCGTCTTCATCCTCGTGCGCTCACAGGGCCAAGCCCCTCCAGACCCCCGAGCACGACAGACTGTCTCCGGAGAGGCTCAGTCCCAGCTCACCTGTCTGCACAGACAAGCATAGGCTTCCTGTGGCAGGGTCTTGGTATACCACCAGCAATAACGGTAGCATTCGTCGCACCTCTTCTTTGGATGCGCTCACGGCCCCTTACCTGTCTGGACACTGGCCCCGGGATGCCAACCACGCCCCTTGTGCCCCTTGCATGAGAGACAAATCCACTCAGACCCCCAGCGCCTGGGCCGATGAATGCgaagagaagaagaagggcTGTCACAAGCGCTCAGCCTCCTGCGGCAGCACTGACCAGCTAAAAGAGATTGTGAAGCTGAGGCAGCAGCTGCAGCGCAGTAAACACAGCAGCCGTCACCATCGAGACAAGGAACGCAAATCTCTCTTCAATGGCAACCATGCTgctttcagccaatcacagGCTCCTATTCCAAAGAGCGTCCTGATCTCTATCCCCATCTCCAAGTCCTCTGTCTCTCGCTTCCGGAACAGCGTGGAGGGGCTGAATCAGGAGATCGAGCGTATTATTATCCGAGACACAGGAGACAGAGAGGAGCATCTTATTCCTCAGGAGGCTCCGGATGGGCATCgggctcctcctcctctctgccaACGCAGCGCCAGCTCCCGCAGCATTGACACACAGACGCCCCTGGGCACCGCAGCGGCTAGTAAccacagcaacagcagcagccgCTCTCAGTCCATCTCACCCACGTTCCTGAACGTGCCAAGCGAGGCCTGCAGCGATAGTCCATCTCCCCATGAGGACGAGACTCTGGCTGACGGCCGTGAGAAAGATCTGGCTCCCAGCTCACCCCTGCCCAAATACGCCTCCTCCCCGAAGCCGAACAACAGTTACATGTTCAAACGCGAGCCGCCCGAGGGCTGCGAGCGAGTCAAGGTCTTCACAGAGGAAACGCAGGCCAGGCCTCCGCGGGAGATCCCACAGTTCCTGTGCCCAGATAGGAACAAGGTCAATTTCATCCCCAAGAGCGGCTCTGCGTTCTGCCTGGTCAGCATTCCCAAACCGCTGATGCCCACACAGGAGCTCAACAACCTCAAGAACCAGAGCGCCGGCCGCCTCCCGCCCGAACCCGAGCCGAGAGTCTCGCGAAGAACCTGCATGCTTTCCCAGCAGCCCTCAGgctcctccccctcctcctGTCTGTCAGAGAGTTAGGCACGCCCCTCAAGCAGCAACTGCGTCCAAATACCCTGCACATTTCAGTAATcgaacatgatttaaaaaaaaaaaataagtgactCTTAGAGAACAAAGCggttgttattaataatagcTTTCGTCGGGTGAGAAGATGAAACGGTTGCCTTTGCTATGCACATTTTTAGCTTTGTGCTTGTTCTCAAAGAACGAAGGCCATTTGTGGGGGGGGGTTGGGTTTGTGATAAAcgtatttagctttttattctTCCTCTACCATTTATAGATAACGAGTGAACCTGAGAAACGTGTCTCAGATCGTTatgaaaattaaactaaatgatcTTTCTCAGTACTGAGGTGGCTGCATAGATCTGTTTTTGTGAGACacagtgtatattttataatagtttgCAGTGGATCGCGTTTGCGAGAATCGTTTCTAACGTACTAGGACCGGCATGCCATTGAATACAAAGGATGCCATTTCAGATGAGACCAAGAGACCTGGTAGAGTGAATTCTGGGTTGATGAAGGTCTCCGGGACTGAATCGTTTTCACAGCGGAAAGCCTTCTCCGTTCAGTCCTGACCGAAGCTGCAGGGAAACGGGAGAGAGTGGTTCTTTGctctttctcctcttcttttctcaCTGACGGTGAGAAGACAGAAAGGTGCTAAAGATAAGACTAGCGAGCGCGAGAGAGAACGTCGGTTAACCGCTACAGGACGAGTGGCCTGTAAACTCGATTCTTTTGTTTGCGTAGTTGTAAAATGCGTTTCGAATGCATATGGGTCCAAACTCTGAACTTCGAACCCAGCAGGGAAAAAAAGTGAGAGGGAGAGGAGGGCAAGACGGGATCTGGGTGGACGGACGAGATGTTTTCTCACCTCTGGCAAAGATTAAGCCGATTTAGCTTGAGGAATGTTTGAAAGAAGACATGACAAGTACAAAACCGAACTGCGAAAATGTCCAGATAGTTCACAATTCAGACGTCTATCAAAACATTCGTGGAATGTTTCCGGTGATTTCCAATGAAATAGTTTACAAAGTCAGAGCACAATATTGTCATTAGAGtgatttaatgcatgcattctgagaaatgtctgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcactagATGCAAGCAATTAAAAACGGCACAGATTTTCTCTCCGTTTCAGTGTCTAAGTGGCATTTTCATCATGGAGCAGACTTTTCCAAATCTTCCTTATTGAGCATCTAGGCTGATTTCCTATGCTGTAGTTGTTTTTATCGTTATTTTCGTATGAAATCAAGTAGTGTCTGAAAGATTGTCATTTTATGCAGCTCACGCAAGTGCTTCTGTAGACTTGGCCAAAGAGAATATTTCCTGTGGCTCTGTGACAGTCATTGTAGATGGAGAAAGATGGAATTATAAGGAgacttaaagtgcccctattatggataatgaaaggttcatattttggttttgggagtccccaacaacaggttgccAGGCattcaaggtcaaaaacactttcattgtcttataatatgcctTTTTTTCGCTCAACTGCCGCCATACGTTTCTCTCAACAGTTCATTTTACCAAAGCCCTCCCACAACCCTCGCCTGACACTAATCTCTGGTGATTGGTCTGGTGATTAGGTTTGTGTTGGTTTGTGTCCTGCGTATCCAGGTAAAGCAGGCTATTTTACTAGCGGCACCTAGTGGTAAAGAATTAAtttgcgttttcattcagactaTCACAAAACGACCAACAAGTGgacgggcaatatgctaatgcttCGTGCTGACCTCATACCGAGGCTTaagattagaaaaaaaaatgattataaagaaaataacttcAAACGCGgcacactttcagatttaaagctgttttacacactgcatgaaagttaattttcaaaaatccataatggggcactttaaacagtttacccaaaattGTATGATTTTCCCATCTCCTGTGGAACacgtaaaatatattttgagaaaaggttttttttttttttttctcctgtccAGACAATGAAAGTCAAAGGGCACCGCGACGGTTTGGTTCCCGACACTCTTATTGTCCGTTCCACATTAGACTGCCACACGGGTTATGATAGCGAGCGGGCCTAAACGATGACAGAACGTTCATTTTgactgaactatccctttaatggaCAACAGTAATGCAAACTGAACGTTGTGTCACTCGCTTCCAGGAGTAATTTAGGATTTCCAGAAGTGCCGTGGGAAGGTTTTCAGCATCGCGCTCGGGTCACGGACGGTCCGCTTGCGGTGTTGCTCGTGCTTCGCGCGCAGGGTGGGGTTCCTCAAAGTTATGTTGTTGGGAGGCATTTTAGCAGAGTTCCTGTTTTTTCTTGTTCGCTCTTGTAGTTAAAGCATCGTTTCGAGCTTTAACCGACATGCAACACGAACCTGGAATACTTTAGCACTTTTACACCAGCGTCGCGAATCAGTACGGGACCTCTGTGTTTGAACTGAAATAATCTCGCAGCCTGTGATTACTATCGTAGATCAGTACTCAGGAATGTAAAAGCAGCAATCTCTTCTGGCAACGGCACAAGAATCCAAACATTTCTTGCTCGAAAACAAATTGATAACGTTTTATCAAGCGCTTTGTATATCTCCTTAGGATATGTATTGAAGTAGAGAACTCTCTCACTGTAGGGccaatattaatatacttttatatgggTAGCGGCCTACTCTTTGTAATTAGAGCGGAATATCAGTGGGATATTGATAATGTACAACTTCTTAACACGGGGACGGTGATGTATGATGTTGGACGCCGTCTGTCTCGGTGGATGTTTCTCCACATACACCATATAGTCTCTTGTGTTGTTACGTGTGTATGGAACTCACCAGAATAAAGTTGCACTCGCTCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101355 lncRNA downstream 401812 7820008 ~ 7821889 (-) True G68554
TU101356 lncRNA downstream 404869 7815249 ~ 7818832 (-) True G68555
TU101275 lncRNA downstream 842193 7381290 ~ 7381508 (-) True G68489
TU101258 lncRNA downstream 882207 7327829 ~ 7341494 (-) True G68473
TU101111 lncRNA downstream 1069747 7146440 ~ 7153954 (-) False LOC122351350
XR_006251831.1 lncRNA upstream 213147 8470863 ~ 8474578 (-) True LOC122352023
TU101773 lncRNA upstream 504055 8761771 ~ 8835225 (-) True G68822
TU101778 lncRNA upstream 536145 8793861 ~ 8801749 (-) True G68826
TU101782 lncRNA upstream 544669 8802385 ~ 8805405 (-) True G68830
TU101792 lncRNA upstream 558804 8816520 ~ 8817618 (-) True G68839
XM_043249069.1 mRNA downstream 1698 8212788 ~ 8222003 (-) False carf
XM_043249068.1 mRNA downstream 1698 8212788 ~ 8222003 (-) True carf
XM_043249070.1 mRNA downstream 1738 8212788 ~ 8221963 (-) False carf
XM_043248551.1 mRNA downstream 13782 8204280 ~ 8209919 (-) True LOC122351474
XM_043249161.1 mRNA downstream 128854 8076468 ~ 8094847 (-) False als2a
XM_043249067.1 mRNA upstream 227 8257943 ~ 8316394 (-) True bmpr2b
XM_043249291.1 mRNA upstream 59247 8316963 ~ 8334613 (-) True si:dkey-230p4.1
XM_043248552.1 mRNA upstream 78712 8336428 ~ 8338371 (-) True hce2l1
XM_043249063.1 mRNA upstream 81278 8338994 ~ 8341460 (-) False LOC122351780
XM_043249062.1 mRNA upstream 81278 8338994 ~ 8340825 (-) True LOC122351780
XR_006251804.1 other downstream 128854 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 205596 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 1075081 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 1962632 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 2123818 6099347 ~ 6099883 (-) False LOC122351979
unassigned_transcript_1465 other upstream 83227 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 1650472 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 2175791 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 2175791 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 2175791 10433507 ~ 10441872 (-) True trim13

Expression Profile