RNA id: XM_043249078.1


Basic Information

Item Value
RNA id XM_043249078.1
length 4066
RNA type mRNA
GC content 0.49
exon number 23
gene id sf3b1
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15682700 ~ 15692615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACCGTGAGGATGAGTACAAGAAACGCAGACAAAAGATGATCATCTCCCCAGAGCGTCACGACCCATTTGCTGATGGCTTCTTTTCTGCCGGTTGAAGTCTGACTGCAGAGGGACCCTTGGCACTGAAAGTGGGGCAAAACGCCGGATCCCAAGATGCAGGTCAGGACATACATGGATGTTATGAAGGAGCAGCATCTGTCCAAAGAAGAGAGAGAGATCAGGCTGCAGATGGTAGAGAAAGCAAAGTCTGGAGAGCTGAAAGCAGTGAACGGCTCTGCTGCATCTCAGGCTGCTGGGGCCAAACGCAAACGACGCTGGGACCAGACAGCTGACCAAACCCCCAGTAATACCACACCCAGAAAAGTGTCCAGCTGGGACCAGGCAGATGCGGGTCCCGAAACACCAGGACACACACCTTCCAACAGTCGCTGGGATGAGACACCCGGGCGCCCCAAAGGTAGCGAGACCCCGGGAGCTACTCCAAGCACCCGTATGTGGGAACCCACACCAAGCCACACCCCAGCTGGAGCCGCAACACCAGGTCGAGACACTCCTGGACACGCCACTCCTGGCCACGGAGGGGCTACTTCCAGTGTGCGCAAGAACCGCTGGGATGAAACaccaaagacagagagagagacaCCTGGTCATGGCAGTGGCTGGGCTGAGACTCCACGTACAGACAGAGGAGATGAGTCAGTGGGTGAGACGCCCACCCCAGGTGCTAGCAAGAGGAAGTCAAGATGGGATGAGACACCAGCCAGTCAGATGGGCTCTTCAACTCCTCTGCTCACCCCTGGAAAAACCCCTCTGGGCACACCTGCTATGAATATGGCCACACCCACTCCAGGTCACCTGATGAGCATGACTCCAGAACAGCTGCAGGCTTGGCGCTGGGAGCGAGAGATTGACGAGAGGAATCGTCCACTGACTGATGAGGAGCTTGATGCCATGTTTCCAGAAGGATACAAAGTACTGCCACCACCAGCAGGCTATGTACCCATCCGTACCCCAGCACGTAAATTAGCTGCCACCCCCACCCCCATCGGAGGCATGACAGGCTTCCACATGCAAACAGAGGACCGATCTATGAAACAAGTCAACGATCAACCCTCTGGAAACCTGCCCTTCCTCAAGCCAGATGACATTCAGTACTTTGATAAACTGTTGGTCGAAGTTGATGAGTCCACCCTCAGTCCAGAAGAACAGAAGGAGCGCAAGATCATGAAGCTTCTCTTAAAGATCAAGAATGGGACACCTCCCATGAGAAAGGCTGCCCTCCGTCAAATCACAGACAAAGCCAGGGAGTTTGGTGCAGGACCACTCTTTAACCAGATCCTACCATTGCTGATGTCTCCTACACTGGAGGACCAGGAGCGTCATCTCTTGGTTAAAGTCATTGATCGTATCCTCTACAAACTTGATGACTTGGTTCGACCATATGTCCACAAGATTCTTGTGGTCATTGAACCCTTGCTGATTGATGAAGATTACTACGCTAGAGTAGAGGGTAGAGAGATCATCTCCAACTTGGCAAAAGCTGCTGGTCTGGCCACTATGATCTCCACCATGAGGCCTGATATTGACAACATGGACGAGTATGTGAGAAACACAACAGCTCGTGCTTTCGCTGTTGTAGCATCTGCCCTCGGCATTCCATCTCTCCTGCCTTTCCTCAAGGCTGTTTGCAAGAGCAAGAAATCCTGGCAGGCTCGTCACACGGGTATCAAGATCGTACAGCAGATCGCTATTCTCATGGGCTGTGCTATCCTGCCCCATCTCCGCAGCTTGGTGGAGATTATTGAGCATGgtCTCGTGGATGAGCAGCAGAAAGTGCGAACCATTAGTGCTCTGGCTATCGCTGCCCTGGCTGAAGCTGCTACACCATATGGTATCGAGTCCTTTGATTCTGTACTAAAACCTCTCTGGAAAGGTATCAGGCAACACAGAGGCAAGGGTCTTGCTGCCTTCTTGAAAGCCATTGGATACTTGATTCCTCTTATGGATGCTGAATATGCCAACTATTACACCAGAGAAGTGATGCTTATCCTTATTCGAGAGTTCCAGTCACCTGATGAGGAAATGAAGAAGATTGTCCTCaaggTGGTGAAGCAGTGCTGTGGCACAGATGGTGTGGAAgccaattacattaaaacagagATTTTGCCCCcctttttcaaacatttctggCAGCACCGAATGGCATTGGATAGGCGCAACTACAGACAGTTAGTGGACACTACAGTGGAGCTGGCCAATAAGGTCGGGGCAGCTGAGATTATTTCCCGCATCGTGGATGATTTAAAGGATGAAGCTGAGCAGTACAGAAAAATGGTCATGGAGACTATTGAGAAAATTATGGGAAACCTTGGTGCCGCTGACATCGATCACAAACTGGAGGAGCAGCTTATTGATGGAATCCTGTACGCTTTTCAGGAACAGACCACTGAAGACTCTGTGATGCTAAATGGCTTCGGTACGGTGGTAAATGCTCTGGGTAAGAGAGTAAAACCGTACTTGCCTCAGATCTGCGGTACAGTGCTGTGGCGTCTCAACAACAAATCCGCCAAAGTCCGTCAACAGGCTGCTGACCTGATTTCTCGCACAGCGGTGGTCATGAAGACATGCCAGGAGgAAAAGCTGATGGGCCATTTGGGTGTGGTGTTATACGAGTATCTGGGAGAAGAATACCCAGAAGTGCTGGGTAGCATTCTTGGAGCCCTTAAAGCTATTGTCAATGTTATTGGTATGCACAAGATGACACCACCTATCAAAGACTTGCTTCCACGATTGACTCCCATCTTAAAGAACAGACATGAGAAGGTGCAGGAGAACTGCATTGATCTAGTGGGCAGAATCGCTGATAGGGGTGCAGAGTATGTGTCTGCCAGGGAATGGATGCGCATCTGTTTTGAATTGCTGGAGTTGTTGAAAGCCCACAAGAAGGCCATTCGCAGAGCTACTGTCAATACTTTCGGCTACATCGCCAAGGCCATTGGTCCTCACGATGTGCTGGCCACGCTGCTCAACAATCTGAAGGTTCAGGAGCGTCAGAACCGTGTGTGCACAACGGTAGCCATTGCTATCGTGGCTGAGACGTGTTCGCCATTCACCGTGCTTCCTGCGTTGATGAACGAATACCGTGTTCCTGAACTTAATGTTCAGAATGGTGTCCTAAAGTCTTTGTCCTTCCTGTTCGAGTACATTGGTGAAATGGGTAAAGATTATATCTATGCGGTCACACCTTTGTTGGAGGATGCTCTGATGGACAGGGATCTTGTACACAGGCAGACTGCCAGTGCTGTGGTGCAGCATATGTCTCTGGGAGTGTATGGCTTTGGCTGTGAAGATTCTCTCAATCATTTGCTCAACTATGTTTGGCCAAATGTCTTTGAAACGTCTCCTCACGTCATCCAGGCTGTCATGGGGGCCCTAGAGGGTCTGCGGGTAGCAATCGGGCCCTGCCGGATGCTGCAGTACTGCTTGCAGGGGTTGTTCCATCCTGCTCGTAAAGTGCGTGACGTGTACTGGAAGATCTACAACTCCATCTACATTGGCTCCCAGGATGCACTGATCGCACATTATCCGCTTGTCTACAATGATGAGAAGAACTCGTATGTTCGCTATGAGCTGGAGTACTTCCTGTGAATATAACTACCCTTACATGtgcactctctcttttctcctaTATCTGTCTAATTCATGGTTTATAGGACTTggtccactttttttttatgttccctGGTAGGTTACAACCAGTACCACAGATTCTGCGGTCTaaaatttatttcttattaaagaacagaaaaatgtcgaaaaaaagaatgttaaaCGTGATGCTTTTAGGTCTTTGGATTagacttttctgtttttacagcGTGGCACCATGcacagtgacagtaaagatagtAGCAGAGTTTCTGAGGAATGTGATTTATCTTCAGTAAATCTTTTAACTAGAGACTTGTGTCCTGATCTGTCAAGTCCACTCTCTTGCTCAGTCACACATCTGTTCTTATAATGTTGCTTAGTTTGGCTGAATAAACATTTGTGTATTAAAAGTCA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0014032 neural crest cell development biological_process
GO:0030318 melanocyte differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104479 lncRNA downstream 38424 15642259 ~ 15644276 (-) True G70633
XR_006251775.1 lncRNA downstream 44264 15628883 ~ 15638436 (-) True LOC122351574
TU104406 lncRNA downstream 261123 15418999 ~ 15421577 (-) True G70581
TU104305 lncRNA downstream 406859 15269829 ~ 15275841 (-) True G70503
XR_006251729.1 lncRNA downstream 420024 15257688 ~ 15262676 (-) True LOC122351294
TU104518 lncRNA upstream 71099 15762383 ~ 15762669 (-) True G70660
XR_006251840.1 lncRNA upstream 256829 15948113 ~ 15953976 (-) True LOC122352066
TU104861 lncRNA upstream 426998 16118282 ~ 16120319 (-) True G70894
XR_006251709.1 lncRNA upstream 914083 16605367 ~ 16631420 (-) False LOC122351188
XR_006251710.1 lncRNA upstream 914083 16605367 ~ 16617024 (-) True LOC122351188
XM_043249079.1 mRNA downstream 1861 15657514 ~ 15680839 (-) True ankrd44
XM_043249081.1 mRNA downstream 1862 15657514 ~ 15680838 (-) False ankrd44
XM_043249082.1 mRNA downstream 1862 15657514 ~ 15680838 (-) False ankrd44
XM_043249191.1 mRNA downstream 55909 15525358 ~ 15626791 (-) False fgf14
XM_043248422.1 mRNA upstream 10631 15701915 ~ 15707664 (-) True hspd1
XM_043248898.1 mRNA upstream 25038 15716322 ~ 15728800 (-) True rftn2
XM_043249428.1 mRNA upstream 143255 15834539 ~ 15876097 (-) False satb2
XM_043249429.1 mRNA upstream 143255 15834539 ~ 15874885 (-) False satb2
XM_043249426.1 mRNA upstream 143255 15834539 ~ 15874885 (-) False satb2
XR_006251733.1 other downstream 283263 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 376725 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 1428924 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 1742832 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 1869373 13807822 ~ 13813327 (-) True G70261
TU104521 other upstream 80137 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 1125856 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 1125856 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 1544588 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 2878471 18569755 ~ 18569882 (-) True LOC122352185

Expression Profile