RNA id: XM_043249082.1


Basic Information

Item Value
RNA id XM_043249082.1
length 5934
RNA type mRNA
GC content 0.46
exon number 28
gene id ankrd44
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15657514 ~ 15680839 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAATACATTACGCAGAACATAAGCGAGAGGGATATAATATCTGAAAACGGTATCGCTGTGGATGCCACTGCTGTAAATGCGGATTGTTTACAGCAGCCCTCGCATCCTTTCCTCCCTCCCCTTTTCCTCTTTCCCGGAGCGCCGGAGCGCTGGTGGCGAGGCAGCGGCTAAAGCAGCCGCCGCTGACCGAAGATAGCGCCTGCAGAGCCGGCCACGGCCGACACATCACCCCGGGCCCCTGGAGGGTGCGATCCGGAGCAAAGCAGGAAGCAAGCTTTTGATGCCACATCATTGTGCAGCATCGTTCTTCCGTGAAGAAAAGCGCACAGCCACTTCTGGATTTTATTAATCTTCACCTCCAGGTCTTTTCAGGAGTTTGGATGTGCAGTTTCACATGATATGGCTGTTCTTAAACTAGTCGACCAGCCACCCCTCGTCCAAGCCATCTTTAATGGAGACCCCGATGAGATTCGTGTGCTCATATGTAAATCAGAAGACGTCAATGCACTGgATGCTGAGAAGCGAGCTCCTCTTCATGCAGCAGCCTTCCTCGGAGATGCTGAGATCACAGAGCTCCTCATTGTGTCAGGGGCGCGGGTCAATGCCAAAGACAACATGTGGTTGACTCCACTCCACAGGGCAGTGGCATCACGTAGCGAGGAGGCCGTTCGCGTGTTGATCCGTCATTCTGCTGACGTTAACGCACGGGATAAGAACTGGCAGACTCCGTTGCATGTTGCTGCCGCCAACAAGGCCCTGCGCTGCGCAGAGGTCATCATCCCGCTCCTGAGCAGCGTCAATGTTTCAGATCGCGGGGGACGCACCGCCCTGCACCACGCTGCCCTTAATGGGCACACAGAGATGGTTAGCCTTCTTCTggccaagggtgccaatatcaATGCCTTTGACAAGAAAGACTGCCGTGCACTGCACTGGGCGGCATATATGGGTCACTTAGATGTAGTGTGTTTACTGGTGAGTCAAGGGGCTGAGATCAGCTCCAAGGACAAAAGAGGATACACACCTCTACATGCTGCTGCTTCCAACGGTCAGATTGCTGTGGTGAAACACTTGCTCAGTCTGGCTGTAGAGATAGATGAAGCCAATGCCTTTGGGAACACCGCGCTGCATGTGGCCTGCTTTAATGGACAAGATGCAGTAGTCAGTGAGCTGATCGATTACGGTGCTAATGTCAGTCAGCCGAATAACAAGGGCTTCACACCTCTGCACTTCGCTGCAGCTTCCACTCACGGTGCCCTGTGTCTGGAGTTCCTGGTCAACAGCGGAGCTGATGTCAATGTCCAAAGTCGCGATGGGAAAAGCCCTCTTCATCTGACAGCAGTTCATGGACGATTCACACGCTCTCAGACGCTCATCCAAAACGGTGGAGAGATTGACTGTGTTGATAAGGATGGAAACACTCCCCTTCATGTTGCTGCTCGATACGGACATGAACTTTTAATAAACACTCTAATCACAAGCGGAGCTGACTGCACCAGAAGAGGAATACATGGCATGTTTCCTTTACATCTGGCCGCTCTGAATGCTCATGCCGACTGCTGCCGAAAGCTTCTTTCCTCAGGACGGAGGTATAGCATAATGTGCCCTCTCAGTAATGACTCGGTCCTGTCTGCAGGCTTCCAAATCGATACTCCAGACAACCTGGGGAGGACGTGTCTGCATGCCGCAGCTGCAGGCGGTAATGTGGAGTGTGTGAAGCTATTACTCAGCAGTGGAGCTGATCATAACCGCAGAGACAAACATGGAAGGACCCCTCTCCACTATGCGGCAGCTAGTCGACACTTTCAGTGCCTGGAGACTTTGGTGTCCTGCGGTACCTGCATTAATGCCACTGACCAGTGGGGGCGCTCTGCTGTGCACTACGCTGCTGCTTCTGACCTGGACAGGAGGCGGCGTGTGGTCCTGGAACCAGAGAGTGACGGAGTTCAAGCTGAGAGGGAGAAGGAGGCAGCTCTgTGTCTTGAGTTCCTGTTGCAGAATGGTGCTGGCCCATCACTCAAAGATAAACAAGGCTACAGTGCTGTTCATTATGCTGCAGCTTACGGCCACAGACACTGTCTGAAACTGcttttggaCAGAGATGAGAGCCAACAAGATGAGATGGAGAACAGCCAAACCAGAAGCCCACTGCATCTAGCCGCATACCATGGTCACGCACAAGCTCTAGAAGTGCTCTTGGAGGGTCACTGTGAGGTGGATCAGGGTGATGAGGTGGGTCGGACTCCACTGGCACTCGCCTCCCTCAGGGGCCACACTGACTGCTCTCTCACGCTTCTGAATCACGGGGCCTCGCCAAGAAGCAAAGATACTATTCGAGGACGAACACCAATCCACCTCGCAGTAATGAATGGTCATACATCTTGTGTGCGCCTCCTGCTGGAAGACTCTGATAATGCAGATCTGGTAGATACAGCGGACTCTCAGGGACAGACCCCTCTAATGCTGGCAGTAATTGGGGGTCATGTGGATGCTGTGTCTCTTCTATTGGAGCGCGAGGCCAGTGTGGACTTGGCTGATCATCAGGGTCTGACCGGTCTGCACCTGGGGcTCTTGTGTGGACAGGAGGAATGTGTTCAGTCACTGTTGGAGCTGGAGGCATCCGTGCTGCTGGGGGACTCCAGGGGTCGGACAGCAATCCACTTGGCTGCAGCGAGAGGTCACGCTTCCTGGTTGAGCGAATTACTCAATATTGCATGTTCTGAACCCCCGATACCTCCATTACGAGACAACCATGGATACACACCCTTACACTGGGCCTGTTACTACGGTCACGATGGTTGTGTCGAGGTCTTACTCGAACAAAGAGATTTCCATCACTTCGATGGGAACCCCTTCACCCCGCTGCATTGTGCTGTGGTCAATGACCATGAGACCTGtgccaatattttattagaagcCATGGGAACAAAGATCGTAACTTGCAAAGACTCCAAGGGCAGGACACCTCTCCATGCAGCTGCATTTGCTGGCCACATAGACTGTGTTCAGCTGCTTCTGGCCCATAATGCATCTGTGGATGACATTGACCAATCAGGGTGCAGTGCCCTGATTATGGCAGCGGAGAAAGGAAGAGTCGAAGTTGTAGAGGCTCTACTTACTAGTGCCAATGTGAACCTCAGTCTGACTGACCAGAAGGGCAATACAGCGCTCCATCTAGCCTGCAGTAACGGAATGGAGGAATGTGCATTGCTCATTCTTGGAAAACTTCCAGACTCTGCCCTCGTCGCTACAAACACTGCACTGCAAACACCTCTTCATTTGGCTGCTCGCAGCGGGATGAAGCAGACAGTGCAAGAGCTGCTCTCTCGTGGGGCCAGTGTTCAAGTGCTAGATGAGAATGCTCTGGAGCTCCTTCGCCAGGCTCCCTGCTGAAATCTTTGCCCCGCCAGGCCAAGAGCCCCCAAGGCCCCCGCAGTCCAAGGGACCCCTCCGGCCCCTCCAGTGAGGGCACGACCACCGAAAACGACTCAGACTCAGAGACATTTTGACCCCGGCTCCTTTTAAATGCGCCGGTCGTAGTTTTGAACCTTACAGAAGTTGTACAGATTTTTGATTATGGAGCTCAGCCTCTATAACAAGAGATTATGACATATAGCACACACGGTACGCTTTTGTTCTGACACATTTGTTTGCACAGGAGATTTTTTCGAAAGCCATTTTAATCACTTTAACACAGGTTGATTGATGTTGGATTGCCAAATGTCGACTGACTTCTCACACTTGAACGATGATGATGTAATGTGCGGAGTGGTGTGTCTTGATCTGTGGATTTTTGAAAGCACAAACCCTGTGGAAGAACAAGGTGAAGTCACCCTCATTTCACCCATGTTGTCACTGTGGGACCAATCAGGAAACAAGAAATCACATTTTTGGAACAACAGGGGGAATTGGTGTCACTGTTACCAACCtcacttaatatttatttgtaagaaaGGTTGGAATACACCACACAACTTTTCCACAGATTTTTGCCCTGATTTTTGCATCGCAGATTTGACATCTCGCACGTTTCCgtgtaattttgttgtgttcgAACGACTTGAAATTCTAATGGTGTGTGATTATcagccatttaaaaatgttttgagattGGAAAAGTTGCGTAgtgtatttcagttttaagaCTAGTTAGACTTAAtgtgaaatgatgaaaaatgcaaCACAAGTTCTGCATTTCCGAAGTCGTACTTTACACATTATATCTGACATGTGAATAGAAGGCTCTTAAGATTCATATTGCAAAAAGAGCACTTTTATTCCATTGAGAAAACTAAATTTCTAGGCCTTGATGGTCTAAACTTGCGTTTGACGCTTTTGGAGAGTGACACTTTGCCACTCGGTTCCTTCTCAGACATAGAGACAGTGTTCAAATAATACTTCTATTCAGGTTGAATTTTAAATTCTAGTGAGAGAGCGTAGCATGTCATGTCAACCAGGATGTTTTCAAGCCTGTACcgatatttattaacatttagatAACAATGGTACTACAGTTGTATGCACTTACGTATAGGAGTAAATGGGTGtctgaaggaatagttcacctgtAGATTATAATTCTGCCATTGTTTACTCGTGTCATTGttttttgtggaacacaaaagtaaaattattgGAGAATCTTAATGTGGCTCTTTCCACACACCGATGCTATCGTCTGCCaagctccaaaaatgacaaataaataccTCCAAAAGAGCTACGTACTGTATTCTTCTGCAGTCATAGAAAgctttgtgtgagaaagagGCCAAATGTAAGGCTGTAATCCACTGATTATATTTCCCCTCCGTGAGCTGTTAGTGAAATGAACAGAATTGTGAACAAATCAACCAATTTATCAAAAAGAACCaattcaaaagaatgatttgttcagtAATTGGACTGGTCCCAGCATGTAACAGCTCACCGAAGATAAGTTTATCAGTGaataataacttaaattttAGCCTGTTCCTCACATAAAACTATTATATTGCATCAAcagactttttcttttgtgtccCATGAACAGAAGCGGAAAGAGCAGCGGTTTGAAGTAATATGAGAGcaagtaaacaatgacagatttGTGAATTTGAGGTaaactgtttgtttaaaaatggatCTAGgactataattaataataaatatcacaGTCTTCTTCATTCTTTCCTTCTGAAATAATTTTCACTTGCACTGGTTGAATATCAATCCTTTTTGAACACAGATTTCTAAATATGCTTTGGGGGAGTGTTTGCAAGTCTGTTTCtttgcttttgattttaattatttgattctTGCTTCAAAGGACTGAGAGCTTTCAGCGAAGACGGTGTTTTAATATCTCGCCAGTGAGAAACTTtccaaaacaaatttaaaatgaaaatgtaaaccaCCATTTGTCTGTTTGCCTTTGTCCACAATGTGCCAGTTTCTCCACCGTGTCCAGTGCCTTGTTCTGCATTTTCAGAGTTTGTTAGATCACGTCAgtatttgtttgtatgtatgtagtGAAGCGTAATGGAAGTCTGAAAATGTGAAGATAAGTCTGGGTCACACCTGCCAATCGTAAGccgatgtttttttgttttttttaccaagtCCTGATGTTTGTGCCTACGAGTGTGTGatttacaatagaaaacagtcTTTGTACATATCAGCTCATGGACATTATCATCACCAGAGCAAAACTTGCACACAACTGTCTTATAAAGGAAGCACATGGTTGAATTCTTTTCATAAATGAGATGGATTGTGAGTGAAAGGATGCAGAAGAATGAGTCAAACAGtattataacagaaaaaaaagctttgaaatgTGTGACAATCTAGATTACGGTTTCCTCCATTCCAATGTTGAAGGTTCTTTGTCGGCTCAAGtttcttttataaaattgtacgactattatataaaatgttttaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104479 lncRNA downstream 13238 15642259 ~ 15644276 (-) True G70633
XR_006251775.1 lncRNA downstream 19078 15628883 ~ 15638436 (-) True LOC122351574
TU104406 lncRNA downstream 235937 15418999 ~ 15421577 (-) True G70581
TU104305 lncRNA downstream 381673 15269829 ~ 15275841 (-) True G70503
XR_006251729.1 lncRNA downstream 394838 15257688 ~ 15262676 (-) True LOC122351294
TU104518 lncRNA upstream 81545 15762383 ~ 15762669 (-) True G70660
XR_006251840.1 lncRNA upstream 267275 15948113 ~ 15953976 (-) True LOC122352066
TU104861 lncRNA upstream 437444 16118282 ~ 16120319 (-) True G70894
XR_006251709.1 lncRNA upstream 924529 16605367 ~ 16631420 (-) False LOC122351188
XR_006251710.1 lncRNA upstream 924529 16605367 ~ 16617024 (-) True LOC122351188
XM_043249191.1 mRNA downstream 30723 15525358 ~ 15626791 (-) False fgf14
XM_043249189.1 mRNA downstream 30798 15525358 ~ 15626716 (-) False fgf14
XM_043249192.1 mRNA downstream 44262 15525358 ~ 15613252 (-) False fgf14
XM_043249190.1 mRNA downstream 90887 15525358 ~ 15566627 (-) True fgf14
XM_043249236.1 mRNA downstream 167269 15425447 ~ 15490245 (-) True nalcn
XM_043249076.1 mRNA upstream 1862 15682700 ~ 15692615 (-) False sf3b1
XM_043249078.1 mRNA upstream 1862 15682700 ~ 15691284 (-) False sf3b1
XM_043249077.1 mRNA upstream 1862 15682700 ~ 15691141 (-) True sf3b1
XM_043248422.1 mRNA upstream 21077 15701915 ~ 15707664 (-) True hspd1
XM_043248898.1 mRNA upstream 35484 15716322 ~ 15728800 (-) True rftn2
XR_006251733.1 other downstream 258077 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 351539 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 1403738 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 1717646 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 1844187 13807822 ~ 13813327 (-) True G70261
TU104521 other upstream 90583 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 1136302 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 1136302 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 1555034 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 2888917 18569755 ~ 18569882 (-) True LOC122352185

Expression Profile