RNA id: XM_043249083.1


Basic Information

Item Value
RNA id XM_043249083.1
length 6874
RNA type mRNA
GC content 0.48
exon number 31
gene id LOC122351791
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18663351 ~ 18674738 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCAGTTCAcgaagaagagaaaacaacatcCTGTCGAAGTGTGACGAGAACAGCACCGAAGTAGTAGGATTCAGAAGACGGTGGTAATGACCAGCTGATTATCTCATCAGTAAATCTTAACAGTTGCTGTTTCAGCCGTCATGAATCCTTCAAACATCTTTGGTAGACCACAAACTGCCTTTCAGGCACCGAGCAACACTAATCAACCTGGAAACCCGTTTCAGTCCTTCGCCCAGCAGAACCCAGCACAGGGTGTTGGTTTTGGACAGCCCTCTGCTTTTAGTCAGCCAGCTTTTGGCCAACCAACACCACAGCCTTCTGTCTTCGGCCAGACACCTACTTTTGGCCAGACCGCTGGGTTATCGCAAGGATTGGGACAGAcatcttctttctcttttctggGAACAGCCCCGACCTTTGGGCAGTCAAGTTTGGGTCAAGGCACACTTGGATTTGGacaaccaccaccaccaccaccaccaccatcgtATTCTCAAGCTACAGGACAGAATCAGATGTCTGCCTTTGATCAGACCTCTGCTTTTGGCCAGTCGCCTGCGTTTGGTCTTTCCTCCGTTGCCTCTCAATCTCTGCCCAGCTTCAGCAGCACTGTTACCAACCAACCCAGTTTTGGTCAGCTTTCTGCCCTCTCTGTACCCACCGCAACACCCAGCACCACAACAGGGGGGAGGACTGATAATCCAACTGTTGGGAACCAATTTAGTTTCAAGCCACCCAACGATGCCGTTTTCAAACCTATTTTTAGTGTCAGCCCTGAACCTCCCAGCACAAATCTGTCTTCAGCCTCTGAAACTGATGGATCATCCAAACCTTTAACTAGTACTATGGAGAATTCCTCTAGTGGTTCGCTGTTCTCATGCGTAAAGCCGAGTGCTCTGGGCTTCAGCTTCTCACAGCCAGCAGCAGCTCCTTCTGTCACATTTTCTAATGCTAATTTTCCACAAAAGGAGACTCTCGGTGGTGGCAACAGCATTCAGTTCACCTTCTCTCAGCCAGCCAACCCTTCCAGCAGCAGTACACCTGCTTCTCAGCCCACGACTCCATCCACCTTCAGCTTCACAGCACAGAGCCTTCAGTCTCAGTCAGATAACAAAATACCTGCGTTTAGCGGTGCTGGCCCCTTTGGATTTGTAGTCCCAAAAACTGAAGCCCTACAGAGAACTGACGATAGAGCAGGTGATGGACAGAGCAGTGGAGGAGAAACAGCTTTTGTAAGTTTTGGCATAAAACGTAAGGAGGAGCCGGTTGATCCAAATGCATCTAAAAGCGATAGTAGTGAAGCTGGGGCAGATGGACCAAGACAACCTGCCAAACGGCCGCTGCTGAGAAGTCGTGTCCCAGCTGGAGGAATTTTCCGCAGTGCGTTGTCTGAGCTAATAAAATCCAAAGTCAGTCCAGTGAAGAGAGAAGATCAGCTTCCAGATAGACCCGATCCTCCCGGTCCAGGCAGTGATGTGGCCACTACACCTCCAAGATCTCAGGCTCCCGCAGTGCTGAACAAAGCGGAGGAAGTTTCACTCAAGCCTGAAGCGCAGACACACACTCCAGGTAGACGTGCCTCTAGAAAGGAGAGCACAGACAGTTTGGCTGGTCTCTCTCCTGCTGATGCCACTGTTATACAGTGCAAAGGCATCCCACCCAACCTCAACAAGAAAGACCTCATCATACAGCATTTTAGGGACTTTGGGAAAGTGCTTAAGGTGTATTGCAGGCCTCAGAAGAATCTGGCCATTGTGCATTTCCAAGATCATGTATCTGCAGCCAAAGccaaaaagaaaggaaagcaGTTCCAGAGGactgaaattcaaatattttggcAAAGAAAAAGGCAAAGTCCAAGTGAAAAAGCCGCCAGACCTTCAGAAGTTAAAGATGTAACAGGGGACCCCGAGTCTGGCTCCCCTAGTCGCAAACCTCTTCCCAGAGCAATGCCCATCAGCACCACAGGCTCCCTTGCTAAAAGCTCTCCAATCCAAAAATCATCTGTTGCTAAAACACTCCAGTTTGAGAGTGAGGCACCATTAGAGTCGGTCTCAGAGGAACGGAGCATAGAACGGCCTATTATTAACCTGCCCTCAGTACTGCAGCCTCTGGTTGGTCAGGTGGCTGAAACAGCAGAGGAAAGATACCGCCTCCTAGAGCAGAGAGACAAGATTTTACGACAAGCTCGACCCAAAAGAACAGACCTGGATATGTCCAAAGTGTTTGTGGGAACATGCCCTGATATGTGCCCAGAGAAAGAGCGGTATATGAGAGAAACCCGCAACCAGCTAAGCGTTTTTGAAGTTATTCCAGATACAGAGAAGGTGGATCATTTTGCTGCTGTCAAAGAGTACAGCAGGTCTTCAGCCGATCAGGAAGAACCACTCCCTCATGAGCTTAGACCACTTCCTGTGCTAAGTATGACTATGAACTACCTTGTAACCCAGATTATGGACCAGGGTGAGGGAAATTACCGTGACTGGTATGACTTTGTCTGGAACAGGACCAGAGGAATTCGGAAGGACATTACCCAGCAGCATCTATGTGATCCAGAAACGGTATCACTCATTGAGAAATGTACCCGTTTCCACATTCACTGTGCTCATCACCTCTGCCAGGAACCCATGATGTCTTTTGATGCAAAAATCAACAATGAGAATATGACAAAATGCCTGCAGAGTCTAAAGGAGATGTATCAAGACCTAGCCTCTAAAGAGGTGTACTGCCCCAATGAAGCAGAGTTCCGCCAATACAATGTGTTGCTTAAGCTCAACGATGGAGATATTCTTCGCGAGGTGCAGCAGTTCCGTAAAGAGGTACGGGAGTCTCGGGAAGTGGATTTTGCTGTGCAGGCCTTTGCAGCACTTAACAGCAATAACTTTGTACGGTTCTTCAAACTTGTGAGTGCAGCTTCCTATTTGAGTAGCTGCATACTTCACAGATACTTCAATCAGGTGCGAAGCAAAGCACTGAAAATCCTCAATGTGGCCTTTACTGTTGGATCCCAAAGATCCACCATTTTCCCAGTCGAAGACTTTGTCAGAATGCTCATGTTCCGCAATGGCACTGAAGCCACAGACTTTATTCAACAGTACGGCCTTACAATCAGTGATGGCATGGTAGAACTTAGTCGAACATCCTATCAGGAGCCTGATTTCTCCTTACCTCAGAAGAAGTCTGTGGTCATTGAGAAGAAGAGAAATGTTCTGATTGGTGAAGTGGTGAATGGTGGACAACTGCCCAACCCGCCCCAGCACAATCCTGTTTGCAGCTTCGATTCTAACAACAAGTATAGAGGAGACGGTCTGTCTTCTGAGCCTTCACCAGCTGCCTTGAAGGCTCATCCACAGAGGCAGGAGTTGAAGCCCTTGATGGATTTTGACTCCAGGCCTCAGCTCACAACAAGGCTTCTGGCTGAACCACGGCTGTTCGTGGACCACCCTGGCATGACAGAGCCTGTAAAACCTGACGATGCAGATGAAACCGGAGAGAAGAACCAAACACAATCAACTTTTCCTATGGTGCCACAGCTGGTTTTCCAACCCATATTAGCACCACAACCAATCCGACCTCCATCTCCTCCACCCAAACCAGAACCAGCGTACACAGATCAGGATATAATGGCAGAGGTGGATGCGGTGCTTAATGAGGTAGTGGACGCAGAGGTCTCTGATATAACCCATGCAGCTGCTGAATATGTGTCAGCAGCCCTCAGTGTGAGTGACAGTGAGTTAGAAGTAGTTGTGAGTGAAGTTTTAAATCAGCTGCTGAGGGAACTATCCACATCAGAGATCATGGCTGAGAAGGAGAGAATCGCAGAGGAGAAACGCAAGCAGGAAGAAGCCAGGCGGAAGGAAGCCTTTCTTGAGCAGTTCAGCGGTGAGCTTTGTGCTAAAATCAGTGATGAGGTGCTAACAGAGAGCATTAGAGCAACCGCAGAGAATGAATTAAGGCTTGCTTTAGAAGAAAAGGCAGCTTGTATCGCCCGCTGCTCAGCGGAGGAATGCGACAGCATAGTCGAGGAGACGCTGGCTGAGGAGCTGGCCGCAATGGCTCAAGATATCCTGGACAATGAATTGAGGCGCATCTGCAAGTTCATCAAGAGGTGGCGTGATGTTGTAGCTGTGCGTCGTCAGCTAAAGAGACAGATGCGTGGTTTCCCTGCAGCCCCTGGCTGTGTAGATCCACGATTCAAACTTAAGGCTCTCGTACCCAGTGCCCCTTCAAGCCCCTCTCTGGACCTCCTTGCCCAGGGGATGGTCAACCTGGGTAACTCTGGGAACATGGCAGTTTCCTGCACAAGATTGCTGAAAATGAGACAAGAAGCAGTTCATCAAATGAAAGTATCCTACTACTACAATCTCTTACTAAGTGAGCGTATATGGATGCCTCTTGATCTGCCCACTCTTGTGGCAGAAAGCACCCCTAATACACCAGAAAGAATCTTCTGGAAAGCCACGCTTCTATTGCCAAGCAACTGTGATAGTGACATAAGCTATGCCAGCAGgattCTGACAGACTGGCTTGAGGTTAAATTGGGTGGAGAAATCCAGTGcaaagagagcgagaaagaaCTCAAAGGGCAGCTGAAAACACTGTGCATTAGTCACAGCTTGGCAAATATCAGGGGACAGCCTCAGGAAGTTCACATTGCTATAAAAACATGTCATGGCCCTCTGAGTGCAGAAGACCAGTGTCTGCTGGAGGAACAGAAGGAGCTCCATGGTACCAACGCTCTGCTGATGCTACTTCCCCCTCTTAACAGTGCTGGACAggatgaagaggatgaggatgtgTCCCTGCTCTCTGCTCTCCTTCAGCTGAGGCAGGTGCAGCAGGCCAGCTGCTGGCACACTCCTGTACCATTGGTTGTGGTGGTTACTGGCGACCAAGAGGGCGGTATCAAAGATCATGGTTTAGAAGAAGCACTCATGTTGAATATTTTAGTCAAAGAGGGTCTAATCTCTGAATACATCTTCGTCCACATACCAGCAACCCTCACTGACCTGCAAGGCTCAGAGCAGATGAGTCATGTCATCAGGTGGCTTGCTGCTCGTTCTCCCACTGGACCAGCCCTGTCCTCTCAGACCCTGCTGCAGGTTGTTGAGTTAGGCCTGTGCCGTGAGTTCTACTCCAGACTACAACGAGACAAGCAAGAAAGGAATCACGCAGGTCTTCTGTCTCAGCACCCGGAGCCTATCGTGCAGCTCTGTAACACTGTGCTGAGTTTTCTAGCAGATGTGGTTTCATCAGAGCATCTGTCCGGTCTCTCCTGGCCACCTCCTGAATTCTCTCTCCCCGAGAACAGCGAGCTGATTCCTCATCAGGCTTGGAACTCTCCAGAACACCTAGAGTGGTTGAAGAGAACTATCCTCAGCCGGCAACTTCCTGAGTGGGATCTGCCTCCAATTAGTGCCTCCTGGCCCCATTTGTGTGCCACAATATTCCAGTACGTATCCCAGATCCCTTCCTCACCTTTAAGCCAACCTATTTTAATGTCCCGCCTGGAGAACCTGCTTAGAAGAGTGAACTACCAATACTTTCATGTGAGTGGCGCAGATGAGGATGACTATGAGACAACTGGACCATCCTTTCACGAAATTCCTTGGGACGACATTATAAGCCTGTGTGTAGAGCATCGTATGAAGGACTGGAGTTTGGAGACTCTGATGGCAAAAGATGCCCTCACGAATGATGGCGAGATTCttgtatattttaacaaaaacagcCTGAAGAGTTTCCAGCCGCCTGATAGCTGGATAGAAGCTGTGAAACAGACGTATCAGGAAAAACAGCAGGCTTCAGAAGTgtcaaaggtcaggttCCAAACCACGGCCAGACAATTCCCCAAACAGAAGCTGTTTCAGAGTCACAACAACACAGAGGAATGGTCTTCTGATTGTGATGCTGCACAAATTCCCATCTCACAACACTTTGAAAGGATTCTGTCTTCCATTCGCGATATGAACGCTGAGGGCCAGAGGATTGGAGAGCAGATACAGTGTCGGATTGAAGCAGATCCTTTACACCCTTCGTTTCCTCTTACCCTGACCTCCACCATCCACTCTGTGCCCGTAACCATGACTCCCTCCCGAAAGCGCCCTGTCTACATACAGgaaaggaaaggactCTTTGATGCTGACAGCACACAGAATCCCATAATGGAGCGACTTCAGCATACTCTCTTAACTGTTCAGGAGATGAATGCTGAGGGCCAGAGAATTGGAGAACAGATTCAGCGTAGGATTGAAGCGGATCATTtgtcctcttcctcttttcctcttttccttCCCTCCACCCTCCTCTCTGCGCCTCCCCTAGTTAGGACACCCTCTTCCAAGCGCCCTGCTGCTACCATCCACATACAAgaCGTGGAAGCAAAAGCTCCTGTTGAGAAGACATCTTGTGAAAAAAACAGGCCGGTATCTTTGTTCCAGCGTTTTCAGGACTTAAAAAGAGAGCTGTCAAGTCAGAAGGAGCAGGAACGCGTGTGTGACCTCAAGCTGAAGTGTCTTTTAGACATTGTAGAGAACTGAAGATGTTTCAGTATAACAGCAGCTGCTGAATGCCACGTCTTCCCAGTTTGAAAGAAAATATCTTTTGTCTGCCGCTTATTGGTCTcagaagcttttatttttgctgttttaaattttatattttttgataaaatgcTTAGGTCATGTGCCTCAACCATTAGATTTAATTCATTCTTAGTGTGTGTATCTCCTTTAACAGTAAGTACTTTAGaatttgttgattttgttttcatacatatttctttctttttgaataatagtttaatgtattttgttcaTCCCAGTGAttgttgtatttaatttttggtcAACCATAAAGATTGTTTTTATCAAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105574 lncRNA upstream 119358 18543774 ~ 18543998 (+) True G71334
TU105573 lncRNA upstream 122020 18540883 ~ 18541336 (+) True G71333
TU105571 lncRNA upstream 124656 18538480 ~ 18538700 (+) True G71331
TU105387 lncRNA upstream 632808 18028361 ~ 18030548 (+) True G71221
TU105314 lncRNA upstream 1020918 17641910 ~ 17642438 (+) True G71167
TU105770 lncRNA downstream 73173 18747911 ~ 18892052 (+) True G71442
TU105772 lncRNA downstream 142400 18817138 ~ 18892052 (+) False G71442
XR_006251757.1 lncRNA downstream 215185 18889923 ~ 18893969 (+) True LOC122351431
TU105801 lncRNA downstream 218813 18893551 ~ 18893849 (+) False LOC122351431
TU105813 lncRNA downstream 305575 18980313 ~ 18985811 (+) True G71457
XM_043249209.1 mRNA upstream 486 18659765 ~ 18662870 (+) True LOC122351850
XM_043249206.1 mRNA upstream 5646 18653071 ~ 18657710 (+) True LOC122351848
XM_043249208.1 mRNA upstream 10434 18649212 ~ 18652922 (+) False LOC122351849
XM_043249207.1 mRNA upstream 10434 18649231 ~ 18652922 (+) True LOC122351849
XM_043248379.1 mRNA upstream 20870 18635108 ~ 18642486 (+) True plcd4b
XM_043248163.1 mRNA downstream 413 18675151 ~ 18682202 (+) True lss
XM_043248184.1 mRNA downstream 7934 18682672 ~ 18689542 (+) True lmln
XM_043248797.1 mRNA downstream 17837 18692575 ~ 18708193 (+) True osbpl11
XM_043249398.1 mRNA downstream 46435 18721173 ~ 18733013 (+) True snx4
XM_043249454.1 mRNA downstream 59681 18734419 ~ 18740056 (+) True znf148
XR_006251742.1 other upstream 22176 18635106 ~ 18641180 (+) False plcd4b
XR_006251851.1 other upstream 43969 18611995 ~ 18619387 (+) False tfcp2l1
XR_006251852.1 other upstream 43969 18611996 ~ 18619387 (+) False tfcp2l1
TU105623 other upstream 110474 18550278 ~ 18552882 (+) False clasp1a
XR_006251866.1 other upstream 114749 18548481 ~ 18548607 (+) True LOC122352188
XR_006251718.1 other downstream 7934 18682672 ~ 18688242 (+) False lmln
XR_006251717.1 other downstream 7934 18682672 ~ 18688223 (+) False lmln
TU105802 other downstream 226891 18901629 ~ 18907047 (+) False cps1
TU105807 other downstream 242832 18917570 ~ 18920415 (+) False cps1
TU105976 other downstream 946546 19621284 ~ 19621493 (+) True G71585

Expression Profile