RNA id: XM_043249090.1


Basic Information

Item Value
RNA id XM_043249090.1
length 3035
RNA type mRNA
GC content 0.42
exon number 16
gene id itgb2
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22636895 ~ 22645747 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCAGCAACGTTCTTTCAGTTCTGAAGCTACTGTGTACTGCTTGAGGAACCCAGAAGACATTTCATAGCCATTTATGACGACTTTATCTTTCTGCGGCATTTCCATAGCATCAAGAAATGCTTCAGGCAGTGTGTCTGAGGGGCCTTCTTCTGTTGTTGGTGGGAAGACAGGTTTATACGGAGGAACAGTGTTTAAAAGCTTCAATAAAGTCATGTGATGACTGCATCAAGTCTGGGCCTGGCTGTGCCTGGTGTAAAGATTTGAATTTCACCAAGACTGGAGAGCAGGAAGCAGCACGTTGTGACACAGCTGCTTCGCTTAAAATAAAAGGATGTTCAGCCGATGGCATAGTAAAtccaaaaaatgattttttaaaaatatcagatAAGCCCCTGGTTGCTGGTAGTAATCCAGTGCAGATGCAACCACAAGAAATAGAACTTAATCTTAGACCAGGGTTGCCCCAAACTTTTCAACTAAAATTTCAAAGGGCAAAAGGCTATCCAGTTGATCTCTACTACCTAATGGATCTCTCATACTCCATGAAAGATGATTTGGAGAATGTGAAACAACTGGGAAATAATTTACTTACTGAGCTCACAAGAATCACTGGAGAAGCCAGGATAGGCTTTGGTTCGTTTGTCGACAAAACGCTTCTTCCATACACCGACACCAATGAAGCGAAGCTCCAACGGCCGTGCCCGGATAAAAATGAACCATGTCAACCAGCATTTGGTTTTCAGCATGTGCTTTCTCTGACAAATGATGGGGACATGTTCAGAAACTTGGTCTCCAAGCAGCATATATCTGGAAACCTGGACCCCCCAGAGGGAAGCCTGGATGCCATCATGCAAGTCGCTGCCTGTGTGAATAATATCGGTTGGGGAAACAGCACTCGTCTGCTGGTGTTGGCCACTGATGATGGCTTTCACATGGCAGGGGATGGAAAACTTGCTGCCATTCTGGAACCAAACAAAGAAACCTGTGAGCTGGTCAACAACATGTATAGCAAGAGCAACCTCTGGgacTACCCATCCGTTGGACAGATTGCTCGCAAGCTGGAGGAGCAAAACATACAACCCATTTTTGCAGTCACCAAAAAATTGGAAACCGTGTACACAGAGCTGAGCAAACTGATCCCTAAATCTGCAGTTGGAGTGCTTTCTGAAGACTCTAGCAACATTGTCAATCTAATTGTTGAAGCATACAACAACTTGACCTCTGAAATTATCATGGCTCATGAAGCTCTCCCAGACTTCATATCTGTGAAATACAGCTCGAACTGTATAGGCGGAGAAAACCTCAGTGACAAGGGGAAATGTGAGAATGTGAACATCGGTAAGGAGGTGACTTTTGATGTGACGGTAACAGTAGACAAATGCATTGAAAGCCAGAGCTTCCTTATCGGTCCGTTGGGCTTCAGTGAAAAACTGAAGGTGAACGTGCAGACTCGATGCAAGTGTGAATGTGATGATTCCAGTGAACCTCAGTCTCACTGTAAATTCCACGGCAGGATCATCTGTGGTAGCTGCAGTTGTGATTCGGATTACATAGGACAGCACTGTGAGTGCATACGAGGCCAAAAGGACGAGGCGTCATTGAAAGCGCAGTGCCGGAAGGACAACGGGACCGAATGCGAAGGCAACGGAGATTGTCTGTGCGGACGCTGCCACTGCCATACTACAGATGGCGGTGGCAATTTCTATGGCGAATTCTGTGAATGCGACGATGAGCACtgtgaaaaatataacaataaacagTGTGCAGATCATGGCAAGTGCAAATGTGGTACATGTGAGTGTGATCAAGGATATGAGGGCACAGCGTGCCAATGCCCAAAATCCGATACGGAGTGCAAGAACGATAATAGTATATGTCATGAGCGTGGGAAATGTATGTGTAACCGATGTGAATGCGGGAGAGGATACAAGGCGCCCTACTGCAAAACGTGTCCTACTTGCCAAAGTCCTTGTAAAGAGTCACGGAGTTGTGTGGAATGTCTGGCCTTTGGAACCGGTCTGTTTGAAAAGAACTGCTCCATAGCTTGTGGACATCTGAAACATACGATGGCTGACAAATTGTTCAGTAACGACTGTCgagaaagagacaaagaggGCTGCTTGATGTACTATGTAATGTCAGAACAACTTGGATTTGACAAGTATTTTGTCAGCGTCCTCAAAGACAGAGAATGTCCCGAGGGGCCAAACATAGCAGCTATTGTGGGAGGATCTCTGGCAGGTGTGGCATTGATCGGTCTCCTGATCCTCCTCATTGTCAAGGCACTTCTGTATGCAAGTGACCTTAGAGAATGGAAGAGAtttgaaaaagacagaaaacatgaaaaaacatctGGTACCAACCCGTTATTCCAGAATGCTACAACCACAGTTCAAAACCCAACATTTTCTGGAGATTCGTGAAAACATTTGGCGGGGTGAATGCGTCATTCAATAACATAGCTTTAACTTTTGTTAATTTTCAGTGAGTCATTAGaagtcattttatattatagaagACATATTATTTGAAAGTTTGACattaaaaaaggctttttcatattttgtgtaatgcataagaaaattgttttatttttgtatgcagaaaaatatatgaagAGAAATCAGATTTTATACTTGTTGAGCTTTGATGACAGTGAAATGTAATAGATTGTGGCAGTTCTGCTGCTGAAAAGATATTTGTCTCTGAAATGGTAAAAACGTTTTTCAAACACACGATATACTgatattgtgtgttttgtatgtttacaaatgcaaatatcCGAAATCTGAATAGAGCCCCCTGTACTGCATTTTACAGATTTCTCAtcataaatcattaatattgaACATATAAGTTGGCTTTCTACGTCAAGATAAGAATTGTAACCTGAAAATTTGCTTACAGCTTTGCACTGTAACCAGCTTGTTGGACTTTCAAGCTTCATAACAATTAATCATAAGTTATAAAAACGTGTGTGTTTGAGGGCTATGTACATGTCTTAAATATAAAGTTGGAATTACTGTACTTTCA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K06464 ITGB2, CD18; integrin beta 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251847.1 lncRNA downstream 48644 22585744 ~ 22588251 (-) True LOC122352087
TU107400 lncRNA downstream 56123 22579803 ~ 22580772 (-) True G72583
TU107338 lncRNA downstream 178137 22311078 ~ 22458758 (-) True G72535
TU107333 lncRNA downstream 191400 22297050 ~ 22445495 (-) False LOC122351746
TU107436 lncRNA upstream 6755 22652502 ~ 22653575 (-) True G72605
TU107432 lncRNA upstream 12570 22658317 ~ 22658828 (-) True G72603
TU107440 lncRNA upstream 21150 22666897 ~ 22667111 (-) True G72608
TU107450 lncRNA upstream 54982 22700729 ~ 22701019 (-) True G72615
TU107487 lncRNA upstream 182351 22828098 ~ 22891619 (-) True G72646
XM_043249493.1 mRNA downstream 898 22622058 ~ 22635997 (-) False vil1
XM_043249492.1 mRNA downstream 2909 22622058 ~ 22633986 (-) True vil1
XM_043249032.1 mRNA downstream 16107 22616864 ~ 22620788 (-) False LOC122351761
XM_043249031.1 mRNA downstream 16107 22616864 ~ 22620788 (-) True LOC122351761
XM_043249030.1 mRNA downstream 21114 22611358 ~ 22615781 (-) True LOC122351760
XM_043248246.1 mRNA upstream 256701 22902448 ~ 22906312 (-) True agr1
XM_043249636.1 mRNA upstream 360091 23005838 ~ 23244247 (-) True hdac4
XM_043249637.1 mRNA upstream 360091 23005838 ~ 23111800 (-) False hdac4
XM_043249638.1 mRNA upstream 360091 23005838 ~ 23111599 (-) False hdac4
XM_043249532.1 mRNA upstream 635767 23281514 ~ 23290139 (-) True LOC122352042
TU107329 other downstream 125588 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 329882 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 413228 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 910075 21709288 ~ 21726820 (-) True G72363
TU106615 other downstream 2133005 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 1284460 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 1310472 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 1574775 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 1585488 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 1625708 24271455 ~ 24280708 (-) True G72978

Expression Profile