RNA id: XM_043249095.1


Basic Information

Item Value
RNA id XM_043249095.1
length 5488
RNA type mRNA
GC content 0.43
exon number 16
gene id rpgra
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10149875 ~ 10160006 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctttttttctgttgccaGGGCAACGTTTACTTCCGGTAACTCTTCAACAGGGAACAGTTGACAGTTCAGGAATGTCATCTGCAGAACAAAGGTGTAGGAGGTGATGACAGGAGAAACAGACACAGAAATACCAGAAACAGGTGCTGTATTCACCTTTGGAAAGAGTAAAATAGCAAACAATGTACCCAGCAGATTATGGCTAAAGAATGATATACCTGTGCAAATCTCATGTGGACAGTCACACTCTGCCTTTGTAACAGAGCAGGGCcgtttgtttgtgtttggaaATAATAACAGAGGTCAGCTCGGTCTTCAAACCAAAGGACCGGTGAATAAACCGACCTGTGTTAAAGTTCTTAAAGGGGAAAGAGCTCAGTTTGTTGCCTGTGGGACTGTTCACACACTCGTAAGCACCTCACAAGGGGAAATTTTTGCAGCTGGAGGAAACAGTGATGGACAGCTCGGACTGGGCCACTGTAACGACAGCGTTTCTTTCCAGCGGCTCCACCCCTTTTGTGACAATGCTCCAATCAAATTGCTCTCTGCAGGCGGCCACACCTCTGCTGCACTTACAGAGGATGGCAGGCTTTTTCTGTGGGGTGATAACTCTGTTGGTCAGCTTGGTTTGGGGAATGACAGCCATGCCTTATTGCCTAAAGAGCTGAAACTAAAACAGTCAATTCAGTGGGTCTCGTGTGGATATAGACACTCAGCTCTGGTCACAGATAACGGTGATGTTTTCACTTTCGGGGAGAGTGCAGATGGACGACTGGGTCTTTCTGCTCATCAGCTGGCCAACCACAGTCATCCTCAGCGGGTTGAATCTCTGCACGGAGTGCTGCAGGTGGCATGTGGAGACAAGCACACACTAGCTCTTACAGAGAATGAGTTGTATTCTTTTGGCCGTGGGGAGTTTGGGCAGCTGGGCTTGGGGACACTTATGTTTTTAGCAGACACACCTGTTGCTGTCGGCCACTTCAGGAAAGGCAGGGTCAGTCATGTCACATGTGGTGAAAACCACAGTGCATTAATAACAGACAGTGGTCTTCTATATACATTTGGAGATGGCCGTTATGGGAAGTTGGGCCTTGGAGATGAGAATTTCACCAATCAGTTCAGTCCAACTGTATGCCAGAGGTTCTTTGATTACTCAGTCATGTCTGTGGCCTGTGGTTTCAGTCACATGCTGGTTTTCGCACGGCCACGGCAACAGGAAAGTGAAGAAGTTTGTTTAGAAGATGAAGATGTTACCTACTCTTACCTGGACAGGTGTTACACCTCAATGTTACAGGGGCAACCTTTAGAGCATATTCCAGACCCAGCACCTGCTCTAGTCTCACAACCCACCTTTCTCCCCTCATCTCTTCCAACTTCTCACCGCTGGAGCCTATCAACACGTGCCAGACGAAGACAGAGGgagagCTCACCTGCACAGTTTGGCCCAGAATTTTGCAGTCTCCCTCCTCCTACAACTGGCTTTACTGCACTAGCCCTGACAGGCAACATCATACAACCCAGATCTCCCAGAGACACTCCTAAACGCTTCAAAACTGAATCTGATTCTTCCTCAATCACACTGCCTGTCATGACAACACCAcTCACACAAATCACAAAGAAGAATGATGACTGCCATAGTGTTGGAAGATCTGAAAACAGCATATCAGACAATCATTCTGGCATGGTAGAGAATATCCCTCAACATGCTCCCCCCACCGAAGTACATGGTGCTTATGTTTCTCCACCATCAAGCAATCTAAAAAGCAAGAAGGCCAAGTCTGGAGATTTAAAGAACCCTGCCATGGCGGAAGAACATTCTTCTCTTACAGCATCACAAAGCAAaatacaaaccaaaacaaacaaaaaaaccatccagagtacaaataataaatctaaaagtcAAGCAGTAGACATCAGATTATCTTCAGATAGAATATCAGCTAAGGAAAATGAGGGAAGCAGTGAAACATGCAGTACTAATACTGATCCAAGGGACAACATTTCAGAAACAGACAAATATAGTACGGTTCAACACGCAGAGTCCAGAAGTCAAGAGGTCTCTGCTCTTTCTGAGATTGAGAAGAAGACCAAAACAAGCTCAATTAAAAGTCAAAAGACTTTCTCCAGAAGTTCTCCATTTCAGGAAGTTGGACAAGTTAGAACAACGTCCACAAAAGAGGTGAAAACTCCCAAAATAAAAGAGATGGGTATTCCAGTAAGAGCTACAAAAAGGGTCAAGTCACCAGTCAAGGTTCAAAATGTGTCCTCCGGCGCTAGAGAGGTTAACAAAGTTGAATCAGTGCCTCAGGCAGATGCTCAAAGAGACATCAAGCCATCCCCTGGAAATGCTCAAGAGGTCAGAACAAAACcgataaacaaacaagaaaagagAGTCTCAACACCAGTCAAGATTCCAGCTAAAATACAAAGCAccccaaaaaaaggaaaagaaaaaatttatGTTGACACAGAAGAAAGACTAAGTGAACTTGCaccaaagaaagcaaaaaagaagAGATCAGATGTAGAAAGAGCCCCAAAATCAGAAACAGCTTCCAAAACATCCAGCCCTCAATCAGTTTCTATCCCCACACAAACATCTAAAGCTGAAAAGCAAAAACCTGTGGAGTCTAAGAACTCAGAATTTGAGCTTAAACATGCAATTCCAGCAAATGAGAAAACTGAACTCAAAAAGGGAAATGATAGTAAAATACCTCAGAACTCTGATATATCATTTCCCCCAATTAAGAACCAAAAATCAGGaagaactgcaaaaaaaagacaatcagCTTCTAACTTGCATTAAGCAAAAAATAGTCAGTCGCCCACTGATAAAGTGCTTACTGAACAGAAACATGAATTTCCATCTATTAAAAGCTTAGCTCCAGAAAGAGGCCACTCATTTTCCAGTTTATGGTCCAATAACCAATCGGCAACCAATAAATCTGCCACCAAAGAAACCGAATCATCATCTGGTAAGTTATTGAGTCCATCAAGTTCATCACACCACAAGCAgtcacaacaaaaaataaataaattatccaAAAAAACAGCTGAACCTAAAGAGCCAGACAGGAAGCCACATGCAGAGCAGAGCATTATGGGTAGTGTAGTTTCCTCACTACCAGCCATGGCTATGGCAAGTGCTGCACCACTTCTGATAAAAGCAGCTGAAGTTCTTTCTGAACCCCAACCAGAACCAAGTATTCAAATGTCCTCACATGCATTAGTGTCCAAGGAAACACCAGGAAGCAATATCTTGCAAGAACAAGAAGTGGAACAGGAAAGCACCGTTCAGGATGTATCAGCAATCGAGGAAGTTGATGACAGCATAATTGAACAGCAGATTACACAAGATGAACAAAATGAGCTAGTTTCAAAAGAAACCGAAATGTGGGTGAGTGATGATGAAAAAATACAGGAAGAAGAACATGTCAAGGATAGtaagacagagagaaaggaagagggAGGTGAAGAAGAGAGTCTCGCTGAGGAAGAAGATGAACTTGAGGGGGTTGGGCAGGGAGAGGAGAGTAGTGCTgttgaagaggaagaagaaagagagagtgataATTATGAAGATAAAGGAGAGAATACTCAACAGGGAGAGGAGGAaaatgaagaagaggaggaggaagaagaaggtGAGGCAgcaggagaggaagaggatgacAGCAAAAGCAGACAGAGCAGCAGAAGTGAGGGAGGGATGAGTAAAGGTGAAGAAAGTGGAGATGAGACTGAAAGAGAAGAAGGAGAGCAGAGTGAGGAACAAGAGAAAGAGGAGATTGAGGACAAAGAAACTGATGAAaaggaggaagatgaagagagTGGTAATGAAGACAAGGAAGAGGAGAGGGAGAGTGAGGTGGAAGACGAGGAGAAAACAGATGCAGAGGAGGAGCAGGAAGGAGAGAGCAGTGATGAAGAGAAAACTGATGAACAATATGAAAGTGAGAGATCAGATGAAGAGGAAGGAGACAGTGAAGAAAAGGATGAGATtgaggaagaggatgaagagaATGAGACAGTGGGAGGAGAGGGAGAACAGGAAGAAAAGGAGGAAGAAGAAagtgaggaagaggatgagACAGTGGAAGGAGAGGAAGAACAGGAAGAGAAGGAGGAAGAAGATGaggaaaataatgaaaaattgaaAGACAAGAAAGATGGGGTCACAAACAAGAGTGAagaggagagagtgagagaagaagaagaagagaaacagAATGAGGTGGAAGCTGAAGATGAGGACAAAATGTCagagacagatggagaaaaaCAAGAAGGGAAAGAACAGattgaggaagaggaagaaattGATACAGGTGAAGAAAAGTTTGGAGAAAAAGAGAATCTTGACGTTTTAGAGACACAGGAAACAGAGAGAggagatgaagatgatgaaatgGAGGAAGAAAATAATGCAGAAGAAAGTGGAGATGAGGAAGAAGCAGAAGAGGACGAAATAGACAAGGGGGacgaaaataaaacaacagagagAAGACAGAGGGAACAGAGAGAAACTAATGAGGAAGAAGGGGAGGGAGGTGAAGAagtagaagaagaagaggaggaggaggaggaggagaaagaaattaGTGAGGAAGAAGAACAGGCAGAAGagagtgaggaagaggaggaagaatcTGACCAGGaagaaaagaatataaaaacagagacaaacaggAGGAAACAGAGAGAATCtagtgaagaagaagaagaggaagaagagagtgaggaagaggaggaagaaaccaaacaggaaaaaaagaatataaaaacagagacaaacagaaGGAAACAGAGAGAATCTagtgaagaggaagaggaacaggaagaagagagtgaggaagaggaggaggaagaaatagagcagaaagaaaagaatataaaaatagaagctagtgaagaggaagaagaagaacagagtgaaggtgatgaagatgaggaggaggaggaagaaacagagcatgaaaaaaagaatattagaGAAGAGAAACATGGAAGCAATGAGGAAGAAGAACAGGAGGAAGAGggtgaggaagaagaggaagaggaagaagctGAGCTGAAAAAAGAGAACATAAGCAAGACAAATGAGAGGAAACAGAGAGAAACCagtgaagaggaagaagaagaggatgaagaggatactgaggaagaggaggaggaaggggaAGAACAAGAAagtgaggaggaagaagaaggcgaggaagaggaggaggaagaagaaaagaCCAAAAAAGTACCAAAGCAGAGAGCCAAACCAGAAGTGTTACCTCCACGAAGACAGACGAGttcacagagagacagacagaagagcAGACAAAGACATCAACAGAATGTCAAAGAGAAGAGACAAACAGATAGTGGTGCTCAGGACCCTCAGTTCTGGAACAATGTCCTGCCACAGTATCTAAACCttaaataatacacaaacacagagaatGTGCTCGATGGATGTTGGAGAGGTTAACACATTTTGGT

Function

GO:

id name namespace
GO:0072001 renal system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102297 lncRNA downstream 11116 10136649 ~ 10138759 (-) True G69168
TU102250 lncRNA downstream 39632 10108975 ~ 10110243 (-) True G69136
TU102268 lncRNA downstream 62853 10085433 ~ 10087022 (-) True G69147
TU102062 lncRNA downstream 204073 9913086 ~ 9945802 (-) True G69018
TU102048 lncRNA downstream 258279 9890651 ~ 9891596 (-) True G69004
TU102283 lncRNA upstream 11763 10171769 ~ 10174858 (-) True G69157
TU102286 lncRNA upstream 13930 10173936 ~ 10242212 (-) False G69157
XR_006251782.1 lncRNA upstream 93927 10253933 ~ 10263447 (-) True LOC122351639
TU102379 lncRNA upstream 266221 10426227 ~ 10426465 (-) True G69223
TU102394 lncRNA upstream 284287 10444293 ~ 10444641 (-) True G69228
XM_043249103.1 mRNA downstream 634 10140293 ~ 10149241 (-) False srpx
XM_043249105.1 mRNA downstream 656 10140293 ~ 10149219 (-) False srpx
XM_043249102.1 mRNA downstream 1023 10140293 ~ 10148852 (-) True srpx
XM_043249104.1 mRNA downstream 1024 10140293 ~ 10148851 (-) False srpx
XM_043249101.1 mRNA downstream 48147 10098080 ~ 10101728 (-) True LOC122351802
XM_043248805.1 mRNA upstream 66381 10226387 ~ 10235671 (-) True tfg
XM_043248804.1 mRNA upstream 66381 10226387 ~ 10235664 (-) False tfg
XM_043249349.1 mRNA upstream 76292 10236298 ~ 10237964 (-) True jagn1a
XM_043249420.1 mRNA upstream 79291 10239297 ~ 10247492 (-) True col8a1a
XM_043248859.1 mRNA upstream 118852 10278858 ~ 10284622 (-) True tmem30c
TU102057 other downstream 239697 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 1808860 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 2055028 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 2131770 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 3001255 7070985 ~ 7148620 (-) False LOC122351350
XR_006251819.1 other upstream 273501 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 273501 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 273501 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 355266 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 520152 10680158 ~ 10686627 (-) False mrasa

Expression Profile