RNA id: XM_043249099.1


Basic Information

Item Value
RNA id XM_043249099.1
length 2486
RNA type mRNA
GC content 0.39
exon number 11
gene id LOC122351801
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10092350 ~ 10096244 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGCATTTAACAGCAGAGGCGTTACACACCCAACACTTCCTGCTTTCATTTCATTCGTGTAAACCGACCGTTTCCTTTTCTTCTCTCAGAAGCGCTACAAGCGCTGGTACTGGACTGTTGTTTACAACGAATATGGCAGTTGCAgctgAACAAACCATTGCCCTCAGTGCACGCAGTCTCCCGGGGCCACACGTAAAGAACGTGCTATTTACAGTTTCTTACCCATTTGTGAAGCCAAATCTAAGGGACGAGCAACAGCAGGTTTTTTTCTCACAGGACTCTGTggaaatattcaaaacatttggGAAAGCCTGTCTAAAGagtttaaaaaaatgtgcctGCAAAAGTACTGAGCAGAAAGACACCTTAACTGTTGATGAGTCAAAGCAACTCATCAGAGAGCTGGCTGCTGAACTGGACAGAGTGATACAGagaaagaaatgCCGCTTGATGTCAGGGAAGTTGAGAAATAAAGGATCCAAGGAGGAACAGCagtattattttttgcagtgggcaGAAGAGCTTGAGCACttgcaaacaaaagaaatagaGGAAGAACAGACACCACAAACCTTTTCAGAGAATGTTTGGGACAGAGAAATGAAAGTAAAGAGagccaaaaaaatgttgtgcaaCTGGTCTTggaagctaaaaaaaatgaaacagAATTCAGTATGTCTGGAGGGTGAATGTGAAGAAACTCTGAGGGATCTTCACGGACAGTGGAAAAAGCGAGAATCCAGCATACTTCCAGTAATGGACTGGATGATGTGGACTGTGCTGCAGTCAAAAAGCTCTGAGAATTCAGCTCCTAAACAGTGGGTGAAGAATAAACAGGGCTCAAAAAATTCAGCTGGACTGCACATTCCTAACGCAGTTTGGAATTGgattacaaaattaaaagCTGATGTCAttctggatccaaacacagccaaCCCGGACCTCCAAGTCTCTGAAGATGGGAAAtatttaatagcaaaaaaacacacaggtcTGGATTACTGGAGAGGGTTTCAAAGAGAGCGATGTAAATTTGATGGTTGGACTTGTGTCCAAGCTAAGGAGGGTTATAATGCAGGTAGACATTACTGGGAGGTCGATGTAAAGGGCAAATGTGAGTGGCGTGTGGGAGTGGTGAAGGAATCTGCCCCTCGGCATGGGTATGTCACAATGAATACAAAAGCAGGATACTGGAATCTGCGTCTGCAGCTGGGAACTTTAATAGCTTTGACTGAACCCGTCACTAAACTCAATATGCTGAAACCATGTAAAATAGGAGTTTATCTTGACATAGAAGAGGGCCATGTATCCTTCTATGATGTACAGAAAAGACAACATATCTACACCTTTAAGACAGAATTTAGTGGGACAGAAAAGATTTACCCAATGTTTGGCACTGTTGAGACAGACACAGCATTGGTTATTTcatcattaaatacatttctaaatataaaccacaaaaaataaaaaaaaatatgggcCCTCTAAGGGCTCTGATGCAAGACGCAGTGCAAGCATGTGTGCTCGTTTCACTCCGAGGCAGTTCTCATTTTCCAGTCCAGATCGGCCACGTAATTTAACTAGCAAATGTATCTGAGACCATTTGTGGGTGTgctggtctaaaaaaaaaagttgcgtTCAGGCGTATTGATGGCACATTTCTATTTTGAGAAACTTAAAATAGACTGCGCCACAGACCAACTCAAACCTGGTCAAAAGTCAATGGcgcagtatttttttcttattttaaagagtGTTAAGTAGAAAATGCACCTGTGTCATATGCCAGTGAGGTGGCTCTGGGGCTGCCAAATCAACATCTGATTGTAAATAGCTATCTATAATTAGAGTAGCATATGGTTGCTGGTTCAGGTTCttaaatgaaatcataaaaaattatCCTTACATTAGAAAATTACATCTGGCGATTGAGCTTGACCGCAGGGTCAGAATTAACGTGCTTCCTATGGCgagcatttattttactttgcttGGCAGTTGAATCTAGTAAAATAGATTACAaaagttattaataaattactgataaatgtaaaattacctGTCAAAAATTACATGCTGtaaattatttgcaattttattacattgtacAAGGAttgaacataaaaaattacCCAAATTGCATAAAAATCTATTCCAAATGACACTAAAGTAAATTACACATATAAATCAtaattgaatataaatgcacagaaaACTGCCAATCTGGGACATATATCTCAAATGGAAAACTTCTGTATTTGTGTTAcagtttttgttggttttggtttcattttctcctatgttcctgttttttcttattttgtttaccAATGAGTTTCCACCCATGTCTGCCCacctgtttctgttctgcctAATTGTGTTTCAGccttttctgtttaataatttttgttcaTCCTTAAAATAACTAAAGTATGTGTGCTTTTTGACTGCTGTTTTTGTTGCAATTAAACTCTACTTAATTGGAA

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0001882 nucleoside binding molecular_function
GO:0001883 purine nucleoside binding molecular_function
GO:0032549 ribonucleoside binding molecular_function
GO:0032550 purine ribonucleoside binding molecular_function
GO:0032561 guanyl ribonucleotide binding molecular_function

KEGG:

id description
ko03070 Bacterial secretion system

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102268 lncRNA downstream 5328 10085433 ~ 10087022 (-) True G69147
TU102062 lncRNA downstream 146548 9913086 ~ 9945802 (-) True G69018
TU102048 lncRNA downstream 200754 9890651 ~ 9891596 (-) True G69004
TU102035 lncRNA downstream 419449 9672572 ~ 9672901 (-) True G68994
TU102028 lncRNA downstream 437783 9654116 ~ 9654567 (-) True G68988
TU102250 lncRNA upstream 12732 10108975 ~ 10110243 (-) True G69136
TU102285 lncRNA upstream 21550 10117793 ~ 10172985 (-) False G69157
TU102297 lncRNA upstream 40406 10136649 ~ 10138759 (-) True G69168
TU102283 lncRNA upstream 75526 10171769 ~ 10174858 (-) True G69157
TU102286 lncRNA upstream 77693 10173936 ~ 10242212 (-) False G69157
XM_043248260.1 mRNA downstream 21465 10060318 ~ 10070885 (-) True gja5a
XM_043248468.1 mRNA downstream 34590 10051625 ~ 10057760 (-) True acp6
XM_043248247.1 mRNA downstream 98878 9990190 ~ 9993472 (-) True LOC122351281
XM_043248562.1 mRNA downstream 182242 9908191 ~ 9910108 (-) False LOC122351483
XM_043249536.1 mRNA downstream 288758 9677254 ~ 9803592 (-) True igsf3
XM_043249101.1 mRNA upstream 1837 10098080 ~ 10101728 (-) True LOC122351802
XM_043249103.1 mRNA upstream 44050 10140293 ~ 10149241 (-) False srpx
XM_043249105.1 mRNA upstream 44050 10140293 ~ 10149219 (-) False srpx
XM_043249102.1 mRNA upstream 44050 10140293 ~ 10148852 (-) True srpx
XM_043249104.1 mRNA upstream 44050 10140293 ~ 10148851 (-) False srpx
TU102057 other downstream 182172 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 1751335 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 1997503 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 2074245 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 2943730 7070985 ~ 7148620 (-) False LOC122351350
XR_006251819.1 other upstream 337264 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 337264 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 337264 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 419029 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 583915 10680158 ~ 10686627 (-) False mrasa

Expression Profile