RNA id: XM_043249101.1


Basic Information

Item Value
RNA id XM_043249101.1
length 2193
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC122351802
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10098080 ~ 10101728 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTAACAGCAGAGGCGTTACACACCCAACACTTCCTGCTTTCATTTCATTCGTGTAAACCGACCGTTTCCTTTTCTTCTCTCAGAAGCGCTACAAGCGCTGGTACTGGACTGTTGTTTACAACGAATATGGCAGTTGCAgctgAACAAACCATTGCCTTCAGTGCAGGCAGTCTCCCGGGGCCACACGTAAAGAAAGTGAGATTTACAAATTCTTACCCATTTGTGAAGCCAGATCTAAGGGACGAGCAACAGCAGGACTCTGTGGAAATATTCATAACATTTGGGAAAGCCTGTCTAAAGagttttaaaaaaCGTACCCGCAAAAGTACTGAGCAGAAAGACACCTTAACTGTTGATGAGTCAAAGCAACTCATCAGAGAGCTGGCTGCTGAACTGGACAGAGTGATACAGagaaagaaatgCTGCTTGATGTCAGGGAAGTTGAGAAATAAAGGATCCAAGGAGGAACAGCagtattattttttgcagtgggcaGAAGAGCTTGAGCACTTGCAAACAAGGAACAAGGAAGAACAGACACCACAAACCTTTTCAGAGAATGTTTGGGACAGAGAAATGAAAGTAAAGAGagccaaaaaaatgttgtgcaaCTGGTCTTggaagctaaaaaaaatgaaacagAATTCAGTATGTCTGGAGGGTGAATGTGAAGAAACTCTGAGGGATCTTCACGGACAGTGGAAAAAGCGAGAATCCAGCATACTTCCAGTAATGGACTGGATGATGTGGACTGTGCTGCAGTCAAAAAGCTCTGAGAATTCAGCTCCTAAACAGTGGGTGAAGAATAAACAGGGCTCAAAAAATCCAGCTGGACTGCAGATTCCTAACGCAGTTTGGAATTGgattacaaaattaaaagCTGATGTCAttctggatccaaacacagccaaCCCGGACCTCCAAGTCTCTGAAgatggaaaatatttaatagcaaaaaaatacacaggTCTGGATTACTGGAGAGGGTTTCAAAGAAAGCGATGTAAATTTGATGGTTGGACTTGTGTCCAAGCTAAGGAGGGTTATAATGCAGGTAGACATTACTGGGAGGTCGATGTAAAGGGCAAATGTGAGTGGCGTGTGGGAGTGGTGAAGGAATCTGCCCCTCAGCATGGCTTTATCTCAATGAACACAAAAGCAGGATACTGGAATCTGCGTCTGCAGCTGGGAACTTTAATAGCTTTGACTGAACCCGTCACTAAACTCAATATGCTGAAACCATGTAAAATAGGAGTTTATCTTGACATAGAAGAGGGCCATGTATCCTTCTATGATGTACAGAAAAGGAGACATATCTACACCTTTAATACAGAATTTAGTGGGACAGAAAAGATTTACCCAATGTTTGGCACTGTTGAGACAGACACAGCATTGGTTATTTCATCATTAAATACATGTCTTaatataaaccacaaaaaataaaaaatatgggcCCTCTAAGGGCTCTATCATGCACCTGGTGCAAGACGCAGTTCTCATTTTCCAGTCCAGCTCCGCCACGTAATTTAACTAGCAAATGTATTAgcaaatgcagtatttttttttgttattttaaagagtgtTAAGTAGAAAATGCACCATATGCCAGTGTCATATGCCAGTGAGGTGGCTCTGGGGCTGCCAAATCAACATCTGATTGTAAATAGCTATCTGCCATGGTGCAAGCACAACTTCCATTTAAAGGGAATGGGAGACGACACTCTGATTGGTTTATTAAACGTTACGCCCAAAAAACACCCATTACTTAAGAGAATCGGGACAACTAACTTTGACTATGCGCACAGACCTCTTTCCTGTtgataaaatagcaaaaatgtttGGGTAGAAGAAGTCTGACACCATACATATCCTGTGCTTCATGCCCTGCTCGCGATCAGTGGGCCGGGACGGGTCCAAAGATGAAGGGGTTTTAGGTGAATGTGTGTGACCTCTCTTCCTGTGGCCCATGGTGAGGTGAAGTCTTCAGTGCTCTGTTCTTCAAAAGCAGGGATGAACCTCTGGACAAAACAGTCATATTATATAAAGAGTGCAGTATATTGTGGTTGAAAACTTTACTACAGCACGGTAACTGCTGCTAAATATCCATCCACCATTTCAGGCTACGGTGATGTGAcaataaagatttgttttaattgacgaacgaaataaattaattatgaaaGTACATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102268 lncRNA downstream 11058 10085433 ~ 10087022 (-) True G69147
TU102062 lncRNA downstream 152278 9913086 ~ 9945802 (-) True G69018
TU102048 lncRNA downstream 206484 9890651 ~ 9891596 (-) True G69004
TU102035 lncRNA downstream 425179 9672572 ~ 9672901 (-) True G68994
TU102028 lncRNA downstream 443513 9654116 ~ 9654567 (-) True G68988
TU102250 lncRNA upstream 7247 10108975 ~ 10110243 (-) True G69136
TU102285 lncRNA upstream 16065 10117793 ~ 10172985 (-) False G69157
TU102297 lncRNA upstream 34921 10136649 ~ 10138759 (-) True G69168
TU102283 lncRNA upstream 70041 10171769 ~ 10174858 (-) True G69157
TU102286 lncRNA upstream 72208 10173936 ~ 10242212 (-) False G69157
XM_043249100.1 mRNA downstream 1836 10092350 ~ 10096244 (-) False LOC122351801
XM_043249099.1 mRNA downstream 1837 10092350 ~ 10096243 (-) True LOC122351801
XM_043248260.1 mRNA downstream 27195 10060318 ~ 10070885 (-) True gja5a
XM_043248468.1 mRNA downstream 40320 10051625 ~ 10057760 (-) True acp6
XM_043248247.1 mRNA downstream 104608 9990190 ~ 9993472 (-) True LOC122351281
XM_043249103.1 mRNA upstream 38565 10140293 ~ 10149241 (-) False srpx
XM_043249105.1 mRNA upstream 38565 10140293 ~ 10149219 (-) False srpx
XM_043249102.1 mRNA upstream 38565 10140293 ~ 10148852 (-) True srpx
XM_043249104.1 mRNA upstream 38565 10140293 ~ 10148851 (-) False srpx
XM_043249095.1 mRNA upstream 48147 10149875 ~ 10160006 (-) True rpgra
TU102057 other downstream 187902 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 1757065 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 2003233 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 2079975 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 2949460 7070985 ~ 7148620 (-) False LOC122351350
XR_006251819.1 other upstream 331779 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 331779 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 331779 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 413544 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 578430 10680158 ~ 10686627 (-) False mrasa

Expression Profile