RNA id: XM_043249131.1


Basic Information

Item Value
RNA id XM_043249131.1
length 4212
RNA type mRNA
GC content 0.40
exon number 12
gene id lrrfip1a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13179504 ~ 13211066 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGAGTCCATTCTCGCACCAAAAGTGAACCAAAGCGAGAGAAGAAAAGTTTTATCTTAGCCGTTATACCGAAACCCACCCCCCTGTTAAACGACCCAACTTTCTGAGCAAACAAACTCTAGATCATTTACAGCCATTTTGGCAGCTCCTCAGAAGCGACACGTGTGTCATGAAAACGCGTTTGCGCTCTCAGCACCGGTGACTCTTCAGTCTTTCACAGTACGGCACTAGGAAGAGTGCAAAAAAGACGGATGTAACACAATGAACCGAGCAGCGAGCGACACGACGTAGCgttgctgtttttttggttAGAATCAGAAAcgtgctttcttttttttatgccttttcTGAAGGAATAGTTCTCCCAAGGATCGGTTCTCACGCGTAAAGCAGCGCGTGTTTGGTTTGATTTATTAAAGGTTACCAATGGGGTCTCAAGGGCCAGGACGTAAAAGAACCCCCAGCAAAAATGGGTTGACTGCTGAGGAAGATGCCCTCAACGTAATCGCAAAAGAGGCTGAAGCCCGTTTGGCAGCTAAGAGGGCGGCCCGTGCAGAAGCTCGTGAAATCAGAATGAAAGAACTGGAGAGACAACAGAAAGAGATCTATCAGGTGCAAAAGAAATACTATGGATTGGATAACTTGGACAACAAATGGGGGGACATTGAGCAGTGGATGgAGGACAGTGAGCGATATACACGTGTCTCACGAAGACATGCTTCGGTGTCAGACGATGAAGAACGGATGTCAGTGGGGAGCAGGAGCAACATACGGgctGATGACAGGTTAGAGCGAGACTACTTGGAAAAGGGATCTTCGAGAGCATCGACTATTTCTGGCACCACTCTAACCTCTCTGGGTGGGACATCCTCACGGAGAGGTAGTGGAGATACATCTATCTCTGCTGACACAGAAGCATCCTTAAGAGAAATCAAGGATTCTCTTTTGGAAGTGGAGGAAAAGTATCGTAAGGCCATGGTCTCCAATGCACAGCTGGACAATGAGAAGACCAATATGATGTATGAAGTGGACACTTTGAAAGACTCTCTAATGGAACTTGAGGAGATGCTCTTTGAAACACGCCGTGAGCTTGAGGAAAAGTGTAAGGACCTTGAACGAGAGAAGCATGCTCATAGCATCTTGCAGTTTCAGTTCAGTGAACTGAAGGAGACGTTGAAACAGAGTGAAGAACTGCTCACTAAACATGGCATTGTCCTTGGACCCGACTTGGCCACCAATGGAGAAACGGAGGAAGAAGTCGGAAAGGCTGATCAGAATTCTCAAACTGCATCAGCTGAAATCCGTGAGGGTAGTAGTGTACTAGGCACTCATCAGTTGAAGGTGTGTAAAGACCAGCAACAAAAAGATTTGGATGATGCAGTGCCAGGGAATCAGCAGTTTTCAAATGCCCCATTCAGTTCTACAAGCACACCTTTAGAAGCAAATGAGAATGGAGACCTTGGGGACCAAATGAATCAGGGTGTAAAGCTGCATGAGAATAAACCTGCAGTGCATTCTAATTCTGTTGGTAATGATGAACTCACTGCAGCAAGAACCAATGAGGAGATAAAATCTGAGGTACATAAACCAGAAGATTCTAGAGATAATACAGTGGAATTAAAGTGCATAGTTCACAAGGATGGACTTTTGGAGACGGATCAACAAGATAGTGAATGTGTCAAAACTAGTCAGGACATCAAAGAAGACTTTGTCTCTGGTTCTGTTCATGATGAACCTGATAAACCTATTGGAACTGTGCTTGATGATAAACTCAAAGAGGAGCCTGTAGATTCATCTCAAACAGAGAAGCTTGCCAAAACCCAAGGCGCCAGTGcttcaaataaaaagaagaaaaagaagaagaaaaacaaaccgaagcacaaacaaagtgaCAAGCAAGAGAATGACACACAGATTGATGACAAGAATGAAACCGTTTGTAATGAAgacaaaccaaaccaaaaaatgGAAAGTGACCTAGAAGGAAATCATCAGAAGCCCTTAGGGAACGATATATCCAAACCAACGATGAATACAGATGTCATACATGATGTTAAAGGAACCAGTGAATTGGGTGGTTTCGAAAcaagcataaatataaatgcagatGATGTTAAAGATAAAATTCTGTTAGTTACAGATGAAACTGATTTATCAGGAATTTCTAAAACAATCTCAAATTTTGGTTGCCCTGAATCTAGCAATGGTGTCAGTTCAGATGATCTGTCTAGCAATGTTATCTCAAACCCTGCAAACATTATTGATGAACACAATGAGGACTCGACAAATCCTGACTCCGTAAGTGTAGTCTGTGGATGTGAGCTTGTATCTTCAGAAATGGTGACTTCACTGCCTCATGAACCTGCTGCTCAGTCCATAGATGCTGTTGAAGGGGTTGTTGAGTGCATCAGCTCTTCTGAGAACATTGAGAAATCTTCATCAGTAAATGAGAAGGAAAATCTGAACTGTGAATTAGAAGAACAGGAGGAAAAGGTACAGAATGCTGATCAAGATGAGAGCACTAACCTTGAAGATCAAGATGACTCTGCTCATTCCACTTCCCCTGtaatggaggaggaggaaaatgaAGCTGAAAGAGTAATCCTGGAACAACCTATTGATCAGCCAATGGAAAACCAACTTCAAGACACCATTGGTGCAGAATTGGACCAGGAAGTGATTGAGAGACATGATAATCTGGATAAAGAAGACATTAAAGTGCctactgaaaatgtttttgatccTCAAGATGGTATTTTAGCAGAACTGGACCAGGAAGAGGTTGAGAAACAAGATGAACTGGATGAAGAAAACCTTAAAGTGCCTACTGAAAATGTGTCTGATGGTAGCCATGTTGAAAACACCCCTATAATTGAAACACAGGTTAATGAGGATCACTTGTCTCCCAATGAAGCAATTAAGAAATCAGTTGGAGAGTCGGATTCTTCTGACCAGGAACCCAAGGTAGAAAAAGATGAGGAGGAAAGATCAATCCAAAATCAGCTTGAAGTGCAACTGCCTGAAGATAAAGAAGGGTTTCTGGTAAAGTCAGATGTGGCTTCTCAAGAGCTCaaggaggaagatgaggaagaggaagatgaaggAGAATCATTTGATTTTGATGAAATGGATCTTGAAGCATCATCAAATGCCCCTCTAAAAAACTTTCAAGATCAGCCAAAAGAGGAAGGTActctttttaaagatgaagtCAAAGAAGCAAAACCGGAATACCAAAACAATGTCCCCGATGAGGACCAAACTATAGAAGAACATCTAGAACTTGAAGATCAGGAATCAAAGCCAAAGGAGCAAAAAGATGGAGACACAAAAAACCCACAAACAACAACAGTTACAGAAGGATGTTTAACGGAGGACAGCCAAATCAGCAGTGAAGTCGAACCTAATGATCAGCAATGTGATACTTCTGGAACAAAGGAGGCATTTAAGGAGCATCGGCAGTCATCAGATGATGTGAAGCTCAGTGAAGGAGTGCTCTCAGAGATGGAGACTATAAATGTAGGCcaagaaattaatacttctaTTCAAAATGAAAAGGTGTCAAGTATTTCAGGAGAACAGGAGGTTGAAAAGGAAACCACAGAAAGAAACAaggaagatgaaagaaaagaatctAAAAAAAGTGGGAAAGGGAAAGGGAAGGGCAAGGGGAAAGAAGAATGTAAAATGGCTTAATAGACAAGGACAGTCTCTTCTCAGCACCTTCAATTGAAAAAGTAATTTGCACTTATGTAGGTCCTAATGGAATTATTTTGGGACCATTATTTCAGAGAACCCTAAAATAACCAAAGTTATCATAAGGTCATTTCTAGTTATCACTTGCATATTGTTCAgcaaacatattttacacatgAATGTTTTACACCTGATTAACAAAACAGAATGTtcaaacagtatttaaaatcataaaaccaATTACACATTAAATGCTGTCAATAATGGGTATAAAGTGTCATATTTATTATGGAATTTTAcatgtgcattaataaaataatcttgtACTATGAGTAATACAAATGATTACCTTTCTGTTTTGCAGTCAAGTTTAGAAACCTCTTAATTACAGTGTTTTCAGTAACAAAGGACctgtaatgtattttgtttaaattggttatattgttaaaaacaatttttggtaaatagaaaaatgttattgtgtGCCAACCTTATTAAACATTCCATAAGGATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103184 lncRNA downstream 145702 13035956 ~ 13037453 (-) True G69762
XR_006251806.1 lncRNA downstream 394021 12787115 ~ 12789134 (-) True LOC122351847
TU103153 lncRNA downstream 409303 12773441 ~ 12773852 (-) True G69738
TU103148 lncRNA downstream 451412 12731041 ~ 12731743 (-) True G69733
TU103090 lncRNA downstream 536153 12645836 ~ 12647002 (-) True G69704
XR_006251825.1 lncRNA upstream 17096 13228154 ~ 13232210 (-) True LOC122351987
TU103357 lncRNA upstream 19809 13230867 ~ 13232202 (-) False LOC122351987
TU103390 lncRNA upstream 91345 13302403 ~ 13327413 (-) True G69888
TU103400 lncRNA upstream 99815 13310873 ~ 13325669 (-) True G69896
TU103479 lncRNA upstream 200754 13411812 ~ 13412439 (-) True G69953
XM_043249139.1 mRNA downstream 6621 13173919 ~ 13176534 (-) True maip1
XM_043249136.1 mRNA downstream 9371 13160284 ~ 13173784 (-) True pgap1
XM_043249646.1 mRNA downstream 24853 13139656 ~ 13158302 (-) True hecw2a
XM_043248954.1 mRNA downstream 45183 13130049 ~ 13137972 (-) True stk17b
XM_043248428.1 mRNA downstream 65432 13114503 ~ 13117723 (-) False ftcdnl1
XM_043249436.1 mRNA upstream 24349 13235407 ~ 13236184 (-) True prlh
XM_043249431.1 mRNA upstream 25623 13236681 ~ 13251659 (-) True mlphb
XM_043248869.1 mRNA upstream 143693 13354751 ~ 13362915 (-) True cops8
XM_043248870.1 mRNA upstream 147768 13358826 ~ 13362914 (-) False cops8
XM_043249085.1 mRNA upstream 189194 13400252 ~ 13410399 (-) True ints6
TU103179 other downstream 197177 12985124 ~ 12985978 (-) True G69757
XR_006251867.1 other downstream 444984 12738044 ~ 12738171 (-) True LOC122352189
TU103144 other downstream 471331 12708631 ~ 12711824 (-) False LOC122351186
TU102995 other downstream 759709 12422429 ~ 12423446 (-) True G69650
XR_006251743.1 other downstream 993499 12166991 ~ 12189656 (-) True gtdc1
TU103524 other upstream 262082 13473140 ~ 13495645 (-) False gypc
TU103526 other upstream 262082 13473140 ~ 13495645 (-) False gypc
TU103924 other upstream 596764 13807822 ~ 13813327 (-) True G70261
TU103993 other upstream 727201 13938259 ~ 13939868 (-) True G70294
TU104031 other upstream 985421 14196479 ~ 14253776 (-) True G70317

Expression Profile