RNA id: XM_043249138.1


Basic Information

Item Value
RNA id XM_043249138.1
length 1569
RNA type mRNA
GC content 0.45
exon number 8
gene id tyw5
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13176613 ~ 13179387 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctatgtgtgttgtttgtgttaGTTAAAAACTACTTTTAGTAGCGTTGCCCGAACGAGTCGGTTCACATTGAGTCGGTTGAACCTTTGTTGTTCAAATAGATGAATCAATTGATTGAATTGGTCAGAGTTCTCGGGCTAGCAACTCACCTATTCGCTTCATCTATGAATTAAACGCAATTCTTAAAACGTAATAAACAACATTACACGCACGCGTAGGGTTTGTCGGTGATTTAGTTAAAAGCGTAGACCTTTTAACTCGGTTCTTTGGAACCAACTGTTTAAAAGAGTCGACTCGCAAAAACGAGTCGGACTGTCTTATCGCCACTTTCTGAGGAAGGCGGAGTGGTGCAGATGGCCGCGAATGGAGAGTAGAGTTCAGACTGTCAGAAATGGATTGTCAGGAAAAGCTGGAGGTTCCCGTCTACACAGATGTGGACAGAGAGACTTTCCTGAGGGACATATATCCATTGCGTAGACCAGCGGTTCTGAAGCGCGTGCCCCTGGGGCCATGTGTGCGTGCATGGACGGCGAGCTATGTCGCGCAGAAGGGGGCAGACCGCGAGGTCAAAGTTCATGTGTCCCCAGAGCCCAGAATGGACTTTCTGCACAAGAACTTTGTGTACAGGACACTACAGTTTGACAAGTTTGTTCAGAGAGCCGCAGAGGCAAAACACACAGATTTCTTCATTAGTGAGGATGAAAGCTATTACCTGCGCTCACTTGGAGAAGATTTTCGCAAGGAACCGGCTGATTTAAGCAAGCAGTTCCCTGAGCTGGCAGAGGATTTTCACGTACCCCAGTTCTTTGAACCCGAGCagtttttctccagtgttttTCGTATCAGTTCCTCTGGTCTGCAGCTGTGGACACATTATGATGTAATGGACAACCTTCTAGCTCAGGTTACAGGAAGAAAGCGTGTTGTTTTTTACAGCCCCGAAGATGCACTCCATCTTTACCTCACAGGGGACAAGTCTGAAGTTTTGGACATTGACAATCCCGATCTGCAGATTTATCCTGAGTTTGTGAAAGCGCGTCGTTACGAGTGTATTCTGGAGCCAGGAGACATTGTCTTCATTCCAGCTCTTTGGTTTCACAATACCCTGGCTCTCCAGTTTGGAGTTGGTGTCAATGTTTTCTGGAGGCATCTTCCACCTGAGAGTTATGATAAGAAAGATCCATATGGAAATAAAGACCCGGTAGCAGCCACTCGAGCGCTCCAGTCACTGGAGAGGACTCTGGGCATCTTGGATGAACTGCCACCTGATTATCAGGATTTCTATGCTCGTCGCATGGTGCTGCGGATTCAAAAGCGGATGTACTTATAACGGGGTTTCAATGTGTTTTATTCTGTAGTTTAGTACCGTTTCCTGGTTTATCATGTGACTACCTTGATCCTCgtgttttcctgttttctgATTGGATGGTATGTAAATGTTGCCTTTATATTTCACTAGTTATTTAAGTTTAAAGTGTGTTAAACATCCATTTCCCATATCAACCTGTTAGTCCTGGTCgctttgtttatatgtatactGAAGTTTCAAATAAaggatgtattttatttta

Function

GO:

id name namespace
GO:0031591 wybutosine biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0000049 tRNA binding molecular_function
GO:0005506 iron ion binding molecular_function
GO:0042803 protein homodimerization activity molecular_function

KEGG:

id description
K18066 TYW5; tRNA wybutosine-synthesizing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103228 lncRNA upstream 42774 13130098 ~ 13133839 (+) True G69796
TU103215 lncRNA upstream 68781 13107595 ~ 13107832 (+) True G69789
TU103208 lncRNA upstream 69856 13106280 ~ 13106757 (+) True G69783
TU103136 lncRNA upstream 336462 12837719 ~ 12840151 (+) True G69723
TU103127 lncRNA upstream 373205 12773958 ~ 12803408 (+) False LOC122351618
TU103514 lncRNA downstream 336302 13515689 ~ 13518237 (+) True G69985
TU103566 lncRNA downstream 489719 13669106 ~ 13669444 (+) True G70021
TU103585 lncRNA downstream 506409 13685796 ~ 13686466 (+) True G70029
XR_006251759.1 lncRNA downstream 507278 13686665 ~ 13687505 (+) False LOC122351436
TU103586 lncRNA downstream 507387 13686774 ~ 13689033 (+) True LOC122351436
XM_043248429.1 mRNA upstream 55570 13118279 ~ 13121043 (+) True c9h2orf69
XM_043248432.1 mRNA upstream 63664 13109217 ~ 13112949 (+) False nabp1a
XM_043248430.1 mRNA upstream 63664 13109218 ~ 13112949 (+) True nabp1a
XM_043249598.1 mRNA upstream 70402 13094152 ~ 13106211 (+) True cavin2a
XM_043249689.1 mRNA upstream 86271 13035893 ~ 13090342 (+) True tmeff2a
XM_043248268.1 mRNA downstream 32358 13211745 ~ 13213541 (+) True LOC122351306
XM_043249434.1 mRNA downstream 40236 13219623 ~ 13225136 (+) True ackr3a
XM_043249435.1 mRNA downstream 52919 13232306 ~ 13235269 (+) True rpe
XM_043248955.1 mRNA downstream 80874 13260261 ~ 13348573 (+) True LOC122351698
XM_043248960.1 mRNA downstream 80874 13260261 ~ 13348573 (+) False LOC122351698
unassigned_transcript_1466 other upstream 68117 13108415 ~ 13108496 (+) True trnas-cga_5
TU103176 other upstream 190635 12984868 ~ 12985978 (+) True G69755
TU103175 other upstream 190635 12985171 ~ 12985978 (+) False G69755
TU103123 other upstream 403504 12772088 ~ 12773109 (+) False LOC122351618
TU103281 other downstream 110306 13289693 ~ 13304591 (+) True G69834
unassigned_transcript_1467 other downstream 244327 13423714 ~ 13423826 (+) True trnal-caa
XR_006251758.1 other downstream 496776 13676163 ~ 13681991 (+) False ccnt2a
XR_006251807.1 other downstream 2221741 15401128 ~ 15425039 (+) False si:ch211-168k14.2
TU104429 other downstream 2528849 15708236 ~ 15711177 (+) False LOC122351678

Expression Profile