RNA id: XM_043249141.1


Basic Information

Item Value
RNA id XM_043249141.1
length 4979
RNA type mRNA
GC content 0.47
exon number 37
gene id rnf17
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10487697 ~ 10504466 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGCTCATCAGTTAATGAGGTGTCACGGTAAGGTTAGCTCGTGTGGAAAATGTCGGACACAGCGGTTGCTTGTAACATCTGTGGCTCATCTTACACATTACCTGAAGATGAATCTGGGGGGAATCTCCCTCATGTGCTGGTGTGCGGTCACATTTTCTGCAGCACGTGCTTGCGCGCGCTCCAGTCCCAGCAAAACCTCATCACGTGTCCAGAATGTCAGaTGGACACTAGTATTGAAGAAGGAGTTGATGGTTTGGAGGTGGACAGCAGAATCATTGGCCTCATCTATACAGCGAGGATGAACACAAAGAAAGGCAGACACCGGTGTAAATCTCAGAGATTTAAGAGTCCACCGCCAGCAGGAGCCATCCACACACAGGAGAATGCTGAAGGGaGGCCAGATGTCGTTAAAGTTTTGGACGAATTCCTTGGGAAAGCAACAGAAAACTTAAGTCAACTTGATAAACTTCACAAGTCTTTTTCCAGTGGTATTCATGCTCAACTGAGGAAAGAGAGAACTCGAATAATCAGAGAAATTGATGAGGCTGTTGACAAAGCAAAGAGGGTCCTGCAGAAAAGGAGGAGTATGTTGGTGTCAAAACTGAGTGATGTCGATCTTCTCTTCACGGATGGTCGGAAAGAATGTAACAGAATGGAAGAGAGGATGAAGGAGCTGCAAACAGCCATCCAGAAAGCTCGGCATGTCCGACAGGTTCCTTCTCTGGAGACATATTGCAATCTAGACAAGattttggaGACACTACACATTCCAGTGGATGCTGAATCATATGACATGAGCTCTGTGTCATTGCGTTCGGGACTCTGcTGCAGTCTTCAAATGGACAGTTTTGTTGACAGTTTGAGAAGCTGTCTTAAAATTACAGATGACGATGATGACTGttttttaaaagaagttacAGTGGAGCCTTTTAAACACGTTGTGAAGAGTGGTATGGAGGTCTGGGACAGCTCCAGTCAGTCTGTTGGAGGAAATGCAGATCCCATTGTcaaaaagaaaagcacaagCAGGCCAAGTTTCATAGAGGAAATAATGGAAGACATTGACACTTCTTCAGAGGTAGTGGAAATAGCCCATAGTTTCCCAGAACCTGAACCAAGGCATGCTGAAAGGCACACAATGCATAGAAGACATCGCAGGCAGCGTTTTGACAGGCCCTTAACTACACAGCCTAAACtggtGCACTATGTTATGGCAACTCACATCGTAAACCCTGCACATTTCTATGTACGCTATATGATGGAACAGAAGTCAGGCCAAAAGTTGACCAAAAAGGTCAATGAATTTTGCTCGGGAGATAGTAGCCTCTTCACGTTCAGTGATGAAATCAAGACAGGCTCTGTGCTCTTTATCTATTGGAAGAAGGATGTGTGGTGTAGGGTAACAGTGACTGAGCTCTTTCAGAAAGAGTGTTTCCAGCATGTGCCCAAATGCCTTGCATCAGAAGTCTCCCGTCTCTGTGTCTACTTCCAGGACTTTGGCTTCTCCAAGGGCATTTCAATTCCAAGTGATGGAGGTTTAAGTGTGTTGAATGAGTGTCTGCGGAGACCTGATGCTGCTACTCTGGCTGAAATGAATGGCTGGGCTCCTCTGGCCATCAAATGCTCCCTTAAAGATATTGTTCCTGCAGACCTGCTCAAAGGGTGGAGTTTAGAGGCAGCTGACGAGATGAGGAGCCTGCTGGGATCCGAGGCTGTGGAGATGCAGGTGTTTGGTGAGGAGGGAGACACTCTGTTAGTGGATCTGAAAAAAACACCAATGGTGTCTATGCGGGAGCACCTGGTGTTCATGGAGCTGGCCAGATTCTACTCTCCTATAGTTTCCCCTGGCAGTGTACCACTCCTCTTCTACCCATCAGTTCGCCCTGCACTCAATGTTGAGGTCAATGCTATGGTTTCTCATGCGAACAAACCATCAGACTTCTATGTACAACTAGTTGAAAATATGGAGTACCTGCTGTTGCACTCGAAGCTCCAGGACTGTTACAGTCGCCCCCAGGCAAACAGTGAGTTTCAGATCTTCTGCCCTTCTCTCTCACAGGCCTGCGTCGCTTGCTATGACCAGGAATGGTGCAGGGTTCAAGTCATAGGCTTCCCTGGTGGTCGGATGGTTGAGGTTCGGTATGTGGACTTTGGCTACAAAAAGACTCTCTCTGTGAAGGATCTGAGACAGATAAAGGATGAGTTCTTTGCTTTGCCAGAAATGGCCTTGTGGTGCAGTCTGAATGATGTGGTCAGTCCGCAGCATACATGGAGTGATGAAGCCTGTGTTGCGTTCAAGGAACTTGTGGAGCATAAACTAATCACTGTTGTGGCAAAAAAGCTTGTTGCCGGCACTGGACCTGTGCCTGTGTGTCTGTATGAGATTGGTGATGATTGCACTGGAGCCAGTATTGGAGATTTACTGGTCAGAAATGGTCTTGCTGTTTCCAGTAAACAGTGCCAGATTAAAGACACCCAACCCTTGGAGACAACCGTATGGGACCCTCCATTTGAAGAGGAACCTCTGTCTGTTGCTCTGACTCCTCCTGTTTCTGAAGAGCTGAATGCCAGCCTGATTCTGCCCACATGTGTCAAAGACATCAAAGTTCGTGTGACACATGTCACCTCTCCTGGAAACATTTATGTGCAGCTGCTGCAGTTTGACAGCCAGCTGAAGAGAATCCATGACACACTGAAGAGTCTCTTCTCTAAATCAGAGCCACAGGACATGCTCTGGGAAGCGGAGATGTTCTGTGCTGCTAACAACACTGGGGTTTGGGAAAGAGGAAAAGTGTGCACCGTGTCTGCTAATGGGGTTGCTGAGgtTTTGCGTTGTGACTTTGGTAATAAAGTGAATCTCCATGAAAACAACCTCAGACCCCTCAGTCCTGATCTGATTGGATCTTTCTTACTGGAATGTAACCTCAGTGGTGTCAGGCCAGCTGGTGGTCGCTCCACATGGACAGCCACGGCCTGTGACTTCATCTCTCACTACTTGACCGGTGCCATGGCTGTAATGGCCATAAAGGACCCATCTGCCAGGCCAGTGCTGGTGTCTCTGTTTTGTTCAAACCGTGCTGGTCAAAACGTCAGTTTCTCAGATTTCCTCATCAGTGAAGGACTTGCTCTAAAGGAGAGGAAGGCTGCTTCCACATCAGAGACGGTCTTCTCAGAGCAGTGTGTGAAGATCGAGAAGATTCCTGAGCCGCAGAGACTCACAAGCCTTCCTCAGACACCACCCACATCCACCCCTCACATCAGCCCACCACCAGAGAAAGTGCAGACACACTCGTACCCCCCTCCAGAGCTGCCTCCCTGTGGACACACACTCATGAGCATCTCAGCTGTCTCCGAACAAGGTGTCATTTATGCAATGACGCACCAAGCAGTGTGTGAGTTTGATCGTTTACGGGAGCGCCTGCAACAACACATTAAAACCTTGCCAAGACAGAAGAACTACAACTGGAAAGGAGTTTTGGGATGCGCTGTCATGGGAACAGACATGTTCTGGTACAGAGGTCAGGTGCAAGAGGTCATTGGAGGACACGTGAAGGTCCAATATGTGGATCAGGGGCTTGTGGAGAGTATCCCGGTTTGTCATGTGTATCCAATGGTCCTCTGTGAGGATGTGCCGCAGCTCTGTGTGCCATGCGAGATAAATGGAGTCATACCGATTGGGAAGGGATGGCAGTGGGACGCTGTGGTGCTCATGAAGGAGTTGCTACTTGGGCGTTCAGTCAGTGTACACATTATTGAGCACCCAGAGGATCCTTGTGGCTGTGTAAAGGTTGAGATAACAGTGGATGGAATGGCGCTTAGTAAGATAATGGTGCATCACCAATATGCCACTTTCGATCCTGCCATCAGCAGCCGGGAGGATTATGTGGTTCCGCCTCCTGTCCCTGATTTGGATGACTGGGACCTGAACACAGAGGGGTTGCAGGAGCCCCAGACTGTTTTAGGGATTTATAAAGAACTCCAGATTCCTAAATCAAGAAAGCATTTCCCTGCGAGGGTCAAGCATATCCGCACCCCAAATGAGGTGTTCCTGTGTTTGTTGGATAAGATTCTGGGTGAAGAGGAGCAAGAGGAGAACTTGGAGGAAGCTCTTGAGCGTGTGAATGAGAGGATCGAAAATCTGAGCCCGCTGACAGACTTTCCCATCGagtGTTCCTGTCTGGCTGAGTACAGCGATGGAAAATATTATCGTGCAAAGATACTGGGTTTTTCTCAACTCACTCCTTCTGTGAAGCTCCTCGTGAGACATGTGGATTTTGGTTCGGATGACATCTTGCCAACTCAAAAATTGCGTCAACTCCCTACATCCCTTCATCACTTCCCATGTGCAGCAGTTTATGTCAAGTTAGCAGGCTTCAAACCAACAAGCGCGTGTTCGGAGTTGGAGAGGATACCTTACCGGCCTGAGTGGAGTATGAGAGCCATGATGGAGATGATCGACCTGTTAAACGGGGAGCTCACTGCAGTGGTCACTGCTACTGAACCACAGCTGAGTGTGCTGTTATACAATGCTGAAGGGACACTGGTCCACAGACCTCTGGTGGAGAAAGGCCTCGCCGATTATGCGTAAATCTAGTGAAAGTTGGGTCAGTGATGCTGTAAAACGTCCGATTTCATAGAAGCTTCTTcgaaagcaaaacattttatgttattagttttaaaacTCAGGGTTTTATGCTACATTTGtgttaaaacaatttatttaaaaacattttatgttgaaaCATTTAGCCAGTTTTGTTCGTGcagcttaaatatttttgttcctGATCAAAGCTGCTTCAGAGTAGCAggaatattttgttaatatttaatctcTCTCTATGTTAACCAGAGCGGAAATAAAACCTGTCAACTCTGATTTTCTCCAAAGATATAATTGAATTTAGACATTTTGGGTGTTATCAATCGCAGCCCGATCAAGATCAATTCAGACCACTACTGGAAGTATCCTGCAGAA

Function

GO: NA

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102406 lncRNA downstream 40930 10445277 ~ 10446767 (-) True G69231
TU102394 lncRNA downstream 43056 10444293 ~ 10444641 (-) True G69228
TU102379 lncRNA downstream 61232 10426227 ~ 10426465 (-) True G69223
XR_006251782.1 lncRNA downstream 224250 10253933 ~ 10263447 (-) True LOC122351639
TU102286 lncRNA downstream 245485 10173936 ~ 10242212 (-) False G69157
TU102549 lncRNA upstream 333046 10837512 ~ 10844040 (-) True G69346
XR_006251830.1 lncRNA upstream 345357 10849823 ~ 10908594 (-) False LOC122352018
TU102556 lncRNA upstream 345357 10849823 ~ 10891473 (-) False LOC122352018
XR_006251829.1 lncRNA upstream 379189 10883655 ~ 10908594 (-) True LOC122352018
XR_006251756.1 lncRNA upstream 426014 10930480 ~ 10946744 (-) False LOC122351427
XM_043249742.1 mRNA downstream 8612 10462995 ~ 10479085 (-) False mcf2lb
XM_043249744.1 mRNA downstream 10953 10462995 ~ 10476744 (-) False mcf2lb
XM_043249741.1 mRNA downstream 10953 10462995 ~ 10476744 (-) False mcf2lb
XM_043249743.1 mRNA downstream 10955 10462995 ~ 10476742 (-) False mcf2lb
XM_043249740.1 mRNA downstream 10957 10462995 ~ 10476740 (-) True mcf2lb
XM_043249146.1 mRNA upstream 10806 10515272 ~ 10519457 (-) True fdx1
XM_043248809.1 mRNA upstream 27187 10531653 ~ 10558579 (-) True uggt2
XM_043248811.1 mRNA upstream 27187 10531653 ~ 10556760 (-) False uggt2
XM_043248812.1 mRNA upstream 27187 10531653 ~ 10556760 (-) False uggt2
XM_043248807.1 mRNA upstream 27187 10531653 ~ 10556760 (-) False uggt2
XR_006251819.1 other downstream 45825 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other downstream 45825 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other downstream 45825 10433507 ~ 10441872 (-) True trim13
TU102057 other downstream 577519 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 2146682 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251803.1 other upstream 10806 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 175692 10680158 ~ 10686627 (-) False mrasa
TU102802 other upstream 992544 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 1662525 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1917963 12422429 ~ 12423446 (-) True G69650

Expression Profile