RNA id: XM_043249157.1


Basic Information

Item Value
RNA id XM_043249157.1
length 3106
RNA type mRNA
GC content 0.45
exon number 10
gene id abi2a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8026229 ~ 8055168 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGGAGGCGAAGCCGCTGTACTTCCTGTCGCCGGTTGCGCGAGGCGGGCGCGTGGAGGGATGTAAAGATGGCGGAGCTGCAGATGCTGCTGGAAGAGGAAATCCCAGCGGGTCGCAGAGCGTTACTGGACAGCTTCACCAACCTCGAAAGAGTCGCCGAATACTGCGAAAGTAACTACGTGCAGTCTCCAGACAAGCACGCCGCTTTAGAGGAAACCAAGAACTACACCACTCAGTCCCTGGCCAGCGTGGCCTACCTGATCAACACACTAGCCAACAATGTGCTCCAAATGCTCGACATCCAGGCGTCTCAGCTGCGCCGAATGGAGTCCTCCATCAACCACATCTCTCAGACGGTGGATATTCACAAAGAAAAAGTGGCGAGGCGGGAGATCGGCATCCTCACGACCAATAAGAACACCTCCCGCACGCATAAAATCATCGCTCCAGCCAATCCAGAGAGACCGGTGCGGTACATTCGCAAACCTATCGATTACAGCGCGCTGGATGATATCGGTCACGGTGTGAAGTGGTTGCTTAGGTTCAAGGTTAACACCCAGAACATGAAGATGGGTGGCCTTCTTCGCACCACACCTCCCACACAGAAACCGCCAAGCCCCCCAATGCCTGGAAAAGGCACCATAGGGAGACACTCCCCCTACAGGACGCTTGAGCCAGTGCGGCCTCCGGTGGTGCCAAATGACTACGTCCCCAGCCCCACACGCAATATGCTGCCCATTCTGCAGCAAAGTCCTGTGCGCACGGCTTCTGTTAATCAAAGGAACCGCACTTACAGCAGCGGGAGCAGTGGCGGCAGTCATCCCAGCAGTCGCAGCAGCAGTCGTGAAAACAGCGGCAGTGGCAGTGTGGGTGTTCCCATCGCTGTGCCCACACCCTCTCCACCCAGCGCCTTCCCAGGTGGTCCTCAGTTCTACAGTATGAACAGGCCCGTCCCCAGGCAGATCTCCCCCACAGTGGGGGGTTCGCTGCCTTATCGCCGAGCACCCTCGATCTCGGGTCAGACTTCCATGCCCCCCAGCCAACAGAACGGAGGACCCCATTACAATCAGAACCAAGTTTCAGATGCGCCTCCTCCACCTCCCCCTTCAGAAGAGCCGGTGTTTGAGGAGACACAAAACCCAGTTCCACCCCCAGAAGACTACGAGGAAGAGGAGTCTTCTGTGGTGGAGTACAGTGACCCCTATGCTGAAGAAGACCCACCCTGGGCTCCACAAACTTACGTGGAGAAAGTGGTGGCAATCTACGACTACACGCAGGACAAGGAAGATGAATTGTCTTTCCAGGAGGGAGCCATCATATACGTCATTAAAAAGAATGACGATGGCTGGTTCGAAGGTGTGATGAGCGGCACTACAGGACTCTTCCCTGGAAATTACGTGGAGTCCATCATGCACTACACGGAGTGAGAGCGTCCTCCGTCTCTCCCCCAACCCTCAACGCCCACCAGCGCTAATCTTACACTGCAGAAGAGTGCATGTGTGCATACAAACCATGCTAATAACAGGCCGTGAGACTTCAGAGATGAGAGGTGCAACTGAAGAGAGGAAGCGACTTGGAGCCGGAAGACAGAGAAAAACACTATTagagaaataaaactatattaataaaCGCCAATAATATGTTTACTGTTGAATGAAGGATACAGAGTTTTGAAGTTCGGGATAAGCTAGATTTAGTGcgagtacatttttatttttggatatttcATAACCTTTGCTCGTTCCACAGCATTGTGGTGTTTTGGAAGGCAGCGCGGGGGCTGACTGACGTCtgaaatggatttgtttttgttttttgaacgGTCTGAGGTGGATTCGGGGTGCGCTTTACAGTGAGCTCACGCTCAAAAAGGGAGTTCATTACATTTATGTTGGAGCAAGGAAAGTGTGGAACTGAACAGAAAAAGCCAATATAGAGAAGAAGCTTTCTATTTATTACATGATGTGACAGCTCAaggtttttaaatttgtttgtaaAGTGTTTTAAGTAATTGTTTGAATTATCCTCTCCCATCTAATTAAAATCAGTTTGAGCCAGATGATATAGGAAATATTTGCACAAAGGTCTCACCCTGGTTTTACTATattgattaaatgtatttaatgtttgtttttccccccTGAGAATCGGTCAGCCCCAACACAAATGCAGTAGACATATCTAATAACCTCATGAactgttttactttttgtttgttttacatttaaatattgtgtCATGATGCTAACCGTTTGGTTAATATTTGATACGTGTATGTAGTGCTTAATAGACTGcatgcttaataaaaaataaaccttatttacatttaatttcttttttttcctttcacattttatttatagagtTCCCACAGTTATGGAAAACTTAAAATATCTGGAAATGTTAAACTAGTGATTTTTAGTcttctcaacatttttttttttagtggtcTGAATTATTTCATCAGCTAAAACTGCAACTGCATGAAACATATTTTTGGTTGTGGGACATTTTGAgacatttacataataatacagtttatcTATTCATTCATGTTAGCACCTGACATTGAAAAATCCTCCAATAGTAGTGATCATCTAGAAAGGTTACCAAATGTTGTGGTACGCGGACAGTTAAAGTCCAAACGTTACAGTATTAATTTGGGTGCTCTTTGTCtttatgctaaatatattgTGCCATTTTGGAGTATTACTGAAATGTGTATAAGCTACTATTTGACAATCACAggtctctttctctccagctACTAGAGCAGTTTTCCATTTTGCAGGTCTTAAAATAAGCAAGTCTTCGTTGCGTCTCCATAgtgaaatttaatttgaatcttATGTAAAGAACAGATGGAGGTTGTTTAAAGCAGGGTAGAGTCAGGTGagctcatctctctctctctctctctctctacttaacaataaaatgtgatgtttaaagggttaatttACCTCTGTTTGAAAGCACATCACTCTAAACACCAGTGTTGACATTTTAACaaagagtaattttttgtaAACCCGTTAACTCTATATTCTTGTGTgcaaatatatgtgtatatatatataactgaataaaagtcCTGGACATAAGTA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101355 lncRNA downstream 204340 7820008 ~ 7821889 (-) True G68554
TU101356 lncRNA downstream 207397 7815249 ~ 7818832 (-) True G68555
TU101275 lncRNA downstream 644721 7381290 ~ 7381508 (-) True G68489
TU101258 lncRNA downstream 684735 7327829 ~ 7341494 (-) True G68473
TU101111 lncRNA downstream 872275 7146440 ~ 7153954 (-) False LOC122351350
XR_006251831.1 lncRNA upstream 415695 8470863 ~ 8474578 (-) True LOC122352023
TU101773 lncRNA upstream 706603 8761771 ~ 8835225 (-) True G68822
TU101778 lncRNA upstream 738693 8793861 ~ 8801749 (-) True G68826
TU101782 lncRNA upstream 747217 8802385 ~ 8805405 (-) True G68830
TU101792 lncRNA upstream 761352 8816520 ~ 8817618 (-) True G68839
XM_043248835.1 mRNA downstream 1557 8016761 ~ 8024672 (-) True LOC122351623
XM_043249603.1 mRNA downstream 68891 7955089 ~ 7957338 (-) True LOC122352095
XM_043249602.1 mRNA downstream 73947 7948380 ~ 7952282 (-) False si:ch211-67e16.3
XM_043249600.1 mRNA downstream 74228 7948380 ~ 7952001 (-) True si:ch211-67e16.3
XM_043248745.1 mRNA downstream 78424 7941133 ~ 7947805 (-) False si:ch211-67e16.4
XM_043249446.1 mRNA upstream 1375 8056543 ~ 8063095 (-) True tmem237a
XM_043249447.1 mRNA upstream 1375 8056543 ~ 8063018 (-) False tmem237a
XM_043249500.1 mRNA upstream 9485 8064653 ~ 8074446 (-) True mpp4a
XM_043249161.1 mRNA upstream 21300 8076468 ~ 8094847 (-) False als2a
XM_043249162.1 mRNA upstream 21300 8076468 ~ 8094764 (-) True als2a
TU101496 other downstream 8124 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 877609 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 1765160 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1926346 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1982304 6043275 ~ 6043925 (-) True G68124
XR_006251804.1 other upstream 23968 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 285775 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 1853020 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 2378339 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 2378339 10433507 ~ 10441872 (-) False trim13

Expression Profile