RNA id: XM_043249163.1


Basic Information

Item Value
RNA id XM_043249163.1
length 4102
RNA type mRNA
GC content 0.43
exon number 4
gene id chpfa
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8966861 ~ 8976999 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCCACTGACACGTACGAATGCCTCAATAATTTGTAGGAAGGTGATACAGTTACAGGAAAGGAATACGTCCAATGCATTTCCGTTAGCAATCGAAACGCTTTCTTAATGTGCGCTACTCTGTTCAGAAGCTCGCGTTTAAAGGAGGTGTGTACGGCACCAGTAGTCGGAGTACAATGAGGTTTTCTATGTTGATCGGTCTGTTGAGGCCGATCGGCCCGGTTATTATCGGGATCTCTCTGGGATTTACTCTGAGTTTGCTGAGTGTGAGTTGGGTAGAGGAGAGCTGTGATATCAATACCATAGCAGATGAAGGAATCGTTTTATCTCAGGACGGAAGTCTGAAAGGAGCTCGGAGACCCAACTCTATTTCCACTGGGAGTGAtggtgaggaggaggaggaggatttCCAGCCGAGAATAATCCCATATAAACCAGTCAAACAATCTCAGCCCAAGAAACTTTTCAGGGCGAAATACATCAGCACAGAGCTGGGGATCCGAGAGCGTCTTTTTGTGGGAATACTGACCTCCAAAAACACCATCAACACTCTAGGTGTGGCTGTCAACCGCACCATCAGCCATCATCTGGACAATGTTGTGTTTTTCACTGGTACGCGAAACCGCAAGATCCCCCACGGGATGGTCGTGGTCACCCACGGTGATGAACGCCTCATCTGGAACATGTTCCAGACCATCAAGTACATTCTAGAACACTACATCACAGAGTACGACTGGTTCTACCTCGCCCAGGACGACACGTACACTCAGGCGGATCGTATCAAGACTCTGGTGGAGCACTTAAGTATGAGCCGGGTGCTGTATATGGGCAGCCCAGAAGAGTTCATCGGAGGTGAGATGCAGGGGCGCTATTGCTATGGGGGTTTCGGATACCTGCTGTCCCGCAGTCTTCTGCTGAGGCTCCAGCCCTTCCTGGAGAATTGCAGGAACGACATCCTCAGCGCCAGACATGACGAGTGGCTCGGGCGATGCATCATTGACTACGCTGATACCCACTGCGTAGAAGAATTTGAGgggcagaagtattattattatgaaatggGAAAAAATTCTGACCCCAGTAAGGAAGATAATGGGCAGTTTAAGAATGCATTGACCGTCCACCCAGTGTCTGATCCTGAGCAGATGTACAGACTTCACAAACACTTCACTGAGATTGAGCTGCAGAAGACTTATGAGGAAATCGAAAAACTGCAGgcagaaataaaaaatgtgagtGCGGTGGCTTTTGAGGGCAACCGTAGTGCTTTGTGGCCTGTTGGAATCAGTCCACCCTTTGAGCCAAAGACTCGTTTCGAGGTCCTCCGGTGGGATTACTTCACCGAGGATCAGGTATACTCGTGCATTGATGGCTCTCCGAAATGCGAGCTCCGTGGAATCGATAAACTGGATGTAGCTGACGTCATTGAGACGGCTATGGGTGAGCTGAACAAGAAGTACAAACCCGTTCTTCACCTGAAGAAGCAGCAGCTTATTAACGGATACAGGCGCTTCGACCCGACCAGAGGGATGGAGTACACCCTGGACCTCCAGCTGGAGGTGGTTAACCAGAAAGGACACAGTCGCTCCATCACCAAGAGGGTCCACCTGGTCAGGCCTCTCAGTCGTATCGAGATCATCCCCATGCCTTATGTTACAGAAGCCACTCGAGTCCATATCATCCTCCCCGTCACTCTTCAAGAACGAGAGCATGTTCAGCAGTTTTTAGAAGTGTACGCCACAAACGCATTTGAAACTAGTGAGAATGCCATCTTGACCTTTCTTTTTATCTACGATACAATCGAGGCCCAACAGGTTAACCAGAATGACATCTTTGCCAACGTCAAAGCGCAGATCGGTGCTTATGAGCACCGGTACCCCACGGTCAAAATCCCCTGGATCAGCGTTAAAAGTGAAAGCCCCTCTCAAATCAAATTCATGGACATCATCTCCAAGAAGCACCCGGTTGACACGTTGTTCTTTATCGCAACTGTGAAAACCAGCATCAACTCAGAGTTCCTTAATCGCTGTCGGATGAACTCCATCAACAGCTGGCAGGTCTTTTTTCCCGTCCATTTCCAATACTACAATCCCGACATTGCTTATCACAACCAGCCTCTTCCCAATACGATGGATTTGGTCAAAGAGTCCGGCCTCTTTGATCGCAGTTCCTTCACAGAAGCGTGTTTCTACAACTCGGACTACATGGCGACTCGGACACGCATGTCTTCGGATGTCCAGGAGAACGAGGAGATCCTGGAAAACCTGGATATATATGACATGTTTGTCAAATACTCTGGCCTCCATGTTTTCCGAGCAGTGGAGCCGGCCCTTCATCAGAAATATAGCTACCAGCCGTGTAATCCTCGACTTAGTGAAGATATCTACCAGAGGTGTGTGCAGAGCACCCTGGACAGCCTGGGGTCACGCTCTCAGCTCGCCATGCTGCTATTTGAACAGGAACAAGGCAACAGTACTTAAAACCAAACTTTGAAGATCTTGAGATGGCCGAGAGGCGATAGACGGTTTGTTTTTTGTCCATTGGGCTGATGCTTTACTAGTAGCCGGTCTGTGGAGTCACAGTACTGGGCAAACAAAAATGCTGTCGGTACCAAAAGAAAgactaaaaacatttgaaatctatttaaaaatagcagatttttaaatgacaactgGATTTATGATTTGCTATCTTTTCTTTGGAGCAGGTTGGTTTATGTTGGCTCTTAAAGCAAGCAGCTGGTTGCTGTAGAAATGATCACTACCGTAACGTTTCTAAATCGCCGTGCCTTCAAAAATATGCTGTCCTTTCATAATACTTTTGTCTCGTCATCGCAGACACTTTTGCTCAAGCTGATTTGTTTAATGTAACAGGGTTTTTGTCGTATGAAGGAACCGTATCCAGATTCTAACAATGCTTCAGTCAGTTAACCCCCTAGTATTAGCTTGTTAAATCTACAGCTGATTTTAACAAGGTAAAAATCATTGTCTTATTCACCATTCGtgccaaaaaacaaatattgagaCAGTTTATTGACCGTTTCGAACACTATTTTGCCCAAAGTTTTAACCAGCGTGGTTCCATACTTTCTGAAATGTATGCTTGAATTCTGAACAGCAGAACACAGATGCAAATACctgcatataattattattatttttattttttttttaaccattgaAACCGCCTCAAAGAGATTTTTCTGATGAAACAAGTTAACTTTTGCACTAATACTTTCATAGCAAGTCCGTCTTGTATATCAGTAATGCTGCACAATACGCctgtcaaaacatttcattctgttctgGAAAGAATATAGGGTGCATTACATGGTTATAGTTAGTTCCTGTTCTGTCTACCAGAGAGGAGTGCAATACTAGTGCAATACTGTTCAGATGGTGTAGTGTATTGAGCCTGCTGATGGAAACACTCCAGATGAGTTGAACACATCTATTGAACATATTTCTGAAGATGCACTATAGAGAGCCTCTATTACGTACCATTCCAAACacttcacaaaacaaaatgtgttttcgTGACAGTATATTAGGTTATATAAGATAATTCCgatttgtttgtgtataaagATTTTGTAGGtctctggttttttttttttggtccctGTTTCTTGGTACAtgtgtttactgtatttacttagtgttgtgttaaaatgtttttggtatttttattattattattttttttatttaaacaatcaTAATCTCAATGCAGTACACTGACAACATCTTACAAAGTGACTTGTGTTACACAATATCATGATGCTGGATGTCAAATGATTTTGCGTACAAGAGCTGTGAAATAGGTTTTTACAACGTGCTATGTTTTGAACGTTTTTAAATGACACATGCACAACATGAATGAACGCATCACAAAATAAGCACAGATTAAAGCCGCTACTGGCCTTTAGGGGTCAGCAAAGGAGCATGGGAATACCTGCTCTCGGAAATGTAGAATTTCACAGGACTGTTTCTTAACCTCAcctttgttgattttttttttttcactaaatattCTTTATGAATCTgttgaattttgttttaatattattgtacaaaatttttaataaagattttattttaggg

Function

GO: NA

KEGG:

id description
K00747 CHPF; chondroitin polymerizing factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101765 lncRNA upstream 98584 8867139 ~ 8868277 (+) False fev
XR_006251839.1 lncRNA upstream 106482 8859473 ~ 8860379 (+) True LOC122352063
TU101758 lncRNA upstream 139815 8826212 ~ 8827046 (+) True G68808
XR_006251751.1 lncRNA upstream 351877 8600724 ~ 8614984 (+) True LOC122351403
TU101678 lncRNA upstream 460718 8502756 ~ 8506143 (+) False igf2bp2a
TU101845 lncRNA downstream 70461 9047460 ~ 9078537 (+) True G68879
TU101846 lncRNA downstream 86121 9063120 ~ 9064676 (+) True G68880
TU101861 lncRNA downstream 181277 9158276 ~ 9160821 (+) True LOC122351827
TU101871 lncRNA downstream 199325 9176324 ~ 9178926 (+) True G68895
TU101872 lncRNA downstream 203752 9180751 ~ 9184568 (+) True G68896
XM_043248266.1 mRNA upstream 95228 8867097 ~ 8871633 (+) True fev
XM_043249421.1 mRNA upstream 100556 8863387 ~ 8866305 (+) True cryba2b
XM_043248054.1 mRNA upstream 134959 8827690 ~ 8831902 (+) True umps
XM_043248053.1 mRNA upstream 142470 8801297 ~ 8824391 (+) True itgav
XM_043249543.1 mRNA upstream 168926 8793317 ~ 8797935 (+) True zc3h15
XM_043249573.1 mRNA downstream 165593 9142592 ~ 9150093 (+) True si:ch1073-416j23.1
XM_043249574.1 mRNA downstream 165593 9142592 ~ 9150093 (+) False si:ch1073-416j23.1
XM_043249171.1 mRNA downstream 179046 9156045 ~ 9159759 (+) False LOC122351827
XM_043249170.1 mRNA downstream 179052 9156051 ~ 9159985 (+) False LOC122351827
XM_043249639.1 mRNA downstream 466126 9443125 ~ 9566997 (+) True thsd7ba
TU101764 other upstream 100964 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 533378 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 624182 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU100736 other upstream 3001981 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 3081108 5883927 ~ 5885753 (+) True G68097
XR_006251841.1 other downstream 165593 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 165593 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
XR_006251853.1 other downstream 466126 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 1351732 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 2506438 11483437 ~ 11489996 (+) False LOC122352020

Expression Profile