RNA id: XM_043249166.1


Basic Information

Item Value
RNA id XM_043249166.1
length 2098
RNA type mRNA
GC content 0.50
exon number 18
gene id dars1
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9160309 ~ 9184553 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGTGAATGTGCAACAGCAAAACACTTCCACGCTTCTCCACATGTCCATCGTTCCCAGTGGCTGTCACTGTACATTAACAAGACTTTAATCCTCAATATCTAGTGCTTTTGTTTCACTGCATCCCTTCAGAGCCGAACTATGACTAAAGAAAATGTGCAAGGAGCCGCTGAGGAGGAGCAGCAAGCCCAATCAAAGAAAGCCCTAAAGAAACAGCAGAAGGAAGCAGAGAAAGCGGCGAAGAAGGCAGAGAAGCAGGCCAAGCTGGCTGCAGAGCAGCAGGAAGCTGATGAAGATGATTTTGCCAAGGATCGCTATGGGATCTGTCCTATGGTCCAATCCCAGCAGAAACTGGACAGGGCGTTGGTGCGTGTCCAGGACCTGACACCCGAGAAGGCAGAGCAGCAGATCTGGGTGCGCGCCAGAATTCACACCAGCAGAGCTAAAGggAAACAGTGCTTCTTGGTCCTGCGTCACCAGCAGTTTACCGTGCAGGCCCTGCTCGCCGTGGGAGATCGTGCAAGCAAGCAGATGGTCAAGTTTGCAGCTAACCTCACGAAAGAAAGCATCATTGATGTGGAGGCTGTGGTGAAGAAGGTGGAGCAGAAGATTGAGAGCTGTTCCCAGCAGGATGTGGAGCTCCATGTGGAGAGGATCTTTGTGATCAGCCAGTCTGAGGCCAGACTTCCCCTTCAGCTGGAAGATGCTGTCAGGCCAGAGGGAGAAGGAGACGAGGAAGGAAGAGCCACTGTCAATCAGGACACCAGACTGGACAACAGAGTTATTGATCTGAGGACCACGACCAGCCAGGCCATCTTCAGGCTGCAGTCAGGTGTATGTCAGCTCTTCAGAGACACGCTCATCAACAAGGGCTTTGTGGAGATCCAGACCCCCAAAATCATCTCTGCTGCCAGCGAGGGTGGAGCAAACGTCTTCACCGTCTCCTACTTTAAAACCAGTGCATACCTGGCCCAGTCCCCTCAGCTCTACAAGCAGATGTGCATTTGTGCTGACTTTGACAAAGTCTTCTGTGTCGGACCAGTGTTCAGGGCTGAGGACTCCAACACTCATCGCCATCTGACTGAGTTTGTGGGGCTGGATATTGAAATGGCTTTCAATTACCATTACCATGAGGTCATTGACTCCATTACTGACACCATGGTTCAGATCTTTAAGGGACTACGTGACCGGTTCCAGACAGAGATCCAGACGGTGAACAAGCAGTACCCCAGTGAGCCGTTCAAGTTCCTGGAGCCCACCCTGAGACTGGAGTATAAGGAGGCCGTGGCGATGCTCAAAGCTGCTGGGGTGGAAATGGGAGATGAAGAAGATTTGAGcACCCCTAACGAAAAGCTGCTTGGTCGTCTTGTGAAAGAGAAGtatgACACTGACTTCTATGTGCTGGACAAATACCCTTTGGCGGTAAGGCCGTTCTACACCATGCCTGACCCCAGCAACCCGAAATACTCCAACTCATATGACATGTTcatgagaggagaggagatcCTGTCTGGAGCTCAGAGAGTCCACGATGCCCAGCTGCTCACCGAGAGAGCAATGCACCACGGCATCGACTTGGAGAAGATCAAGGCCTACATTGACTCGTTCCGTTACGGAGCTCCTCCTCATGCTGGCGGTGGCATAgGTCTGGAGAGAGTGACCATGCTTTATCTCGGCCTACATAACGTACGTCAGACCTCCATGTTCCCTCGTGACCCCAAACGCCTGACCCCATAAAGATTAAAGCAGCCAGTCGGCTTCTCGTCCCCGTCCCGTCTGAAGCAGTAGAACCTCTCGGACACCCAGCCATCAGAGATCTGGACGTGCCAGGATGTGGAAGTGCCACGATTAACCGACACACATTCAGCCACTTTTATAATACTTATCACCAGTCACAACGGgatgttaaataaaactaatgtactTTGAAGGGAATCTACATTAACTGCTATATAATACAAGTGATATAGAgacatgtattattaaaatcactgtACGTGTAGGTGTTTTTCTACTGAAGATGTTCCTTGAAACCAGGTTTTTGAGAATtctaacaaataatttaaacaatacatGCACAATAAATGAACTAAGCGGTA

Function

GO:

id name namespace
GO:0006422 aspartyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004815 aspartate-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101819 lncRNA downstream 240563 8918541 ~ 8919746 (-) True G68857
TU101798 lncRNA downstream 335922 8822356 ~ 8824387 (-) True G68844
TU101797 lncRNA downstream 335922 8822765 ~ 8824387 (-) False G68844
TU101792 lncRNA downstream 342691 8816520 ~ 8817618 (-) True G68839
TU101782 lncRNA downstream 354904 8802385 ~ 8805405 (-) True G68830
TU101959 lncRNA upstream 53566 9238117 ~ 9238462 (-) True G68948
TU101996 lncRNA upstream 422753 9607304 ~ 9610739 (-) True G68981
TU102008 lncRNA upstream 447482 9632033 ~ 9642612 (-) False G68987
TU102006 lncRNA upstream 449312 9633863 ~ 9652602 (-) True G68987
TU102014 lncRNA upstream 453416 9637967 ~ 9652602 (-) False G68987
XM_043249577.1 mRNA downstream 5029 9150192 ~ 9155280 (-) False gmppaa
XM_043249576.1 mRNA downstream 5029 9150192 ~ 9155280 (-) True gmppaa
XM_043249164.1 mRNA downstream 111507 8978518 ~ 9048802 (-) True asic4a
XM_043248305.1 mRNA downstream 198935 8942859 ~ 8961374 (-) True wnt6b
XM_043248344.1 mRNA downstream 225978 8919863 ~ 8934331 (-) True wnt10a
XM_043249599.1 mRNA upstream 2026 9186577 ~ 9188474 (-) True cxcr4b
XM_043248972.1 mRNA upstream 426468 9611019 ~ 9626167 (-) False nxph2a
XM_043248973.1 mRNA upstream 427298 9611849 ~ 9626166 (-) True nxph2a
XM_043249502.1 mRNA upstream 473852 9658403 ~ 9669522 (-) False ttf2
XM_043249501.1 mRNA upstream 473852 9658403 ~ 9669522 (-) True ttf2
unassigned_transcript_1465 other downstream 819294 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 1065462 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 1142204 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 2011689 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 2899240 6246900 ~ 6261069 (-) True G68188
TU102057 other upstream 723637 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 1248956 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 1248956 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 1248956 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 1330721 10515272 ~ 10519457 (-) False fdx1

Expression Profile