RNA id: XM_043249179.1


Basic Information

Item Value
RNA id XM_043249179.1
length 4951
RNA type mRNA
GC content 0.44
exon number 8
gene id ikzf2
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19259729 ~ 19285223 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCTGCACATGAAGCATATAGAAAACACGCACACCGTCATCCCACTACCTTTGACGGAGTTTCAGACAGGTGGAAATATTGGGCTCTAAGCCTGTTGTAGGCAGTTCCCATCATTTCCTTATTTATGGCTTAATTCTCTTGGAACCGGTGGATCCAGTTGCCACAGCCTGACATCGATTGACCCAGGTGTTGAACAGGCACAGGTTTCACTTCACTATGTCAAAGCAGTTTCAGATCAGAGGAAGAAATCTAATAGTCGGGGGAAAAGCGCTTAGACGCGTGTGAAATGGAAAAGCTGACGGGCTTGTTCGGCGCGAAGGAAGTCACCAAAACATACAAACCCAAGCTCGCTtcctaacttttttttcttcttcttttttttcgttttgGTGCAAGATCGTCCCCTGTTTGTGACCAATATGAACTCCAGTTGAACATGACAGTCGTCAGAGGACTTCATCATTACAGTAGAGACTGAAAAGCCTCTGTCATTGGAAATTATCGACTGTTTTTACGCAAGGATTTCTTTGGACGCCTATTTGCGTTTTCGCAGGGGGGAGACCAAACAAAAAGTTCTGCCCCCTGAATATGGACATGGAGGCGTCGAATGGCTATATTGCAAGTAACGGCGACTGCTCTCCCAGGAAGGAGAACTCGAGAATGCTGGTGGACCTGTCGACCAGCACACCCAATGGCCAACGTTCCCAAAGTCCTGATTCCCCTGCTGCACGCACAATCAAGCAAGAGGAAGGTACTGAGGAGGAGACGGAGAGAAGGCCGGATGAGGCAGGTCACAGCGGTGAGGAaggctctggattggaggagcCCATGATTGACAGCCCAAATAACTTACAAGATGCTGGGcagggaacagaagtgcagagcGAGACGGGGATAAGACTGCCAAATGGTGACCGGCCGTTCCAGTGTAACCAGTGTGGGGTTTCATTCACTCAAAAGGGCAACCTACTGAGGCACATCAAGCTCCACACGGGAGAGAAGCCCTTCAAATGCCCGTTCTGCAGCTACGCTTGCCGCCGGCGCGACGCCCTGACCGGACATCTGCGCACACACTCAGTGGGCAAACCACACAAGTGTAACTACTGTGGGCGGAGCTACAAGCAGCGCACGTCATTGGAGGAGCACAAAGAACGGTGTCATAATTACTTGCAGAGCGTCGGCATGGACTCCGCCTCCAATCCTGGCCCATATCCAGGGGAGGTACCAAAGGAGCAGAGGCAACTGGAGGCCGCTGGGATGGTGGCTTTTGACCGGCCTCCTGTAATTGAAAGACTGCAGGGGAATGTGGGTAAACGGAAGAGCACCACGCCACAGAAGTTTGTGGGTGAGAAAATGGTTCGCTATTCGTACCCCGAGCTGAGCTATGAGATGGGCTCTAAGTATGAGAAGGAAGCTGAAGCGATGCATGCCCAATTGATGGACCATTCCATTACCAATGCCATCAACTACTTGGGCGCCGACTCCTTGAGGCCTGTGGTTCATCACCCATCCCTCTCCATGGCCGAAGTGCTGCCTATGGTGAACCCACTCTTCCATCCGATGTACCCACTTGGGCCCCGCATGGACCGTCCCAGCAGTCGCGAGCCTCCATCTCTGCCCCACCCAAACCCAGAGTTCCCGCACCCGACCAATGGCGCAATCCCATTACTCAGGCCCAAGAATCCTCAATCAGCCCGAGACGGGTCCCCGTGCAACAGCGGACAGGATTCGGCCGATTCGGCACGGAGCAGCCCCCGAGACAAGCTCGGCGGGGCCGGGCCCAGGACGAGGTCCAGCCCGGGGTTTGTCCGGGCAGAAGAAGGCAGGGCGATCGATGCCGCCCGCGTCGCCGCCAGGGACGGCGTCCGCGTCTTCGGCCGCGAAGGCCAGGAGCTGAGGGTGTTCCAGTGCGAACACTGCCGCGTCCTGTTCCTGGATCACGTCATGTACACCATCCACATGGGCTGCCACGGTTACAGAGACCCCCTCGAGTGCAACATCTGCGGCCACTGCAGCAAAGATCGCTACGAGTTCTCTTCGCACATCGTCCGCGGAGAACACACCTTTCGTTAAGAATCCCACGCACTCTCGCAGTCAGTCTACTGCCGAAGCATTACGTGAGCACCGATGGGCAGATATATGAAGGTTTGGGTCCGATAGAAAGTTTTCATGTTGAAGCTGTTTGAAGATTTTTGTTCTGGGTGAGGGAATGAGTATGTTTATGTTGTGAATGTTTTtcgttcttttgaattttttcaccCCACACACAGTTTATTGTTGCATATGTACTGAACCTTCCGACAGAGCAGCTATGTGTTATCTAAAGTTGTGaagttctttctcttttttttgtcatctgtaTTACCTCGATGCATGCTGTCATTCTGTTTATGGACCTTGATCAATATTACAGGTAAACCGAGCAACCAGAGGACCACTGGAGAACTAAACCGCTTAGTTTTGCATACAGAAAAAGACTAATTCATAGCTTCTTGCTGCTGTGGCTTCTTAGTGCCTTGCTAATGTTTCGAACGGCACGATTTTGCCTTTTATGGAGTGTTTTGTATCTTTTTAGCATCTATTCTCATCGCTCGCTCCCTTTCGATGAAGTTTTGGGGCGTATGAGCTGAAGCTTCGGTACTCGTGCTAATGTCCTCACAACGGTGCTATTCTAGTTTCACAAAAGCAGTCCAATCTTTTAGACACATTTTAATGAAGTGTTGAGGACAATCTCCCTTGTGTCTCATACGTTTTAACGGGAGACTTTTGCCGCGCTAAGGACAGATGAGTTTTCCACGCTGTGTTTTGCTGCTGTTGCACACTTCATGTGCGACACACATCATCTCTTGCGTTCTTATGCACTTCGCTGAAAACAGCACTGCGACATGCCTTGATAAACCTGTTTTTGCACTATTAGCTTGAGGCCTTGGGCGAAAATATGCTATTTCCATGCTATTGATAAAGCGAACAAAGGTCAGTGTGTAGTTTAGCTAGTATATTGTCATCTGTGATTCAACAGGGAACAAGTCTGCACCTATATTAACATGCTTTAACAACAGGGTTGCCATATTTTGGATTGAAATCTGTGAATTTCATTCAGCCTTCAGACCAAATGCCTCATTATCAATGCCTTGTTAAATCCAACTCCTCCGACTGTCTTCAGTGTTAACtcaaaaaaagagtttatattttatttttttggcccACACATGGACCTACagtatgtgttttatattaagcTTTCTAAGAGCTAAGATTTGAAATATGAGCTTACAAGCACTGCGTATGCATTTTTGGTTAGACTCTAGTTAGCTGATATCATTTAAGTAACCTTTGCACAGTGacagttgaaaaaaataaaaaaactgcctGGTAACAGAGTAAGGCCGATCTTTagaataaaacaacaacttttaccCAAACTGCACAAGAGCTTTAGAAGATAAAACGCGGTTTATTAATCAGACAATATTTTGCCCCTCTGAACATTTTTCCCATACTTGATGCAGAAACTTTTTTTCGCATTGTTTTCAGGGCATTGAAATCAGTCATATGTAGACTGTTTTGAATGTTCACGTAGCCGTTCACTCTGCTTTCCTGTTTCTCTtcccttctctttttctttacacaatgttgattcatttttacattgaGCCATCTGTAGCACAACCGTAAATCCAGCTTTAATTAATGCGTATGGCTTAAAGTGTACAAGCGCAGCCTTCATGACGTTCAGAACCTCCCTTGCACATTTGTTGGGCTTTTATGTCAGCGCTAACAGAGCCTTACATCACTATCAGACTTTGTTGTAcctattgttttttaaagctttgcttttgtcttttctgctttgagaaaaaaaaactgtgaatatGCCTTTAAACGATATGAGGAAAAAGACACAACAGCACTGGtagaaatgcattcattttgtttGAACACATCATTTATTGTTCTTTAAAATGCTTCTTTCATCTTTACACTTCCAAAAAATGTCACAAATCTCACTCGCATACCGCCTGTAACGTTTTGAAGAATTTTACTTGTTCTTGTGAAGCATGAAtatctttatgcattttttatttcttttaattttttctttttttctttttggattgGTGTCACATGCAGGCATGATGTTGAATGTGCTCCACAATTCCAGggcattttatagaaatattataaaagctTATTGTATATTagacattgtatttttttttcttttcttttctttccaaaAAGGAACAAGGTGAAGGAAACATTGATGTAAGACTATGTTTACAACCCGAATGAACAAGAGCACAAGAACAAAATGTGTTCTTACGATGAGTCCACACTTTTGGGAGTGGAGAGTACTTGAAATTACAAGAAAGGCACTCTAGAGTCAGGTTTCACTTTTTACCTTAAAGTGTATGGGACTGCTATTTTCTCAtctctgtaaatatatattttttgtgagaGAAAGGTGTTTTTTAACTGTTCTTATTCACTGTGGACCTTACAAACAGTAAGACAAGGGtttgcagtgtatttttatataagtgaataaatgtatgaattatatacagtatattttggTAAACATGTTGAAAGGGGGTAATCTTTTGCTGTGTGTCGGTTCGCTTTTTTGGGTTTTCTCAGGTACAGTGTTGTCAAAATCTTCTTATAAGGCATTTGTATGGAACTGTTGGagatatttgaataaatatttgaattgtttAGTACTATTTGACTTGAAATCCAAAGTCAGATatccaaataaatatatataaatctatatttttatgtttaaagatAGAAGTCTTATAAGTAAGTCCAAGGTTTACTGTTGTAAAACTGTTTCTGAGGTTGACTTTTGTAAACCTTGGCATCTTTAAGGAAAGTGTGTGTCGTTTTATGTTGGTTTTTAAAGCATGGGCTCTTCTGCATTAAATACTGTCATCATCTGAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251824.1 lncRNA downstream 5481 19251637 ~ 19254248 (-) True LOC122351981
TU105862 lncRNA downstream 286827 18911843 ~ 18972902 (-) False LOC122351248
XR_006251715.1 lncRNA downstream 286827 18941516 ~ 18972902 (-) False LOC122351248
XR_006251716.1 lncRNA downstream 286827 18941516 ~ 18972902 (-) True LOC122351248
TU105832 lncRNA downstream 517504 18737756 ~ 18742225 (-) True G71471
XR_006251712.1 lncRNA upstream 159418 19443445 ~ 19459100 (-) True LOC122351235
TU105981 lncRNA upstream 174760 19458787 ~ 19543847 (-) False G71587
XR_006251749.1 lncRNA upstream 212885 19496912 ~ 19508085 (-) True LOC122351387
XR_006251732.1 lncRNA upstream 235713 19519740 ~ 19525590 (-) True LOC122351304
TU105978 lncRNA upstream 253714 19537741 ~ 19543847 (-) True G71587
XM_043249273.1 mRNA downstream 10554 18980278 ~ 19249175 (-) True LOC122351886
XM_043249274.1 mRNA downstream 10555 18980278 ~ 19249174 (-) False LOC122351886
XM_043248514.1 mRNA downstream 369674 18885444 ~ 18890055 (-) True myl1
XM_043248798.1 mRNA downstream 539282 18709228 ~ 18720447 (-) True tgfbr2l
XM_043248378.1 mRNA downstream 610674 18642470 ~ 18649055 (-) True znf142
XM_043248417.1 mRNA upstream 262197 19546224 ~ 19568760 (-) False bard1
XM_043248416.1 mRNA upstream 262197 19546224 ~ 19568620 (-) True bard1
XM_043248803.1 mRNA upstream 285141 19569168 ~ 19634801 (-) False abca12
XM_043248802.1 mRNA upstream 285141 19569168 ~ 19634801 (-) False abca12
XM_043248801.1 mRNA upstream 285141 19569168 ~ 19634801 (-) False abca12
XR_006251863.1 other downstream 689847 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 2004238 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 2435954 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 2436035 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 3487865 15771421 ~ 15771864 (-) True G70663
TU106113 other upstream 436471 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 512230 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 597797 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 1205137 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 1205137 20489164 ~ 20503890 (-) True G71938

Expression Profile