RNA id: XM_043249188.1


Basic Information

Item Value
RNA id XM_043249188.1
length 2059
RNA type mRNA
GC content 0.48
exon number 11
gene id itgbl1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15492358 ~ 15524739 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGCTGGATTTGGCCAGCCCGTTCTCCCTCTGTTTTGGAAAGTGGAAATTCCTGAAGGCACTTCACTTCAGGTTTCTGGTGGGGATCTAAACATGCATGCAGAGACTTTGGTGAACTCTGTCTTAGTTTCTTTGCTTCTAATTTTGCTCTCTGCCGTTCAAGGAAGTTTACAGCAGTCGCTAAGGCAGGTGGGTGGAGAGTGTAAGATCTCCTCTGAATCATCACTGAGGCGCTGTCGGACCCCCGACGGTTTGATCTGTAGTgggagaggtgtgtgtgagtgtgggaTTTGCATATGCCAGGTCACAGAACCCGGAACGTTCTATGGACCGCGTTGTGAGTGCCATGACTGGATCTGTCCGACATATGATGGCAAGACCTGTGGAGATCGTGGGATATGCAACTGTGGAAAGTGTTTCTGTGATGAAAACTGGTTTGGGGAATCCTGTCAGTATCAGGAGGAATGTTCACTATCCAGTAAAATCAGTAAAGACCTCTGCCGTAATGCCCAGGGTGTCGTTTGCTCCAATGCAGGCACCTGTCACTGCGGCAGCTGCATGTGCCACAATCCCGATGGGAAGGGTCTGATCAGCGGACGCTACTGCGAGTGTGACGACAGCGAGTGTTTGGAAGAAGACTCTGGAGAAGTGTGTGGAGGCCATGGAAAGTGTTACTGTGGAAACTGTTACTGCTCGGCTGGTTGGCATGGAGATAAATGTGAATTCCAGTGTGACATCAGCCCATGGGAGAGTAAGCGGAGATGCACATCTCCAGATGGCAAGATCTGCAGCAACAGAGGCACATGCGTATGTGGCGAATGCACTTGCTATGATGTGGATCCCTCAGGAGACTGGGGGGACATTCACGGAGAGACCTGCGAGTGTGACGAGAGAAGCTGCCATGCCATGTACGACAGATACTCGGATGATTTCTGTTCAGGTCAGGGCCAGTGTAACTGTGGCAGGTGCGACTGCAAGGAAGGTTGGGCTGGAAAGAAATGCGATCATCCTCTCTCCTGCTCGCTGTCAGTGGAAGCCAGTCAGAAGAAGTGCCGGGGAACCTCCAGCCTGCCCTGCTTTGGCAGAGGGCAGTGTTTGTGCGGCCAGTGCACATGCCACCCACCCGGAGATAAACGCGTACACGGCAAGAACTGTGAGTGTGACGACAGGCAGTGTGAGGACCTGAACAGAGAGATCTGTGGAgGCCACGGCTTCTGCTCGTGTGGCCGCTGTATCTGCGGTGATGGATGGTTTGGGAAGCACTGCCAGTTCCCCCGCAGCTGTGACATGACGGACGAGCAGAGCAAGAGCCTATGCGAGACGGCCGACGGCATCATATGCTCTGGAAAAGGCTCTTGTCACTGTGGTCGCTGTATCTGCTCACCACAGGAGTGGTACATTTCAGGGGAATTCTGCGAGTGCGACGACAGGGAGTGCGACAAACATGACGGGCTGGTTTGCACAGGGAACGGCGTGTGCAACTGCGGAAATTGTGACTGCTGGGATGGCTGGACAGGAAACGCCTGTGAAATCTGGGTTGGAGAGGAGTATTAACCCCTGGTAGACACACTTAAAGACTGTTTCTGTTGTCAATCAAGAAAAGAAAGTTGTGGCTGCGGCAACAGCGAACAACGGAAAATTGATTTTAGAGATCTGCGCAATATAATGGCATTCGCATTTTCTTAAAGCAATGTGGTGTAAATTCCATTATTTGCACATAAAACAGCTGTGGAAGATGACATTTATAATCCTCTATAGTTTTccatatagctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatatatatatgaaaattgtGTATAATAATGCTTACATTGAATAACACTATTGACTATAAGGAGAGGATCCaagtaaaagtattttattactattcAGGTTGCTGTTTTTCAGAGCTCTGCTTATGTGCAATGATTTTATGAGCCTAGTTTGTGTACGGTAAGTTCCATGTGACAAAAGATGTAAACAGCCTGATTCCAATAAATTTACCATACTCTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104279 lncRNA upstream 175684 15307487 ~ 15316674 (+) True G70478
XR_006251734.1 lncRNA upstream 185968 15299852 ~ 15306390 (+) True LOC122351314
XR_006251735.1 lncRNA upstream 185968 15299852 ~ 15306390 (+) False LOC122351314
XR_006251736.1 lncRNA upstream 185968 15299857 ~ 15306390 (+) False LOC122351314
TU104278 lncRNA upstream 224843 15241778 ~ 15267515 (+) True G70477
XR_006251799.1 lncRNA downstream 156264 15681003 ~ 15683022 (+) True LOC122351790
TU104438 lncRNA downstream 164459 15689198 ~ 15692187 (+) True G70603
TU104562 lncRNA downstream 374712 15899451 ~ 15901694 (+) True rabl3
TU104601 lncRNA downstream 439081 15963820 ~ 15964664 (+) True G70715
TU104581 lncRNA downstream 449742 15974481 ~ 16012154 (+) True G70700
XM_043249243.1 mRNA upstream 66997 15401130 ~ 15425361 (+) False si:ch211-168k14.2
XM_043249244.1 mRNA upstream 66997 15401130 ~ 15425361 (+) False si:ch211-168k14.2
XM_043249246.1 mRNA upstream 66997 15401130 ~ 15425361 (+) False si:ch211-168k14.2
XM_043249245.1 mRNA upstream 66997 15402811 ~ 15425361 (+) False si:ch211-168k14.2
XM_043249250.1 mRNA upstream 66997 15406555 ~ 15425361 (+) False si:ch211-168k14.2
XM_043248731.1 mRNA downstream 110846 15635585 ~ 15637475 (+) False cfap97d2
XM_043248732.1 mRNA downstream 110846 15635585 ~ 15637474 (+) True cfap97d2
XM_043248718.1 mRNA downstream 112819 15637558 ~ 15655957 (+) True pikfyve
XM_043248722.1 mRNA downstream 112819 15637558 ~ 15655957 (+) False pikfyve
XM_043248721.1 mRNA downstream 112819 15637558 ~ 15655957 (+) False pikfyve
XR_006251807.1 other upstream 67319 15401128 ~ 15425039 (+) False si:ch211-168k14.2
XR_006251758.1 other upstream 1810367 13676163 ~ 13681991 (+) False ccnt2a
unassigned_transcript_1467 other upstream 2068532 13423714 ~ 13423826 (+) True trnal-caa
TU103281 other upstream 2187767 13289693 ~ 13304591 (+) True G69834
unassigned_transcript_1466 other upstream 2383862 13108415 ~ 13108496 (+) True trnas-cga_5
TU104429 other downstream 183497 15708236 ~ 15711177 (+) False LOC122351678
TU104501 other downstream 209853 15734592 ~ 15746106 (+) False plcl1
TU104743 other downstream 1203768 16728507 ~ 16731361 (+) True G70814
TU104753 other downstream 1221160 16745899 ~ 16749695 (+) False mpc2b
TU105078 other downstream 1392022 16916761 ~ 16919290 (+) True si:ch211-218d20.15

Expression Profile