RNA id: XM_043249207.1


Basic Information

Item Value
RNA id XM_043249207.1
length 1917
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC122351849
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18649212 ~ 18652922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATCTCACCTAAAAGAACCATTTGTTCAATCATCACTGAGAGACTACGCTGGGTTAATGTAGAAAAGGTCTGCTTTATTACATCTTATTCGCGTATTTTTCGTATATTGTAAGTAATTATAGAGATTGTAAAATGCGGTGTGGTATTTGCTCAGCTGTAAGTATAGAGAGTTTTTAAATTtgcagttatttaaataaaaagatagacCTGATCAGTGACAGCTTCCCATAATGTCTTACCAATGGTcttatcaaaattaaaatgaaaatggtttcAGCTCCTCTGCTGTGAATGTAGGCTGCATACTGCAaatgaagggggaaaaaagcttttattgaCTGAATAAGAGAATCTGAGGACACTTCAACATGACCCTGTCAGATTTTCTGGGAGCCCTAAAGGACAACCCTTACTTTGGGGCAGGATTTGGATTAGTTGGTGTTGGCACAGCACTTGCAGTTGCCAGAAAAGGTGCACAGGTCGGCATGATCTTCTTCAGAAGACATTACATGATCACGCTGGAGGTCCCAAGCAGAGATAAAAGTTACCACTGGCTCTTAAGCTGGATCACTAAACATGCCAAACACACCCAGCATCTGAGTGTAGAGACCTCGTACATGCAGCATGAGAGTGGACGAGTCCATACACAGTTCGACTTCCATCCGAGTCCAGGGAACCACATCATTTGGTATGGCAGGAAGTGGATCAGAGTGGAGAGGACCAGAGAGAAGCAGATGGTGGACTTGCACACTGGAACGCCCTGGGAGTCCGTCACCTTCACTGCTCTGGGCAGAGACCGGCAGTTATTCTTCAACATACTTCAAGAAGCACGTGAACTTGCTTTAAAGCAGGAAGAGGGCCGTACTGTGATGTACACCGCACTCGGAGCAGAGTGGAGGCCGTTCGGGTTTCCTAGGCGAAGACGACCTCTGTCTTCAGTAGTGTTGGAGAATGGTGTGGCGGAGAGGATAGTGGATGATGTGAAGGAGTTCATTGGCAATCCTAAGTGGTACACTGACAGAGGCATTCCATATAGGAGAGGATATCTGCTGTATGGACCCCCGGGCTGTGGAAAAAGCAGCTTCATAACTGCATTAGCAGGCGAGCTGGGATACAGCATCTGCCTGATGAGTCTCAGCGACCGCAGCCTGTCTGACGATCGCCTCAACCACCTGCTGAGCGTGGCTCCACAGCAAAGCATCATCCTGCTCGAGGATGTGGATGCAGCCTTCGTCAGCCGAGAGCTGCTGCCTACGGAGAATCCACTGGCCTATCAGGGCATGGGTAGACTTACTTTCAGTGGACTTCTGAATGCTCTGGATGGAGTGGCATCTTCAGAGGCCCGAATTGTGTTCATGACAACTAATTTCATTGAGAGACTTGATGCGGCACTTGTCCGCCCTGGCCGTGTTGATATGAAGCAGTATGTGGGCTGCTGCTCTCACTGGCAGCTGACTCAGATGTTCCGGAGGTTTTACCCTCAGGAGTCCGCAGCTGAGGCAGAGCGGTTTGCAGAGCAAGCGCTGGTAGCACACACAGAGCTCAGCGCCGCTCAGGTGCAAGGACACTTCATGCTCTACAAGACAGACCCTGCTGGCTccatcaaaaacatttcagagaTGAAGGTGTGAATACTATACAGACAGTACAGACTTTTGTATAATGCAGACTGACCCAGCGGGCGAGTTATAAACAGaattaatgaatcattctttGAAATTTACACCTGGATGAAGGGTCTTCACACACTGgagtaataaaatctaaaataattgtgaaaattTGTCTATTTCTTCaattgttgctgttattggtTAAGCAACAACAGATGCACTGTTTATTACACATCGTCTTTTCTGTGATTTACAGGAATGTGTTTCTCTTGCAGATGACCAGTAAATTATTGTCTTCCTGAGA

Function

GO:

id name namespace
GO:0034551 mitochondrial respiratory chain complex III assembly biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K08900 BCS1; mitochondrial chaperone BCS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105574 lncRNA upstream 105233 18543774 ~ 18543998 (+) True G71334
TU105573 lncRNA upstream 107895 18540883 ~ 18541336 (+) True G71333
TU105571 lncRNA upstream 110531 18538480 ~ 18538700 (+) True G71331
TU105387 lncRNA upstream 618683 18028361 ~ 18030548 (+) True G71221
TU105314 lncRNA upstream 1006793 17641910 ~ 17642438 (+) True G71167
TU105770 lncRNA downstream 94989 18747911 ~ 18892052 (+) True G71442
TU105772 lncRNA downstream 164216 18817138 ~ 18892052 (+) False G71442
XR_006251757.1 lncRNA downstream 237001 18889923 ~ 18893969 (+) True LOC122351431
TU105801 lncRNA downstream 240629 18893551 ~ 18893849 (+) False LOC122351431
TU105813 lncRNA downstream 327391 18980313 ~ 18985811 (+) True G71457
XM_043248379.1 mRNA upstream 6745 18635108 ~ 18642486 (+) True plcd4b
XM_043248380.1 mRNA upstream 22817 18620886 ~ 18626414 (+) True ddx18
XM_043249635.1 mRNA upstream 29844 18611996 ~ 18619387 (+) True tfcp2l1
XM_043249616.1 mRNA upstream 38303 18550275 ~ 18610928 (+) True clasp1a
XM_043249206.1 mRNA downstream 149 18653071 ~ 18657710 (+) True LOC122351848
XM_043249209.1 mRNA downstream 6843 18659765 ~ 18662870 (+) True LOC122351850
XM_043249084.1 mRNA downstream 10429 18663351 ~ 18674738 (+) True LOC122351791
XM_043249083.1 mRNA downstream 10434 18663356 ~ 18674738 (+) False LOC122351791
XM_043248163.1 mRNA downstream 22229 18675151 ~ 18682202 (+) True lss
XR_006251742.1 other upstream 8051 18635106 ~ 18641180 (+) False plcd4b
XR_006251851.1 other upstream 29844 18611995 ~ 18619387 (+) False tfcp2l1
XR_006251852.1 other upstream 29844 18611996 ~ 18619387 (+) False tfcp2l1
TU105623 other upstream 96349 18550278 ~ 18552882 (+) False clasp1a
XR_006251866.1 other upstream 100624 18548481 ~ 18548607 (+) True LOC122352188
XR_006251718.1 other downstream 29750 18682672 ~ 18688242 (+) False lmln
XR_006251717.1 other downstream 29750 18682672 ~ 18688223 (+) False lmln
TU105802 other downstream 248707 18901629 ~ 18907047 (+) False cps1
TU105807 other downstream 264648 18917570 ~ 18920415 (+) False cps1
TU105976 other downstream 968362 19621284 ~ 19621493 (+) True G71585

Expression Profile