RNA id: XM_043249222.1


Basic Information

Item Value
RNA id XM_043249222.1
length 4424
RNA type mRNA
GC content 0.36
exon number 1
gene id LOC122351856
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11392240 ~ 11396663 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atatatatatatatatatatatatatatatatattttctgccTGCACACAGTTTACTaacacaccttttattttatatgtattttgttttgatcGGCTACTTTCGGTTAATATACCTTTACTGAAACATGCTGAGTTGTCTTAAATTCCCTAAAATGCTAGTAATTCCAAGACCAAtgtaaagtgaaatatttaataacataataaaacatacattacaTATGTCAAGTAGGTTGAATGTaagataatttatttaaatgttactttgtATACTCATAATTGTGATGGACATTTTGCttcttaaattatttatgtatgataCTGAAAATTTATACTTCCTTTGTAAAGCCTTTTTTACCATGTTTGAGCAATGGGATTTTCCATGTACATGGGGATCAAAACAATgggtatttcatttttttaaattgctttaaattactcaacatttaaacattacCATAAACATTGCTTACAAGCtctcaaaagtttgggattgccatttcatgcagtgtgttttacttttttgttgttgttggtggtggtgatatttatatgcaaaacaCCATAAATAAAATAGGCATATTCCAAATCTTGATGTCAGATCTTGATCCTAGCAAACTTTAAAAtgccatgattttttttactacacCAGGAGCTGATTACGTTTTGCTGTGTAATCAGGCCCTGCATGAGAATAATTCTTATGAGACTGCTCTTAAATTGGCTTATTTAGGGTTTCATTAACCTTCTtccaataaatattacaaagtgctgtaattcaataaaattattctgcttaataataatgactAAATGGCTAGATGGTTAATTTCCCTTTAAGTCCTAGTACATATGTATTAATGCAACAGATAAAGAAGGCAAGAGACTAAGAGTCATACATTAATAGAACGTGGAAACAGAAAAGGGAAGTCTAGTTCTTATTCAAATGTTCTCACATGGTTAATTACCTCCAGTCAAAGACAAAACAGCTATTGAAGATCATTAAAGGAGTTGAAGATGTTGCCACTGTTCTCACTTTTCATATTGTTTCTGAAGACTTCATGTGTATGTTCTTGGCTTGCTGGTAAATGCCTGTTCTACAGTGATGTGGAAGAGTTTGCTGTTTCCACGACCTGTCCTGGAAAGACAAACGTTGCAGAGTGCCATCATGTCACTGACATTAAAGAAGATCTGCGTGGACTTCCATCAAACTTGCTTAACCTCTGCATTAAAGTGGAACAAGGCTGTCATGGTGCCCTGACTCCAGGCTCATTCTCACGGTTTGTTTCTTTGGAATACCTTGAAATTGCTGGATGTTTTTCAGAGATCCCTCCAGAGGCTTTTAATGGATTGACCAATGTTACTTCATTAACATTGTCTTACTTGTCTTCAGAAATCTGTTGTGAGGTAGCTCTTGATTTCAGTCATCTTCTGTCACTTAACTCTTTGTCTCTTTCGCGGTACAGTTTATCATTATTGGcaccaaatgtttttgaaacagcTCCTCAGTTGcaagaaataaacatacttaatgtgtgtttaaaggaTATATCTGAGGTCCTCTGTCGACTGACAAAAGCATCATCCCTGAAGCTGTTTAATCTAAGGGAATATGAGCTACACAGACTTCAGTACCCAAACTGCTCAATGTTCAACACTTCTGATGCTCAGATACCGACTACTTTCAATATTGAAGAGTTGCATTTGTATCTAGGACGAGTAGATCATATAGACGAGGGAGCCTTAGACGTGTTGGGAAACCTCTCCGTTTTGGAATTTGTTTCAAACAATGATTTCCTCAGAGATCTTTCTTTAATTGGAGTTCATAAAATCAATACTTTAAACATCAGAGTAAATGAACTTAACGTTGATGACTTGTGTACAGCAGCAAAGTTATATTCAGTTGTGTCTTTAGACATTCGTTATATGACTATTCAGTTGCCACCAACTCCAATTAATATATCAGATGGCTGTAAGGATATTAAGAGAATTAATCTCAAGGGTAACATATTGATAGCCAAGATTGTAAATGTCTTAGATGTGCATTCAGTGTTTCAGATTTTCAGAAATCTAACTATTGTGAGCATAGTTAAGCATGTACTCAGACCAAATGATTTCCTATCTCTATGTGATTCATTTCCACAGACAGtcaaaaatctttcttttatgATGCTAAGCACCAACAACATAGATAAGATAGTATCCCaccaatatttctgttttgcagATCTTGAAATTCTGTACTTATCCAAAAGTGACATTTCTAGAATAGAAGATTTTGCTTTTATTGGACTGCACAAGTTAAAAGAACTAAAACTCAGTGAAAACAAGTTATCttacatttctcaaaaaatgTTCAGTGGTTTATATAGACTTCTGGTCTTAGATCTCCAAGAAAATCCTATAATTAATATTGAACCAAAATCATTTGGACATCTCATTAACCTTTGTTCAATTCTGCTGGGAGATCTGAACTTTCCACCTGATGTGCCTCTGATCAGACTGCATTTTTCTGACATGTTTGAAGTTATTCCATATaatttaagtaatgtttttattagttcagGCGTGAGGCCAATGCAGCTAGTGATCGGAAACAATGCTACAGTGGGTCAGGGTCTAAACTTACACATCAAAAGTAAATATGTGACCGTTGAGGACTGCAACAGTTCTCTCTTAAAATCAGTAGTCAGTCTTAAGATAAATGCAGCATATGTGAACTGTGGAAATGAATTCATTGGGAAATATATCAGATCTGTTGTCAATCTGGAATTTGAATCAATGTTCTCAGACAGCATTGGAGACTTGGCTGTAATCAATCagcttgttcatttaaaaacccTAAAACTGGAAAATATTGACCTGACGAAGCAGCCAAACCTTGCCATAATGTTTCACAATCTGACAAAACTCCAGACGCTGATCCTGACAAACTGCAGAATGTTCTTTCTGGATGAAAGTCTGACCAAAGACTTGAAAGCATTGAAGGGTCTAGTGCTTATGCCAAAAGATAACATCAACGTTCTTCAAAACTTGATGGAACATCTCACTAGCTTGAAGTACCTCTATCTTCTAAACTTGGGTCTGTACTGCAATTGTGGTAATGCATGGCTGGTCTCATGGGCAAAGGACAACAGGAAGGTGCAGGTTGCCATGTTCAGGCCCTCCATGAAAGAACTGCAGTGTTTCACCGAGAATGAAATTGGCGACCTCAACTTTGTTGCTTATTCCAAGAGCTGCTCATTTGATATTGAATTTATATTCTTCACCTCCACCTCAGCATTTTTGTGTGGTTTTATTATAGTTGTCCTGTCATATAAGTTTGCAGGTCAATACGTTGCGCCATTCTTTCACATTGCCAGCGGATGGTTTCTAGAGGCTTTGCGCATGAACAGTAAACACCAGTACCGCTATGACGTTTTTGTGTCTTACAGCAGTAAGGATGAGCACTGGGTCATTGACAAACTTCTTCCAAACTTAGAGCAGCGGGGCCCTCCGTTTTTGCGTCTCTGCCTGCACAGTCGAGACTTTCAGTTGGGACAAGATATTGTAGAAAACATTACGGACAGCATCTATGCAAGTCACCGGACTCTTTGTCTCGTCAGTCACAACTACCTCGGCAGCAACTGGTGTTCCTTGGAGATGCAGCTGGCCACGTACAGGCTTCAAGTGGAACACAGGGACATTCTCATCCTGGTCTTTCTAGAAGGGATTCCGTCTCGCTTGCTATCCTCTCATCATAGATTGGCCCGTCTGGTAAAAACTAGAACTTATCTAAACTGGCCACGGGACCTGGAGATGCATGAAGCATTCTGGGATAGGTTGTGGTGTAAACTGAGCTCTAATGAAACCAACTAGTATAAGGTTGTTTAGGGTTTAGCTccatgggaaaaaaagaaattcaacgACAGATGGGTAAGAAAACAAAATCTCTAAAACACTGATATTAAAAGCATAATcaagtaaaactatttttgtacctgtatttacttttttagcatgtataaaaaatgtttagcatGTGTAATATTGAATATGATTCATTGGGCAAACATGATATTTGGCTTTTGCAGTTAATCATTTCACATCTTTTAAAGTGTAGCACACTTTACAATTTTTATCAATCACTTTGGTTCAGTtctaaaaaataacttttttttttttttaataataagttcAAATGTGAACGATTAGTTTCTTGTTCACATCAGATTTTGatttattagtaatttaaaCACTGTGTTTTTGGAACGTGTACAAATGTCTACACTTTTGACAATAACTAACATTCTAAATTTCACAtgtgtgaaaataaaagtattatttttccCTTTGACTAaaaaattttactaaaaacagaaaaaaaagcaatactgAAACTTGTTGGTTATGTGTATATGGTTACATGCTGGAAACTTTTGGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102742 lncRNA downstream 26421 11358950 ~ 11365819 (-) True G69467
TU102615 lncRNA downstream 361747 11029377 ~ 11030493 (-) True G69396
TU102576 lncRNA downstream 438255 10947044 ~ 10953985 (-) True G69362
XR_006251755.1 lncRNA downstream 445496 10939979 ~ 10946744 (-) True LOC122351427
TU102798 lncRNA upstream 13 11396676 ~ 11493120 (-) False LOC122351858
XR_006251827.1 lncRNA upstream 394118 11790781 ~ 11954234 (-) True LOC122351998
TU102924 lncRNA upstream 689051 12085714 ~ 12156439 (-) False G69596
TU102926 lncRNA upstream 689051 12085714 ~ 12156439 (-) True G69596
XR_006251707.1 lncRNA upstream 871449 12268112 ~ 12270147 (-) True LOC122351183
XM_043249223.1 mRNA downstream 2862 11386377 ~ 11389378 (-) True tlr20.4
XM_043249309.1 mRNA downstream 160552 11225956 ~ 11231688 (-) True lcmt2
XM_043248821.1 mRNA downstream 175586 11210200 ~ 11216654 (-) True rab5b
XM_043249581.1 mRNA downstream 187272 11193693 ~ 11204968 (-) True armc8
XM_043249582.1 mRNA downstream 187298 11193693 ~ 11204942 (-) False armc8
XM_043249224.1 mRNA upstream 3 11396666 ~ 11399215 (-) True LOC122351858
XM_043248236.1 mRNA upstream 3888 11400551 ~ 11404296 (-) True gtpbp8
XM_043249495.1 mRNA upstream 57406 11454069 ~ 11464414 (-) True LOC122352021
XM_043248275.1 mRNA upstream 100284 11496947 ~ 11500495 (-) True LOC122351308
XM_043249140.1 mRNA upstream 586305 11982968 ~ 12000692 (-) True efnb2a
XR_006251823.1 other downstream 705613 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 872783 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 950368 10433507 ~ 10441872 (-) False trim13
TU102802 other upstream 100347 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 770328 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1025766 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 1311968 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 1341381 12738044 ~ 12738171 (-) True LOC122352189

Expression Profile