RNA id: XM_043249223.1


Basic Information

Item Value
RNA id XM_043249223.1
length 3002
RNA type mRNA
GC content 0.39
exon number 1
gene id tlr20.4
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11386377 ~ 11389378 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCTTATTCAAATGTTCTCACATGGTTAATTACCTCCAGTCAAAGACAAAACAGCTATTGAAGATCGTTAAAGGAGTTGAAGATGTTGCCACTGTTCTCACTTTTCATATTGTTTCTGAAGACTTCATGTGTATGTTCTTGGCTTGCTGGTAAATGCCTGTTCTACAGTGATGTGGAAGAGTTTGCTGTTTCCACGACCTGTCCTGGAAAGACAAACGTTGCAGAGTGCCATCATGTCACTGACATTAAAGAAGATCTACATGGACTTCCATCAAACTTGCTTAACCTCTGCATTAAAGTGGAACAAGGCTGTCATGGTGCCCTGACTCCAGGCTCATTCTCACGGTTTGTTTCTTTGGAATACCTTGAAATTGCTGGATGTTTTTCAGAGATCCCTCCAGAGGCTTTTAATGGATTGACCAGTGTAACTTCATTAACATTGTCTAACTTGTCTTCAGAAAGCTGTTGTGAAGTAGCTCTTGATTTCAGTCTTCTTCTGTCTCTTAAGTTTTTGACTCTTTATGAGTATAGTTTATCATTATTGGcaccaaatgtttttgaaacagcTCCTCAGTTGcaagaaataaacatacttgATGTGTGTTTAAAGGATATATCTGAGGTCCTCTGTCGACTGACAAAAGCATCATCCCTGAAGCTGTTTAATCTAAGGGAATATGAGCTACACAGACTTCAGTACCCAAACTGCTCAATGTTCAACACTTCTGATGCTCAGATACCGACTACTTTCAATATTGAAGAGTTGCATTTGTATCTAGGACGAGTAGATCATATAGACGAGGGAGCCTTAGACGTGTTGGGAAACCTCTCCATTTTAGACTTTGTTTCAAACAATGATTTCCTCAGAGATCTTTCTTTAATTGGAGTTCATAAAATCAATACTTTAAACATCATAGTAAATGAACTTAATGTTGATGACTTGTGTACAGCAGCAAAGTTATATTCAGTTGAGTCTTTAAAAGTTCTTTATGAGACTATAAACTTTCCACCAACTCCAACTAATATATCAGATGGCTGTGAGGATATTAAAAGACTTACGCTCAGAAATAACTTATGTACGTATGAGATTGTAAATGTCTTAGATGTATATTCggtttttcagattttcagaaATCTTACTATTGTTAACATAATTAGGCATGTGCTCAGACCAAATGATTTCCGATCTCTTTGTGCTTCATTTCCACAGACAGTACAACAACTTTCTGCTATGATACTTTGCTCAAATAACATAGATAAGATAGTATCCCaccaatatttctgttttgcagATCTTGAATTTCTGGACTTATCCATAAGTAACATTTCTAGCATAGAAGAGTATGCTTTTATTGGACTGCACAAGTTAAAAGAACTAAAACTCAGTGAAAACAAGTTATCttacatttctcaaaaaatgTTCAGTGGTTTATATAGACTTCTGGTCTTAGATCTCCAAGAAAATCCTATAATTAATATTGAACCAAAATCATTTGGACATCTCATTAACCTTTGTTCAATTCTGCTGGGAGATCTGAACTTTCCACCTGATGTGCCTCTGATCAGACTGCATTTTTCTGACATGTTTGAAGTTATTCCATATaatttaagtaatgtttttattagttcagGCGTGAGGCCAATGCAGCTAGTGATCGGAAACAATGCTACAGTGGGTCAGGGTCTAAACTTacacattaaaagtaaatatgtgACCGTTGAGGACTGCAACAGTTCTCTCTTAAAATCAGTAGTCAGTCTTAAGATAAATGCAGCATATGTGAACTGTGGAAATGAATTCATTGGGAAATATATCAGATCTGTTGTCAATCTGGAATTTGAGTCAATGTTCTCAGACAGCATTGGAGACTTGGCTGTAATCAATCagcttgttcatttaaaaacccTTAAACTGGTGAACATTGAATTGATGAAGCAGCCAAACCTTGCCATAATGTTTCACAATCTGACAAAACTCCAGACGCTGATCCTGACAAACTGCAGAATGTTCTTTCTGGATGAAAGTCTGACCAAAGACTTGAAAGCATTGAAGGGTCTAGTGCTTATGCCAAAAGATAACATCAACGTTCTTCAAAACTTGATGGAACATCTCACTAGCTTGAAGTACCTCTATCTTCTAAACTTGGGTCTGTACTGCAATTGTGGTAATGCATGGCTGGTCTCATGGGCAAAGGACAACAGGAAGGTGCAGGTTGCCATGTTCAGGCCCTCCATGAAAGAACTGCAGTGTTTCACCGAGAATGGAATTGACCATCTCAACTTTGTTGATTATTCCAAGAGCTGCTCATTTGATATTGAATTTATATTCTTCACCTCCACCTCAGCATTTTTGTGTGGTTTTATTATAGTTGTCCTGTCATATAAGTTTGCAGGTCAATACGTTGCACCATTCTTTCACATTGCCAGCGGATGGTTTCTAGAGGCTTTGCGCATGAACGCTAAACACCAGTACCGCTATGACGTTTTTGTGTCTTACAGCAGTAAGGATGAGCACTGGGTCATTGACAAACTTCTTCCAAACTTAGAGCAGCGGGGCCCTCCGTTTTTGCGTCTCTGCCTGCACAGTCGAGACTTTCAGTTGGGACAAGATATTGTAGAAAACATTACGGACAGCATCTATGCAAGTCACCGGACTCTTTGTCTCGTCAGTCACAACTACCTCGGCAGCAACTGGTGTTCCTTGGAGATGCAGCTGGCCACGTACAGGCTTCAAGTGGAACACAGGGACATTCTCATCCTGGTCTTTCTAGAAGGGATTCCGTCTCGCTTGCTATCCTCTCATCATAGATTGGCCCGTCTGGTAAAAACTAGAACCTATCTAGACTGGCCACGGGACCCAGAGATGCATGAAGCATTCTGGGATAGGTTGTGGTGTAAACTGAGCTCTAATAAAACCAACTAGGCTTTATTGATGTATATTGTAAAGTTTTGATAAaaccctaaaaaaaataatacatttagaaaatgaatGAGGAAAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102742 lncRNA downstream 20558 11358950 ~ 11365819 (-) True G69467
TU102615 lncRNA downstream 355884 11029377 ~ 11030493 (-) True G69396
TU102576 lncRNA downstream 432392 10947044 ~ 10953985 (-) True G69362
XR_006251756.1 lncRNA downstream 439633 10930480 ~ 10946744 (-) False LOC122351427
TU102798 lncRNA upstream 7298 11396676 ~ 11493120 (-) False LOC122351858
XR_006251827.1 lncRNA upstream 401403 11790781 ~ 11954234 (-) True LOC122351998
TU102924 lncRNA upstream 696336 12085714 ~ 12156439 (-) False G69596
TU102926 lncRNA upstream 696336 12085714 ~ 12156439 (-) True G69596
XR_006251707.1 lncRNA upstream 878734 12268112 ~ 12270147 (-) True LOC122351183
XM_043249309.1 mRNA downstream 154689 11225956 ~ 11231688 (-) True lcmt2
XM_043248821.1 mRNA downstream 169723 11210200 ~ 11216654 (-) True rab5b
XM_043249581.1 mRNA downstream 181409 11193693 ~ 11204968 (-) True armc8
XM_043249582.1 mRNA downstream 181435 11193693 ~ 11204942 (-) False armc8
XM_043249406.1 mRNA downstream 289696 11089670 ~ 11096681 (-) True idh1
XM_043249222.1 mRNA upstream 2862 11392240 ~ 11396663 (-) True LOC122351856
XM_043249224.1 mRNA upstream 7288 11396666 ~ 11399215 (-) True LOC122351858
XM_043248236.1 mRNA upstream 11173 11400551 ~ 11404296 (-) True gtpbp8
XM_043249495.1 mRNA upstream 64691 11454069 ~ 11464414 (-) True LOC122352021
XM_043248275.1 mRNA upstream 107569 11496947 ~ 11500495 (-) True LOC122351308
XR_006251823.1 other downstream 699750 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 866920 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 944505 10433507 ~ 10441872 (-) False trim13
TU102802 other upstream 107632 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 777613 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1033051 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 1319253 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 1348666 12738044 ~ 12738171 (-) True LOC122352189

Expression Profile