RNA id: XM_043249256.1


Basic Information

Item Value
RNA id XM_043249256.1
length 537
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC122351874
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14189604 ~ 14190624 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGGAAAgATCATCTTCTACGAGGACAGGAACTTCCAGGGGCGCAGCTATGACTGCATGAGCGACTGCACTGATATCTCCTCTTACCTGAGCCGCGTGGGTTCAATCAGGGTGGAGAGCGGTTGTTTCATGGTCTATGAACGCAACAGCTACATGGGTAACCAGTTCTTCCTGAGGAGGGGCGAGTACCATGACATGCAGCGCATGATGAGCATGGGCATGATGTTTGACACTATCAGATCCTGCCGCATGATTCCTTCAtacagAGGATCCTTCAGAATGAGGATCTACGAGAGGGACAACTTCGGAGGTCAGATGTACGAGCTGATGGATGACTGTGACAGCATCATGGAGCGTTATCGTATGTCCGACTGCCAGTCCTGTCATGTGATGGACGGTCACTGGCTCATGTATGAGCAAGCCCACTACAGAGGCAGGATGGTGTACTTCAGACCTGGAGAGTACAGGAGCTTCAGAGATATGGGATACAGCAACATGAGATTCATGAGCATGAGGCGTATCACTGATATGTGTTAA

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251857.1 lncRNA downstream 603 14173817 ~ 14189001 (-) True LOC122352120
TU104012 lncRNA downstream 264768 13924616 ~ 13924836 (-) True G70309
TU104011 lncRNA downstream 265500 13923749 ~ 13924104 (-) True G70308
TU103897 lncRNA downstream 277751 13881750 ~ 13911853 (-) False rif1
TU104049 lncRNA upstream 53663 14244287 ~ 14247328 (-) True G70332
TU104075 lncRNA upstream 172415 14363039 ~ 14372674 (-) False LOC122351495
TU104117 lncRNA upstream 286708 14477332 ~ 14562992 (-) True G70382
TU104132 lncRNA upstream 399234 14589858 ~ 14590275 (-) True G70393
TU104140 lncRNA upstream 403639 14594263 ~ 14595342 (-) True G70396
XM_043249650.1 mRNA downstream 17086 14171789 ~ 14172518 (-) False LOC122352116
XM_043249649.1 mRNA downstream 17086 14171789 ~ 14172518 (-) True LOC122352116
XM_043248566.1 mRNA downstream 91990 14096875 ~ 14097614 (-) True crygs4
XM_043249448.1 mRNA downstream 95712 14092927 ~ 14093892 (-) True crygs3
XM_043248406.1 mRNA downstream 102833 13985015 ~ 14086771 (-) False LOC122351370
XM_043249257.1 mRNA upstream 4059 14194683 ~ 14195492 (-) True crygm1
XM_043249303.1 mRNA upstream 6080 14196704 ~ 14197466 (-) False LOC122351901
XM_043249302.1 mRNA upstream 6080 14196704 ~ 14197466 (-) True LOC122351901
XM_043249217.1 mRNA upstream 8602 14199226 ~ 14200065 (-) True crygm6
XM_043248572.1 mRNA upstream 10244 14200868 ~ 14201664 (-) True si:dkey-57a22.14
TU103993 other downstream 249736 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 376277 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 693959 13473140 ~ 13495645 (-) False gypc
TU103526 other downstream 693959 13473140 ~ 13495645 (-) False gypc
TU103179 other downstream 1203626 12985124 ~ 12985978 (-) True G69757
TU104031 other upstream 5855 14196479 ~ 14253776 (-) True G70317
TU104362 other upstream 1112479 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 1199225 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1580797 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2626516 16817140 ~ 16823694 (-) False G70986

Expression Profile