RNA id: XM_043249259.1


Basic Information

Item Value
RNA id XM_043249259.1
length 2241
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC122351877
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9628614 ~ 9652625 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTACTGAGGGTTTGGTTTTTCCACGGTGAAGATTGTGGCCCTGCCTTTTTATTGGCTGTAGCAACATCCATTGAAGGATATAAACCCCTTCAAATTCATAAGTGCTTTGCAGAGTTTCAATTCTAGCCAACACTACCAGCTCTTAGGCTTGTAATTACTGCTGATTGTGAATGATATGTTTGTTAAAATGGCTGCTTCTGTGTTGCTCTTCTTCCTTTTCTGCCTGGGATCAGCAGAGGCTGGGAAGCTATTGGTGATTCCAGCATTTGGCAGCCACTGGACAGGCATGAAGCCTTTGGTGGAGGAGCTCGGCCGGAGAGGAAACCAAGTGGTGGTCGTCATCCCAGAGGAAAGTCTGAACATGGCACCAGCACAACATACCACTACTCTGATGTACCCAGTACCCTACACCAAGACCCAGCTACAGGAGAAAATGAAAGTAGGCATAGGGAAGTTGTTGAGTGCTGATGTATCCACAGATCTGGCCAGGTTTCAAAATTTCATTCTCACTATGGATATGCTTAAAGTTACTGTATCCCAGAACGCAGAGGGTCTGCTCTCCAACAAGGACTTAATGAAGAAGCTGCAAGAGTACAACTTTGATGCGATTCTCACAGATCCATTTGAGACTGTTGGAGTCATTGCTGCTGAATATCTCTCAATTCCTGCCATCTATATGCAAACAAGCCATCCCTGTGGTGTTGATGCTCTTGCCAGTCAATGTCCAGCTCCATCTTCTTATGTTCCACAGCCTTTAACTCACTTTACTGATCGCATGAATCTCTGGCAAAGGAGTGTGAACCTGGTAAGGACTCTGATTCAGCCCATGACTTGTGATCGTATGCTTGCCCGTGCAGATGAGATCGCCTCACAAGTACTTCAGAGAAAAACATCAATGGTGGAGATCATGAGTCGTGCAGCTCTTTGGTTCATGCATTTTGACTTTGTCTTTGAATTACCTCGTCCATTGATGCCTAACATGGTCATAATTGGAGGACTGGACAGCAAGAAAGCACAACCTTTGACACAAgagctggaggagttTGTGAACGGTTCTGGAGAGCATGGGTTTGTGGTCTTCACTCTGGGCTCCATGGTGTCACAGTTACCCGAGGCTAAAGCCAGAGAATTCTTTGAGGCTTTCAGGCAGATACCTCAGAGGGTGCTATGGAGATACACTGGACCAGTCCCTGAAAATGCTCCAAAGAATGTCAAACTGATGAAGTGGCTGCCACAAAATGATCTCTTGGGCCATCCTAAGGTTAAGGCTTTTATTACACATGGTGGATCACATGGAATCTATGAAGGAATTTGTAATGGGGTGCCAATGGTGATGCTTCCTCTGTTTGGCGACCAAGGGGATAACGTTCAGCGCTTAGTTTCTCGAGGAGTGGCAGAAACCCTCAGTATCTTTGATGTGACCTCAGAAAAACTGCTGGTTGCATTGAGAAAGGTCATCAATGAAAAAAGCTACAAGGAGAAAATGACAGAGCTTTCAGCTATTCACAGAGACCGCCCCATTGAGCCTCTGGACCTGGCTGTGTTCTGGACTGAGTTTGTTATGAGACACAAAGGGGCAGCACATCTCAGACCTGCAGCCCACGAGCTGAACTGGATTCAGTATCATTCTCTGGACGTCATTGGCTTTCTCCTTCTTATTCTAGTGACTGTTATTTTCATAACTGTCAAAAGCTGCACGTTCTGTTTCAGGAAGTGCTTCAGGAAAACtcagaaaaagaagaaggagTAGATATATTAAGTCATCATtttgaaatgtctgtttttattggGTGATTGTTTAGAGACTTGTTTAATAGAACGTGAATTACCTCCATGACCTGGATCAACGACTTGAATAACCCCCTGCCAAAACCTGTActcattttttcaaatttgttatttttagttaccgttatttcaaatcaaaataaacaaattcatcaaaagatactgtaaaaaagtatttgaacTAATTCTTTAAGACAACTCGGCTCATTTACTGTTATAGATAATTAGTTTAACATACTAATAACATGACATAATTGTGCTTTGCAGGCTAAGTCTGAAGTTTACTTGGCAAACTTCATATAATTGCTAACTGTTAAGTCACTGACAAAGCATTGATAGAAAAAACAAGGCACCTGCCTGCATTCAATTTCAAGgctttactgaattaaaaaaagaaccatgtcaaatatttttgatttctgttaatcaaataaattctgaatatgaaaata

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101892 lncRNA upstream 52960 9575421 ~ 9575654 (+) True G68908
TU101881 lncRNA upstream 215879 9255332 ~ 9412735 (+) True G68901
TU101878 lncRNA upstream 387227 9240938 ~ 9241387 (+) True G68900
TU101875 lncRNA upstream 434311 9180904 ~ 9194303 (+) True G68897
TU101872 lncRNA upstream 444046 9180751 ~ 9184568 (+) True G68896
TU102047 lncRNA downstream 238026 9890651 ~ 9891580 (+) True G69003
TU102091 lncRNA downstream 402871 10055496 ~ 10056501 (+) True G69028
TU102094 lncRNA downstream 408433 10061058 ~ 10061611 (+) True G69031
TU102095 lncRNA downstream 409060 10061685 ~ 10061887 (+) True G69032
TU102096 lncRNA downstream 409583 10062208 ~ 10062436 (+) True G69033
XM_043248969.1 mRNA upstream 17868 9601986 ~ 9610746 (+) True spopla
XM_043248971.1 mRNA upstream 17868 9601986 ~ 9610746 (+) False spopla
XM_043248970.1 mRNA upstream 17868 9601986 ~ 9610746 (+) False spopla
XM_043248061.1 mRNA upstream 53860 9570400 ~ 9574754 (+) True hnmt
XM_043249641.1 mRNA upstream 61617 9443125 ~ 9566997 (+) False thsd7ba
XM_043249505.1 mRNA downstream 1031 9653656 ~ 9658375 (+) True prmt2
XM_043249671.1 mRNA downstream 185690 9838315 ~ 9884933 (+) True LOC122352127
XM_043248207.1 mRNA downstream 242456 9895081 ~ 9906181 (+) True LOC122351260
XM_043248563.1 mRNA downstream 341252 9993877 ~ 10006512 (+) True LOC122351484
XM_043248128.1 mRNA downstream 355317 10007942 ~ 10022230 (+) False LOC122351208
XR_006251853.1 other upstream 71967 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 478948 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 478953 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 762717 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 1195131 8431145 ~ 8433483 (+) False sumo3b
XR_006251850.1 other downstream 676106 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 1830812 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 2393874 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 2974910 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 3078211 12730836 ~ 12730962 (+) True LOC122352187

Expression Profile