RNA id: XM_043249264.1


Basic Information

Item Value
RNA id XM_043249264.1
length 3559
RNA type mRNA
GC content 0.36
exon number 1
gene id LOC122351880
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9633153 ~ 9636711 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCATAGTTATGCACCACTGCTGATTTTGCCTGTGCTGTTGCTTATACTAACTCTCTAATGTGAAGAGAACCCTctttaataatatgaattaacTTACAAAAACCTCTATATGCTGCTGGAAAAAAACGTTTTGGAGAAATGTTAGATTATTTGTGAAAATTGCACCAGTAAGGGATCAATAGAATAGAATTAATAGAAGATGTTGGGAGgagggagaacctgtttgaacAGAAAACAGTAGAAACAATAGTTTGACTATTTCTGGAATTTTATCACTTTACAAAACTCTACAAACCAGTTTTACGGTTTTTGTGCATGTGACAGTGTGCCCCCTTTTCagcttaataaaatatgtagCACATATAACACATTTCCATTTTCTCACTGTAGATGTAACTGTAaccattatttttgtcataccatccattattttgtttatatttccaAATCATTAATTAATGTCTTAGCTAATTCCATGAGCATGATGCATTTGCCTTGCAATTCCTATAGAGGGTAGTCTAAGTGCTAGGAACTGTGAGCCAAGCATGGCTTTGACATTTTTGCTGTATAGCTTTGCCAGTAACCATCACAATttgcagtttttacattttgctttctttttcttttgttttttctatgaCATTAAAAATTCATATCCATTTATTCCTGCAATTTTTTGCATGACAAAATCTTTTTTCAACTTTCACCCCGATTGGTTGCCGCACTGCCTTAGATAGAAGAAGTCCCACCCACCTGCAGTGGTGTCCACCTTCATTGGAGATAAAGTCATTGTGAGACATTGGAGTACTTTACATTGCACATTGCCAGATTGATTTTGCCGACCTCTGCTGCAGCTTGCAAAGGCAAaagtgagagatttttttttttattatatataccaGTGATAAAATGCCTGGCCTGTGGTTGCTTCTGGGTCTCTTCTTGGGTTCAGCTGAAGCTGGGAAACTGTTGGTTATACCATCAGATGGCAGTCACTGGTTGGGGATGAAGCCTATTGTGGAGGAGCTGGGGAGGAAAGGAAACCAGGTGGTGGTCGTCATCCCAGAGGCGAGTCTGAGTATGGGTCCTTCAGAGCATACCACCACTCTGACGTATCCAGTCAACTACACCAAGGCTGAACTACATACACTATTAGAAGGCAATTTAACTGAGATTCTGAGTACGGACCTTTCTTCTGACCTGTCCAAGTTCCTGGTTTTCTTCTACCAAATGCACCTTCTTCGAAGCTTCATAATAAGGAATGCAGAGGGTCTGTTCTTTAAGGAAGACTTGATGAAGAAGCTCCAAGACTACAGCTTTGATGCGATTCTCACCGACCCGTTTGAGCCTGTTGGGGTTATTGTTAGTGAATATCTCTCCATTCCAgctatttatatgcaaataaacctTCCCTGTGGTGTCGACGCTCTTGCCAGCCAATGTCCAAGTCCACCCTCTTATGTTCCACAGCGTAATACCCACTTTACAGACAAGATGAATTTGTGGCAGAGGTGTGTCAACCTGGTAAGGACTCTGCTGCAGCCCATGGCttgtaaatacatgcatactgAAGCAGATGAGATCGCCTCACGTGtacttcagaaaaaaactaCGATTATGGAGATCATGAGCCATGCAGCTCTCTGGTTTATGCGCTTTGACTTTGCTTTTGAATTTCCACGTCCAGTGATGCCTAACATGGTGATGATTGGAGGTATGGCAACCAAGAAGCCCAAACTATTGACACAAGTAAGCTCTAATTTCCATGCAAATCACACACCGCAAGGATCAGTGATATAGCTCTTTTTTTCCATATGTGGTTTTTCAGTCCTTGTCTGTCATTGTCATGGACTGTAAAAAATAGCCAGCAAATGCAAAAGCTCAAACTTCAGACCAGCACCAAAACCCATACcatttagtgttttgtttaaattaatagtgTCTAATGGGGTGAGGCAGAAACTAATGTGGTCTTTTCAGAAAGAGCAAAATCATTTTAGAAATACACATTCTCTTGAAACATCTCTAcctacaataatattaaaaagtctaTTTCTGGACACTGAGGCAAAGTAATATGCTGTCAGTTAACTATTTCCTGGATTTTTCATAACAACATGCTAATTTGTACAGCGATAAAATAGGctataaatagcatatattaTCAACCATAAATGAACGTCATTGCAAAAGGCAAAGTTATTCACACTCAACGGTGGTTTAATGTGAGTTTTGAGTAAAAGTGTACTATTAATCTCATAAATTTTATACATTAGCATGATGCTAATGTTAGCTTTAATGCTGCAGCTCAGTTGCAGTTCTTCTTCATAAAGCATTTTGTCATAATATTGCAAATGTAATGTGAGCACATGTTATCATGATATCGGATTAGAGGGTCTAGTTGGAGTgggacattttaaattacacacTTTTTATAGCCTTACAGCCCAGTGTTGAGGAAGATATGTTAGTGCGTTATAACCACAGTTCTTGCGCTTATtccaaaattttaaatgcattaaaatcttttttaaaatgtattgtttcttCTCAAACTAGATAAAAAAACCTACAGATAGATTAAGCAAACAAACtgacaattatatttaatatagtttgcatttatattggTGACAATATATTACACAAGTATAGATTTGTTTTACTCTTAGTGATTTATATGTAAGTTTTAATATGTAACTATACATACAAAAATCACACACTCTCTGTGGGCTTATTACTTGTTAAGAttgaacatatttaattaagttaagcttaaaatgaaatagctatagttattttaaatggtagtatGGCATTTTGAATTCAGTGCTTTAGGCTTCACTGTTTATTATGCCACTATGGTCagcaggctggttttagaggggtttAGCCAGGCTGGGAgtccagctaaaaccagccacttccagcttaaaccagctaacaCCTGCCAACCAGCCTAGGttggttttagctgtttttttcccagcaGGGATGTGGTTTGGATATTTTCATAACAACATGCTAATTGGTACAGTGATACAAAAAGGCTATACATagcatattttaacaacaacaaattccATGTCATTGCAAAAGGAAAGGTTATTAACACTCAATGGTGGTTTAATGTGAGTTTTGAGTAAAAGTGTACTATTAATTTCATAATGTTTGTACATTAGCATGGTGCTAATGTTAGCTTTAATGCTACAGATCAGTTGCAGTTCTTCTTCATAAAGCATTTTGTCATAATACTGCATGcgagtttccaaaaaaaaccccattttGTTCTATTTATTAAGAAATAGTTAGGTAAAAGTTTACTGGGATTGTGGCTATGTGgcttgataaatgttttattgccagTATAAAGTTTGATAATAGCTGGATAAAAACCAAGAATAATGATAAaggaataataatgataatgtctCATACCTGGTTGAGTGGTAAAAAGATATGTTTCCCTAAACTAAtcatgtatttctttatttgaacaaatttgCATGGAAATCCTAGTATTTAAAATTTGCAATTGATCATGATTAATCAGAGTC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101892 lncRNA upstream 57499 9575421 ~ 9575654 (+) True G68908
TU101881 lncRNA upstream 220418 9255332 ~ 9412735 (+) True G68901
TU101878 lncRNA upstream 391766 9240938 ~ 9241387 (+) True G68900
TU101875 lncRNA upstream 438850 9180904 ~ 9194303 (+) True G68897
TU101872 lncRNA upstream 448585 9180751 ~ 9184568 (+) True G68896
TU102047 lncRNA downstream 253940 9890651 ~ 9891580 (+) True G69003
TU102091 lncRNA downstream 418785 10055496 ~ 10056501 (+) True G69028
TU102094 lncRNA downstream 424347 10061058 ~ 10061611 (+) True G69031
TU102095 lncRNA downstream 424974 10061685 ~ 10061887 (+) True G69032
TU102096 lncRNA downstream 425497 10062208 ~ 10062436 (+) True G69033
XM_043248969.1 mRNA upstream 22407 9601986 ~ 9610746 (+) True spopla
XM_043248971.1 mRNA upstream 22407 9601986 ~ 9610746 (+) False spopla
XM_043248970.1 mRNA upstream 22407 9601986 ~ 9610746 (+) False spopla
XM_043248061.1 mRNA upstream 58399 9570400 ~ 9574754 (+) True hnmt
XM_043249645.1 mRNA upstream 70836 9443125 ~ 9562317 (+) False thsd7ba
XM_043249263.1 mRNA downstream 680 9637391 ~ 9639325 (+) True LOC122351879
XM_043249265.1 mRNA downstream 2666 9639377 ~ 9641034 (+) True LOC122351881
XM_043249262.1 mRNA downstream 5986 9642697 ~ 9650909 (+) True LOC122351878
XM_043249261.1 mRNA downstream 9733 9646444 ~ 9652625 (+) False LOC122351877
XM_043249258.1 mRNA downstream 11177 9647888 ~ 9652625 (+) True LOC122351877
XR_006251853.1 other upstream 76506 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 483487 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 483492 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 767256 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 1199670 8431145 ~ 8433483 (+) False sumo3b
XR_006251850.1 other downstream 692020 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 1846726 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 2409788 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 2990824 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 3094125 12730836 ~ 12730962 (+) True LOC122352187

Expression Profile