RNA id: XM_043249270.1


Basic Information

Item Value
RNA id XM_043249270.1
length 4093
RNA type mRNA
GC content 0.49
exon number 7
gene id plekhm3
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11051094 ~ 11085910 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCATTTCCGCTGACGGAACTGAATGTGACAGATTGTAAACAGAAGCGGGATGTCGGGCCCTGGGGAAGGACGTCCTGGTGCCACATTGCATTTATCACTCGCTGAATTACTGCCTTACAGACTGCAGTGATTTAATTGAGGCACTCATCTGAATGAGGCAACACCTGTTCAGGACAGCACTGTTTGCGCTCACCTTACCCAGTGCTGAAACTGATAGCTGGCACAGTGGTCAGTTCTCATTAGGTCCTTGATTAACAACATTGGCTCATAAAGTGACAGTCCTGGAACTGGTTCAGGCCTTTGTGGACCATCTGTTTTGCTACACTTCCTTTTGGGTTCAGACAGCAGATGTTCCGTCTGCGGTGCCTTCAGGCCTTGCAATCCTGTCGTGTCTTCCCTCACACAAGTAAGGAAACAGTCCAATCGCTCCACCCCTCCACTTCCTTTGTGACGCCGAAACTGTCAAGGTGATGGATGGTCTGGAGGTTGAGGACATAAGCCCCGCCCTTGAGGCCACTGAGGACTACTTGCATTGCCTCGATGACAATCAAGGAGATGGCCAGGTACGTCCGCCCAAGCTTAAAGAGGCCTCCACCTTGGACAAGTTGAATTCCAGTGGGGTGTGGGGGCTACTGACAGGAAAGCAATCTGAAATATCACCCAAAAATATGGCTTGGGCGGAGCAGACATCATTCACAGTGCTGGGCCTGCGACATGGAAAAAGGAACCGAGCTCGATCCACTAACGATTTGGCGGCTCATGCCAAAGAGATGAACTCCACCACCAATGCATCCAGTGGTGGCTTCAAGCGTGGCCACAACCGCTCCCGTTCAGACGTCAACAACCGCACCTACACCGATAATGGCATGCCTGCCATTGACAAAAATACACTCAAGAACATGGCACTGAACGACCACAGAGATGctcATAAGGAAAGCAGCCCTAGCCTGGTGAAACAGGGAATGCTGGAGCAGAGAGAGGGCCCGTGGGGACGTTGGACTACCTGTCATGTGGAGCTTACGCCCTGTGAGTTGCGTCTCTACAGCCTGGACAGCAGCGGCAACCAGCAGCTATGTGCCGCCCTCTCACTGTCCCATTGCCAAGGGGTGAGCGCCCCGCAGCCGCAAGATGGACGTGTACTCCAGGCCGTCTTCTTTAACAGCACCCGTGTGCAGTTACGCGCACCCTGCCAGTGGGAGGCACTGGAGTGGCGTAGACTCCTCTGGGAACGTGTCCTGGCTGCCCGTCCAGCCAATCGCAAAGGGGAGCCGGCCCGTGCCAACTCCCCTACCCCTCATGAACCCGATCCAGATGCGGCGACTGTGCCAGCCCCTCGACCTCTGGTACGTCCCACGGCCCTACCACTGTTCACCCAGCACTGTGCTGATGTTCTTAAGGCTGGTCTTCTGCACCAACTCACCGACCTCAATAACTGGAGGGCCTTCACGTTTGTATTAAGCCGCACTGAGCTGCAGGCCTTCCCGACCGAGGGAAGAGGCCCAGTGTCGGAGCCAGTGTTGAGGTACCCACTGGCCTCCTGTCTGGCTGTGCAGCGGGATGATGAAGATGGAGACACCAGCTCCCGCTTCCAGGCAGTCTTCCCTGAGGATGTGCTGCGCTTGCGGGCAGAGAGTGAGTCCAAGGCCCAGGACTGGATGGAGGCCTTGCGCACAGCAGTGCCGGCTCAGCGGCCACAGTGCGAGAATAACCAAGTGGTGATAAGGAGTAAGCCTGCCAGGGAGCGACGTCACAGGGAAGCCCAGAGAGCTAAACGACAGTCCGTCACCACTAGCTTTCTCAGCATCCTGACCTGTCTGGCTGTAGAAAAGGGTCTCACTGCTCAGAGCTTCAGATGTGCAGGATGCCAGAGGCCAGTGGGTCTGTCACGGTGCAAGGCCAAAGTTTGCTCTTACAGCGGCTGGTACTACTGCCCAAGTTGTCACCAGGACAACCTCTTCCTCATACCTGCACGTCTACTGCACAATTGGGACACTCATAAACACAAGGTGTCAAAACAAGCAAAGGAGTTTCTGGAGTTTGTTTATGAGGAGCCCCTGTTAGACGTCCAGCAGTTGAACCCATGTCTGTATGAGCATTGCGAGGCATTGGCAGCCATTCTTAAATTGAGACAGcagctccagtctctcagggcTTACCTCTTCAGCTGCCGGGCCACAGTGGCAGAAGACCTCCGCCGCAGGATCTTTCCGAGAGAATACCTGCTACAGCATGTGCACCTCTACTCGTTGGCAGACCTACAGCAGAACATCTATTCTCCTGTCCCACATCCCCTCTCCCTTCTGTCTCCTGGTGGGAGTCTGGAGTCCCACTCTGCCCCACGTTCCCCCCACCCAGCTAACTAATTACTGCCATTCAGGAGCAACAGGCAGAAAAACAAAGCGTGACAGTCCTGCCTCTGCTTCAATTCCATTCTATTCTTCCCCAACATCCCATTGCCCGACACTACCTCTCTgacctttatttaaatttttttttaggttctACATGTCAATTACAGcgtgttttttaatgtatataataatttatagtaaattgtatgtattaatttactttaattctgttaattaattcagctgctaaataaatgtttaaaccttTGTAAATAcctttttcagtctttttaacTGAATTGTAATAGGGACGTATTTTTCTCATGGTTTTTGCTCAGTATTGGGTCTGTGTTACTTAAAACAGAGTACAGTGTTACAAACACATCTGGGTGTCAAAAAGTGcggcatatttttttcttctattctgtttattttgaacCAGTTGTCTTTGTCGCAACAATTTGGCTCATAGTTGCAGCTTTGAAGTGAAGCGATACTGTTCTCTGTGGTTCTTAAATGCTCTCTGTACTGTCAGTACTTTGTCCCTCTTCTTGTGTACTTCTTATTCATGGCATTCGCCACAAGGCCTTTATGCTCTCTCCCCCACTGCCCCTGTAAGGCCCAAATTTGAGGCATTTCCCATTCACGTCACATTACTTTCTCTTTCAGCTTCTTAATTGGCTTACCTTATTAAGGAGCCATTTTCTTTTAGTGTTGCTGCTTAATGCCGGTTCCTCCACAGCTCTGGAATGTTCGCCCTCCGTGTCAAGGTCACTGAATGCTGAACTATCTCCAGCAAGACTCCAAACACTATAGAGGAAAAACAAATGCTCTTCCCAATTAGTTCAAACAATTAGCACAGAGTTTTgggagttttcttttttaaaaaatggcccGGTTGACCATATTTGTTTGCTCAGAATCCAGCTTTGTTTGGCCACCACCTTTTCTTGATATCTCCACTGGAAGAGTAAGAATAGTTAACCAAGTGCACCAACATGGACACAAGTAGCATTGCTCTTGCCAACAATATGTACATAAATTAGTTGAAAAGACAACATTGATATCCTTGGAATCTGAAGAGAAACGTCATCTTTCAGTGTATTCGTAAAACCAATGTTCTTCAAGGTTTACAACCAAGGCACCTGGTCCACCATGACCAATGTATTCAAATGGTCCATGTGTATGAAGAAAGTTCATGCCGTGTTTCTTGTGCCCACTTCTCACGAGACCCTGGCAggtcatctctctctcacttccttGTGCACGCTGGTTGTAATCCTGTTTTGCGAGGCCCTGGCAGGGAGGGTGTTATCCAAACAGAGCTCACACTCTTTTTATCTGTCTAATCTGGGCCCTTTCTCTGCCGTTTAATGGAGCGGGCAAGGACATTAGGGCCAGGGCTGAGGAGGGGATGAAGAAGTAGGCGCTAAACTGTGGTTTTAGGGGATTAAGCAGCTAACGACAAAGCACATGCAAGACAGGAGCAGAAGGTGGGGGGTTTGGGGGGAGTTGATTTGGCAGACGTCACCCATGCCCCCCGCAATAGCCACAAAGATGCTGTTTTTAGTGGGCTACCTGACCTTGAAgcatatgtttctttttttcttgtataatttgaataaaacaatggCCTGAAAAGGAACATGagttttagaatttaaaagtatttgatgtctcccttttgtttttaataagcaCTTCAGCTGCAACTGCATCTAAACATTTAATGTACACTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102615 lncRNA downstream 28742 11029377 ~ 11030493 (-) True G69396
TU102576 lncRNA downstream 105250 10947044 ~ 10953985 (-) True G69362
XR_006251756.1 lncRNA downstream 112491 10930480 ~ 10946744 (-) False LOC122351427
TU102742 lncRNA upstream 273040 11358950 ~ 11365819 (-) True G69467
TU102798 lncRNA upstream 310766 11396676 ~ 11493120 (-) False LOC122351858
XR_006251827.1 lncRNA upstream 704871 11790781 ~ 11954234 (-) True LOC122351998
TU102924 lncRNA upstream 999804 12085714 ~ 12156439 (-) False G69596
TU102926 lncRNA upstream 999804 12085714 ~ 12156439 (-) True G69596
XM_043248825.1 mRNA downstream 13773 11041292 ~ 11045462 (-) False fzd5
XM_043248824.1 mRNA downstream 13773 11041292 ~ 11045462 (-) False fzd5
XM_043248822.1 mRNA downstream 13773 11041292 ~ 11045462 (-) True fzd5
XM_043249490.1 mRNA downstream 223265 10833262 ~ 10835970 (-) True zgc:162396
XM_043249489.1 mRNA downstream 226119 10829914 ~ 10833116 (-) True zgc:162780
XM_043249406.1 mRNA upstream 3760 11089670 ~ 11096681 (-) True idh1
XM_043249581.1 mRNA upstream 107783 11193693 ~ 11204968 (-) True armc8
XM_043249582.1 mRNA upstream 107783 11193693 ~ 11204942 (-) False armc8
XM_043248821.1 mRNA upstream 124290 11210200 ~ 11216654 (-) True rab5b
XM_043249309.1 mRNA upstream 140046 11225956 ~ 11231688 (-) True lcmt2
XR_006251823.1 other downstream 372608 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 539778 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 617363 10433507 ~ 10441872 (-) False trim13
TU102802 other upstream 411100 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 1081081 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1336519 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 1622721 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 1652134 12738044 ~ 12738171 (-) True LOC122352189

Expression Profile